Wall clock time and date at job start Tue Mar 31 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47248 * 2 1 4 4 C 1.34784 * 120.00126 * 269.76572 * 3 2 1 5 5 O 1.21609 * 119.99786 * 186.43879 * 4 3 2 6 6 C 1.47378 * 119.99742 * 6.43992 * 4 3 2 7 7 C 1.36410 * 127.19442 * 7.85638 * 6 4 3 8 8 O 1.33655 * 108.39627 * 179.83711 * 7 6 4 9 9 C 1.34210 * 110.90770 * 0.44524 * 8 7 6 10 10 C 1.50702 * 125.43752 * 179.72788 * 9 8 7 11 11 C 1.34178 * 109.12454 * 359.72515 * 9 8 7 12 12 C 1.46497 * 120.00106 * 89.76183 * 3 2 1 13 13 C 1.53949 * 113.74326 * 141.25729 * 12 3 2 14 14 N 1.47818 * 86.03298 * 90.88472 * 13 12 3 15 15 C 1.36934 * 134.45591 * 204.64237 * 14 13 12 16 16 H 1.08000 * 119.99684 * 179.87340 * 15 14 13 17 17 C 1.38806 * 119.99973 * 359.87090 * 15 14 13 18 18 N 1.31621 * 120.00584 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00007 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47460 * 119.99953 * 19 17 15 22 22 H 1.48504 * 109.47258 * 240.00056 * 19 17 15 23 23 C 1.47579 * 91.04796 * 24.55267 * 14 13 12 24 24 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46957 * 299.99997 * 1 2 3 26 26 H 1.08996 * 109.47300 * 59.99833 * 1 2 3 27 27 H 1.09003 * 109.46957 * 240.00003 * 2 1 3 28 28 H 1.08996 * 109.47300 * 120.00167 * 2 1 3 29 29 H 1.08003 * 125.80463 * 359.97438 * 7 6 4 30 30 H 1.08997 * 109.46947 * 270.00261 * 10 9 8 31 31 H 1.08996 * 109.47074 * 29.99717 * 10 9 8 32 32 H 1.09001 * 109.47252 * 149.99762 * 10 9 8 33 33 H 1.07998 * 127.01856 * 180.02562 * 11 9 8 34 34 H 1.09004 * 112.94160 * 9.67502 * 12 3 2 35 35 H 1.08997 * 113.76971 * 205.15124 * 13 12 3 36 36 H 1.09005 * 113.76746 * 336.55048 * 13 12 3 37 37 H 0.96999 * 120.00602 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.76721 * 221.15013 * 23 14 13 39 39 H 1.09001 * 113.77466 * 89.75683 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2475 2.0150 -1.1672 5 8 2.7623 3.1167 -1.1700 6 6 1.8741 1.3728 -2.4401 7 6 1.1620 0.2210 -2.6049 8 8 1.0378 -0.0143 -3.9147 9 6 1.6525 0.9383 -4.6329 10 6 1.7207 0.9911 -6.1375 11 6 2.1966 1.8363 -3.7975 12 6 2.2575 2.0736 1.2687 13 6 3.5097 2.9692 1.2596 14 7 2.6064 4.0517 0.8156 15 6 2.7766 5.2160 0.1152 16 1 1.9285 5.8535 -0.0869 17 6 4.0391 5.5770 -0.3349 18 7 5.0727 4.8004 -0.0881 19 14 4.2714 7.1656 -1.2897 20 1 2.9632 7.8540 -1.4311 21 1 5.2179 8.0475 -0.5607 22 1 4.8179 6.8587 -2.6360 23 6 1.4478 3.3730 1.4280 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7641 -0.3948 -1.8118 30 1 2.6073 0.4575 -6.4799 31 1 0.8304 0.5236 -6.5581 32 1 1.7736 2.0301 -6.4626 33 1 2.7568 2.7194 -4.0673 34 1 2.1984 1.4109 2.1321 35 1 3.9397 3.1332 2.2476 36 1 4.2509 2.6805 0.5142 37 1 5.9549 5.0524 -0.4030 38 1 0.5457 3.4062 0.8169 39 1 1.2707 3.6560 2.4656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949931065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:48 Heat of formation + Delta-G solvation = 100.589472 kcal Electronic energy + Delta-G solvation = -22926.928739 eV Core-core repulsion = 19648.246373 eV Total energy + Delta-G solvation = -3278.682366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30343 -39.57134 -36.33376 -35.34030 -32.74087 -32.00136 -31.27955 -29.96753 -27.25490 -26.46585 -24.60732 -23.96665 -23.01648 -22.06511 -20.60293 -19.87943 -17.89260 -16.86049 -16.54286 -16.11425 -15.94464 -14.91492 -14.47839 -14.37084 -14.27482 -13.50023 -13.35090 -13.03515 -13.02728 -12.86634 -12.82624 -12.36140 -12.22453 -12.10128 -11.55986 -11.53255 -11.21407 -11.07886 -10.96122 -10.63759 -10.38284 -9.97223 -9.55758 -9.29845 -9.21952 -8.68146 -8.25767 -8.24747 -7.73314 -6.34672 -5.37286 -2.62919 1.76268 2.43695 3.06964 3.57243 3.59676 3.62589 3.64754 4.24327 4.71771 4.75131 4.95488 5.01009 5.11414 5.21302 5.31994 5.40519 5.42765 5.48681 5.62599 5.69647 5.73597 5.81881 5.82766 5.88696 6.07997 6.08666 6.21896 6.26303 6.45070 6.63354 6.66212 6.72787 7.09687 7.28522 7.46523 7.65441 7.93300 8.23516 8.34972 9.35878 9.39387 10.11740 10.97260 11.81968 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.007636 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.517246 B = 3666.075775 C = 5086.850000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.091 3.909 3 N -0.600 5.600 4 C 0.532 3.468 5 O -0.394 6.394 6 C -0.203 4.203 7 C -0.040 4.040 8 O -0.183 6.183 9 C -0.031 4.031 10 C -0.069 4.069 11 C -0.160 4.160 12 C 0.097 3.903 13 C 0.160 3.840 14 N -0.582 5.582 15 C -0.179 4.179 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.918 5.918 19 Si 0.897 3.103 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.295 1.295 23 C 0.102 3.898 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.231 0.769 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.080 0.920 37 H 0.243 0.757 38 H 0.037 0.963 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -14.512 -4.492 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 N -0.337 5.337 4 C 0.316 3.684 5 O -0.259 6.259 6 C -0.208 4.208 7 C -0.108 4.108 8 O -0.080 6.080 9 C -0.079 4.079 10 C -0.126 4.126 11 C -0.179 4.179 12 C -0.007 4.007 13 C 0.033 3.967 14 N -0.308 5.308 15 C -0.307 4.307 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.729 3.271 20 H -0.210 1.210 21 H -0.225 1.225 22 H -0.223 1.223 23 C -0.026 4.026 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.247 0.753 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.671 -13.805 -4.845 17.007 hybrid contribution 0.134 0.959 -0.306 1.016 sum -8.537 -12.846 -5.151 16.261 Atomic orbital electron populations 1.22519 0.96814 1.01918 1.03562 1.21874 0.93742 0.84605 1.03042 1.47297 1.68498 1.12569 1.05383 1.17577 0.82355 0.86661 0.81828 1.91462 1.34299 1.15445 1.84722 1.22026 1.05438 0.97660 0.95652 1.25988 1.02598 0.99271 0.82935 1.83693 1.61064 1.45420 1.17865 1.22217 1.00693 0.90396 0.94623 1.20254 1.03101 1.03840 0.85358 1.22573 1.03751 1.01372 0.90227 1.23057 1.00949 0.92914 0.83819 1.22524 0.92612 0.84382 0.97155 1.45556 1.02209 1.22990 1.60025 1.18634 0.92998 0.94225 1.24795 0.91504 1.24462 0.95665 0.97950 1.01324 1.69791 0.98334 1.37259 1.51300 0.86258 0.77106 0.83789 0.79899 1.21039 1.22469 1.22288 1.22992 0.93089 0.90533 0.95990 0.91656 0.91317 0.91733 0.90055 0.90430 0.75309 0.90358 0.90835 0.89444 0.82650 0.90480 0.95565 0.90199 0.94688 0.94528 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.83 37.16 0.33 -1.60 16 2 C 0.09 1.11 5.61 -4.04 -0.02 1.09 16 3 N -0.60 -10.76 2.73 -169.19 -0.46 -11.22 16 4 C 0.53 11.48 7.19 -12.54 -0.09 11.39 16 5 O -0.39 -10.71 10.48 5.27 0.06 -10.66 16 6 C -0.20 -3.72 6.12 -103.28 -0.63 -4.36 16 7 C -0.04 -0.58 8.81 30.07 0.27 -0.31 16 8 O -0.18 -2.63 10.52 7.66 0.08 -2.55 16 9 C -0.03 -0.44 7.28 -35.74 -0.26 -0.70 16 10 C -0.07 -0.68 10.40 36.01 0.37 -0.31 16 11 C -0.16 -2.82 10.91 -37.45 -0.41 -3.23 16 12 C 0.10 1.87 4.72 -70.15 -0.33 1.54 16 13 C 0.16 3.95 6.45 -2.83 -0.02 3.93 16 14 N -0.58 -15.70 2.11 -177.88 -0.38 -16.08 16 15 C -0.18 -5.38 8.77 -15.06 -0.13 -5.51 16 16 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 17 C 0.00 0.04 4.98 -17.43 -0.09 -0.05 16 18 N -0.92 -29.03 11.37 55.49 0.63 -28.40 16 19 Si 0.90 24.12 29.55 -169.99 -5.02 19.10 16 20 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 22 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 23 C 0.10 2.19 8.43 -2.97 -0.03 2.17 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.74 6.26 -51.93 -0.33 0.42 16 27 H 0.08 0.93 4.86 -51.93 -0.25 0.68 16 28 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 29 H 0.23 2.51 3.18 -52.48 -0.17 2.35 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.16 2.87 8.06 -52.49 -0.42 2.45 16 34 H 0.08 1.20 7.97 -51.93 -0.41 0.78 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 2.26 6.32 -51.93 -0.33 1.94 16 37 H 0.24 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 312.46 15.07 4.71 4.71 Total: -1.00 -36.76 312.46 -6.67 -43.44 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.25 Total: -2.39 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.04 Total: 4.05 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.21 Total: -55.70 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.14 Total: -13.21 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.76 -6.67 -43.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949931065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.026 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds