Wall clock time and date at job start Tue Mar 31 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47248 * 2 1 4 4 C 1.34784 * 120.00126 * 269.76572 * 3 2 1 5 5 O 1.21609 * 119.99786 * 186.43879 * 4 3 2 6 6 C 1.47378 * 119.99742 * 6.43992 * 4 3 2 7 7 C 1.36410 * 127.19442 * 7.85638 * 6 4 3 8 8 O 1.33655 * 108.39627 * 179.83711 * 7 6 4 9 9 C 1.34210 * 110.90770 * 0.44524 * 8 7 6 10 10 C 1.50702 * 125.43752 * 179.72788 * 9 8 7 11 11 C 1.34178 * 109.12454 * 359.72515 * 9 8 7 12 12 C 1.46497 * 120.00106 * 89.76183 * 3 2 1 13 13 C 1.53949 * 113.74326 * 141.25729 * 12 3 2 14 14 N 1.47818 * 86.03298 * 90.88472 * 13 12 3 15 15 C 1.36934 * 134.45591 * 204.64237 * 14 13 12 16 16 H 1.08000 * 119.99684 * 179.87340 * 15 14 13 17 17 C 1.38806 * 119.99973 * 359.87090 * 15 14 13 18 18 N 1.31621 * 120.00584 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00007 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47460 * 119.99953 * 19 17 15 22 22 H 1.48504 * 109.47258 * 240.00056 * 19 17 15 23 23 C 1.47579 * 91.04796 * 24.55267 * 14 13 12 24 24 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46957 * 299.99997 * 1 2 3 26 26 H 1.08996 * 109.47300 * 59.99833 * 1 2 3 27 27 H 1.09003 * 109.46957 * 240.00003 * 2 1 3 28 28 H 1.08996 * 109.47300 * 120.00167 * 2 1 3 29 29 H 1.08003 * 125.80463 * 359.97438 * 7 6 4 30 30 H 1.08997 * 109.46947 * 270.00261 * 10 9 8 31 31 H 1.08996 * 109.47074 * 29.99717 * 10 9 8 32 32 H 1.09001 * 109.47252 * 149.99762 * 10 9 8 33 33 H 1.07998 * 127.01856 * 180.02562 * 11 9 8 34 34 H 1.09004 * 112.94160 * 9.67502 * 12 3 2 35 35 H 1.08997 * 113.76971 * 205.15124 * 13 12 3 36 36 H 1.09005 * 113.76746 * 336.55048 * 13 12 3 37 37 H 0.96999 * 120.00602 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.76721 * 221.15013 * 23 14 13 39 39 H 1.09001 * 113.77466 * 89.75683 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2475 2.0150 -1.1672 5 8 2.7623 3.1167 -1.1700 6 6 1.8741 1.3728 -2.4401 7 6 1.1620 0.2210 -2.6049 8 8 1.0378 -0.0143 -3.9147 9 6 1.6525 0.9383 -4.6329 10 6 1.7207 0.9911 -6.1375 11 6 2.1966 1.8363 -3.7975 12 6 2.2575 2.0736 1.2687 13 6 3.5097 2.9692 1.2596 14 7 2.6064 4.0517 0.8156 15 6 2.7766 5.2160 0.1152 16 1 1.9285 5.8535 -0.0869 17 6 4.0391 5.5770 -0.3349 18 7 5.0727 4.8004 -0.0881 19 14 4.2714 7.1656 -1.2897 20 1 2.9632 7.8540 -1.4311 21 1 5.2179 8.0475 -0.5607 22 1 4.8179 6.8587 -2.6360 23 6 1.4478 3.3730 1.4280 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.7641 -0.3948 -1.8118 30 1 2.6073 0.4575 -6.4799 31 1 0.8304 0.5236 -6.5581 32 1 1.7736 2.0301 -6.4626 33 1 2.7568 2.7194 -4.0673 34 1 2.1984 1.4109 2.1321 35 1 3.9397 3.1332 2.2476 36 1 4.2509 2.6805 0.5142 37 1 5.9549 5.0524 -0.4030 38 1 0.5457 3.4062 0.8169 39 1 1.2707 3.6560 2.4656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949931065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:48 Heat of formation + Delta-G solvation = 75.474371 kcal Electronic energy + Delta-G solvation = -22928.017811 eV Core-core repulsion = 19648.246373 eV Total energy + Delta-G solvation = -3279.771438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.52927 -41.16511 -38.08527 -36.73653 -34.08013 -33.87600 -32.59791 -31.25037 -29.19398 -27.62365 -26.46022 -25.59523 -24.37280 -23.49007 -21.86133 -21.46765 -19.33036 -18.63844 -18.11886 -17.43791 -17.19403 -16.74855 -16.34728 -15.87280 -15.56200 -15.47533 -14.81422 -14.40593 -14.17742 -14.08733 -13.97609 -13.78590 -13.39969 -13.25526 -13.17045 -12.98648 -12.82103 -12.59189 -12.52945 -12.41388 -12.03324 -11.90508 -11.48997 -11.31457 -10.79191 -10.59313 -10.14534 -9.44541 -9.30011 -8.44673 -7.66733 -4.89750 0.52946 1.12095 1.37862 1.40967 1.48383 1.91168 2.25066 2.57641 2.70661 3.50066 3.57826 3.67205 3.75731 3.90159 4.01902 4.05663 4.37300 4.40608 4.48669 4.53914 4.61303 4.70926 4.74915 4.81256 4.82372 4.87635 4.91573 5.00505 5.03966 5.16305 5.30503 5.39768 5.43696 5.45417 5.67736 6.06319 6.08446 6.21974 6.78628 7.12193 7.80815 7.88104 8.80980 9.52325 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.007636 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.517246 B = 3666.075775 C = 5086.850000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 N -0.598 5.598 4 C 0.525 3.475 5 O -0.471 6.471 6 C -0.248 4.248 7 C 0.000 4.000 8 O -0.175 6.175 9 C -0.006 4.006 10 C -0.070 4.070 11 C -0.209 4.209 12 C 0.127 3.873 13 C 0.154 3.846 14 N -0.609 5.609 15 C -0.174 4.174 16 H 0.056 0.944 17 C -0.057 4.057 18 N -0.945 5.945 19 Si 0.952 3.048 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.304 1.304 23 C 0.103 3.897 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.268 0.732 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.022 0.978 36 H 0.035 0.965 37 H 0.232 0.768 38 H 0.032 0.968 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -17.631 -4.439 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 N -0.334 5.334 4 C 0.311 3.689 5 O -0.341 6.341 6 C -0.253 4.253 7 C -0.068 4.068 8 O -0.071 6.071 9 C -0.055 4.055 10 C -0.126 4.126 11 C -0.229 4.229 12 C 0.022 3.978 13 C 0.027 3.973 14 N -0.334 5.334 15 C -0.304 4.304 16 H 0.074 0.926 17 C -0.249 4.249 18 N -0.597 5.597 19 Si 0.784 3.216 20 H -0.199 1.199 21 H -0.221 1.221 22 H -0.233 1.233 23 C -0.024 4.024 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.283 0.717 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.223 -16.988 -4.768 20.911 hybrid contribution 0.806 1.797 -0.339 1.999 sum -10.417 -15.190 -5.107 19.114 Atomic orbital electron populations 1.22473 0.94641 1.04411 1.02742 1.22298 0.95384 0.81214 1.05072 1.47437 1.67485 1.14582 1.03849 1.18142 0.80978 0.86155 0.83612 1.91417 1.37907 1.18719 1.86055 1.21883 1.08797 1.00071 0.94540 1.26494 0.99478 0.97279 0.83509 1.83758 1.60484 1.44990 1.17851 1.22817 0.97937 0.88577 0.96181 1.20496 1.05168 1.04942 0.81987 1.22553 1.06437 1.02425 0.91472 1.22735 0.95934 0.92975 0.86145 1.22435 0.93708 0.85915 0.95224 1.45795 1.04918 1.22509 1.60208 1.18788 0.92466 0.94899 1.24207 0.92630 1.25096 0.95752 1.00920 1.03134 1.69991 0.98072 1.38730 1.52928 0.85362 0.77206 0.80855 0.78165 1.19944 1.22069 1.23253 1.23194 0.91610 0.91108 0.96458 0.87388 0.91517 0.93278 0.89207 0.87276 0.71704 0.88473 0.88291 0.88872 0.85323 0.84887 0.96056 0.94668 0.95835 0.94999 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.83 71.98 0.64 -2.21 16 2 C 0.08 1.65 5.61 86.38 0.48 2.13 16 3 N -0.60 -20.55 2.73 -807.44 -2.20 -22.75 16 4 C 0.52 23.25 7.19 86.65 0.62 23.87 16 5 O -0.47 -27.11 10.48 -4.06 -0.04 -27.16 16 6 C -0.25 -9.18 6.12 -18.99 -0.12 -9.29 16 7 C 0.00 0.00 8.81 67.39 0.59 0.60 16 8 O -0.17 -4.50 10.52 4.49 0.05 -4.45 16 9 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 10 C -0.07 -1.21 10.40 71.24 0.74 -0.46 16 11 C -0.21 -7.70 10.91 23.65 0.26 -7.44 16 12 C 0.13 4.66 4.72 46.75 0.22 4.88 16 13 C 0.15 7.80 6.45 86.44 0.56 8.35 16 14 N -0.61 -33.78 2.11 -716.69 -1.51 -35.29 16 15 C -0.17 -10.95 8.77 84.03 0.74 -10.22 16 16 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 17 C -0.06 -3.65 4.98 84.86 0.42 -3.23 16 18 N -0.95 -63.22 11.37 21.65 0.25 -62.98 16 19 Si 0.95 52.06 29.55 68.60 2.03 54.09 16 20 H -0.27 -14.30 7.11 99.48 0.71 -13.60 16 21 H -0.29 -15.65 7.11 99.48 0.71 -14.95 16 22 H -0.30 -16.88 7.11 99.48 0.71 -16.18 16 23 C 0.10 4.33 8.43 86.48 0.73 5.06 16 24 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 0.93 6.26 -2.39 -0.01 0.92 16 27 H 0.09 1.68 4.86 -2.39 -0.01 1.67 16 28 H 0.11 1.62 7.96 -2.39 -0.02 1.60 16 29 H 0.27 4.62 3.18 -2.91 -0.01 4.61 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 34 H 0.13 3.49 7.97 -2.38 -0.02 3.47 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.03 2.10 6.32 -2.38 -0.02 2.09 16 37 H 0.23 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -88.57 312.46 5.69 -82.88 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.06 Total: 3.61 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.07 Total: 12.05 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -3.47 Total: -121.02 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: 0.00 Total: -31.61 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.03 Total: 54.09 kcal Total: -88.57 5.69 -82.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949931065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.356 kcal (2) G-P(sol) polarization free energy of solvation -88.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds