Wall clock time and date at job start Tue Mar 31 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99713 * 2 1 4 4 O 1.21285 * 120.00099 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00462 * 0.02562 * 3 2 1 6 6 C 1.50698 * 109.47667 * 180.02562 * 5 3 2 7 7 C 1.34511 * 125.79158 * 89.99240 * 6 5 3 8 8 C 1.41383 * 106.83780 * 180.02562 * 7 6 5 9 9 C 1.34517 * 106.84538 * 0.02562 * 8 7 6 10 10 O 1.34304 * 125.78537 * 269.69492 * 6 5 3 11 11 C 1.46493 * 120.00103 * 179.97438 * 2 1 3 12 12 C 1.53786 * 113.61369 * 43.63039 * 11 2 1 13 13 C 1.53783 * 87.08060 * 220.01856 * 12 11 2 14 14 N 1.46495 * 113.69272 * 139.98915 * 13 12 11 15 15 C 1.36942 * 119.99785 * 107.46831 * 14 13 12 16 16 H 1.07998 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99834 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99928 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99982 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47223 * 90.00096 * 19 17 15 21 21 H 1.48496 * 109.47168 * 210.00115 * 19 17 15 22 22 H 1.48504 * 109.47002 * 330.00236 * 19 17 15 23 23 C 1.53781 * 113.61582 * 306.13112 * 11 2 1 24 24 H 1.09003 * 109.46991 * 274.18187 * 1 2 3 25 25 H 1.08996 * 109.46889 * 34.18311 * 1 2 3 26 26 H 1.09001 * 109.46602 * 154.18126 * 1 2 3 27 27 H 1.09010 * 109.46662 * 299.99839 * 5 3 2 28 28 H 1.09000 * 109.47412 * 59.99207 * 5 3 2 29 29 H 1.07994 * 126.58221 * 359.97105 * 7 6 5 30 30 H 1.08007 * 126.57846 * 179.97438 * 8 7 6 31 31 H 1.07998 * 125.79125 * 179.97438 * 9 8 7 32 32 H 1.08999 * 112.90823 * 174.87182 * 11 2 1 33 33 H 1.09000 * 113.61212 * 334.56156 * 12 11 2 34 34 H 1.08999 * 113.61691 * 105.46924 * 12 11 2 35 35 H 1.09000 * 113.60962 * 270.88404 * 13 12 11 36 36 H 0.97002 * 120.00355 * 287.45870 * 14 13 12 37 37 H 0.97006 * 119.99811 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61135 * 254.52935 * 23 11 2 39 39 H 1.08998 * 113.61306 * 25.42911 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 -0.0002 7 6 2.8751 4.2157 -1.0917 8 6 3.7447 5.2317 -0.6331 9 6 3.7141 5.1936 0.7112 10 8 2.8714 4.2185 1.0889 11 6 2.1976 -1.2687 0.0006 12 6 1.6223 -2.3125 -0.9712 13 6 1.8957 -3.3624 0.1187 14 7 0.8368 -4.3665 0.2476 15 6 1.0498 -5.6464 -0.1905 16 1 1.9982 -5.9154 -0.6315 17 6 0.0462 -6.5977 -0.0688 18 7 0.2507 -7.8276 -0.4903 19 14 -1.5946 -6.1322 0.6933 20 1 -2.5167 -5.6565 -0.3692 21 1 -2.1830 -7.3188 1.3646 22 1 -1.3883 -5.0510 1.6902 23 6 1.7861 -2.2171 1.1390 24 1 -0.3633 0.0749 1.0250 25 1 -0.3633 0.8501 -0.5774 26 1 -0.3632 -0.9251 -0.4476 27 1 0.7584 2.5302 -0.8893 28 1 0.7590 2.5299 0.8907 29 1 2.6622 3.9667 -2.1207 30 1 4.3233 5.9082 -1.2448 31 1 4.2691 5.8408 1.3742 32 1 3.2757 -1.1361 -0.0892 33 1 0.5630 -2.1720 -1.1861 34 1 2.2231 -2.4499 -1.8703 35 1 2.8914 -3.8022 0.0613 36 1 -0.0152 -4.1249 0.6435 37 1 -0.4505 -8.4925 -0.4049 38 1 2.5191 -2.2773 1.9435 39 1 0.7716 -2.0503 1.5010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999584794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:26 Heat of formation + Delta-G solvation = 25.797601 kcal Electronic energy + Delta-G solvation = -21133.943365 eV Core-core repulsion = 17852.017780 eV Total energy + Delta-G solvation = -3281.925585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71918 -40.22506 -38.17592 -34.94911 -33.45359 -33.12056 -32.11202 -30.54947 -27.48740 -27.15097 -25.28850 -24.46954 -22.32974 -21.91781 -20.77339 -19.61353 -18.96724 -17.61130 -17.51287 -17.21853 -16.40582 -15.83600 -15.73422 -14.92979 -14.62205 -14.31639 -13.93435 -13.55259 -13.16289 -12.98720 -12.94026 -12.85884 -12.73162 -12.47738 -12.27055 -11.92590 -11.81683 -11.76010 -11.05112 -10.73731 -10.49763 -10.21569 -10.15272 -10.06659 -9.84553 -9.61334 -8.96104 -8.62157 -8.56838 -7.33051 -5.82461 -3.18765 1.53381 2.43165 2.50670 2.74147 3.08848 3.31923 3.33662 3.40625 4.31547 4.47016 4.53045 4.73151 4.84716 4.92545 4.97823 5.00556 5.03013 5.09884 5.20356 5.32799 5.42060 5.52275 5.61634 5.65838 5.72159 5.74324 5.90275 6.04183 6.09754 6.17734 6.26939 6.33354 6.45842 6.63953 6.87422 6.96327 7.37194 7.93673 8.08950 8.36975 9.14096 9.86343 10.05775 11.35681 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047974 B = 0.003109 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.510874 B = 9002.709460 C = 9235.263347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.513 3.487 4 O -0.533 6.533 5 C -0.061 4.061 6 C 0.008 3.992 7 C -0.198 4.198 8 C -0.213 4.213 9 C -0.040 4.040 10 O -0.173 6.173 11 C 0.117 3.883 12 C -0.176 4.176 13 C 0.176 3.824 14 N -0.734 5.734 15 C -0.249 4.249 16 H 0.092 0.908 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.885 3.115 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.202 0.798 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 25.948 1.168 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.409 6.409 5 C -0.101 4.101 6 C -0.043 4.043 7 C -0.217 4.217 8 C -0.233 4.233 9 C -0.108 4.108 10 O -0.069 6.069 11 C 0.014 3.986 12 C -0.218 4.218 13 C 0.064 3.936 14 N -0.374 5.374 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.579 5.579 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.206 4.206 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.218 0.782 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.379 25.587 1.374 25.661 hybrid contribution -1.250 0.343 0.303 1.331 sum 0.130 25.930 1.677 25.984 Atomic orbital electron populations 1.21901 0.79617 1.03985 1.02039 1.47827 1.06910 1.05780 1.72565 1.20349 0.88080 0.84946 0.76654 1.90728 1.13776 1.87151 1.49251 1.20161 0.95702 0.87947 1.06255 1.21528 1.00808 0.97469 0.84501 1.21522 1.01589 0.99305 0.99297 1.21799 1.04037 1.02586 0.94837 1.23987 0.96910 0.93738 0.96147 1.83986 1.48056 1.39910 1.34917 1.22617 0.97590 0.80106 0.98331 1.24319 1.01285 0.96873 0.99321 1.21316 0.93727 0.86652 0.91942 1.42702 1.13039 1.08345 1.73266 1.19146 1.01014 0.84631 1.33107 0.89029 1.24704 0.98002 0.95473 1.00911 1.69702 1.33695 1.02332 1.52164 0.86551 0.85290 0.77427 0.79254 1.21049 1.21675 1.20319 1.23949 1.01705 0.97010 0.97888 0.92305 0.91238 0.89587 0.85960 0.87130 0.83610 0.83497 0.78162 0.86478 0.89902 0.91589 0.89405 0.80502 0.92980 0.91395 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 9.17 59.85 0.55 1.16 16 2 N -0.60 -7.39 3.09 -173.00 -0.53 -7.93 16 3 C 0.51 6.76 7.67 -10.99 -0.08 6.67 16 4 O -0.53 -9.29 15.49 5.55 0.09 -9.20 16 5 C -0.06 -0.57 4.84 -29.04 -0.14 -0.71 16 6 C 0.01 0.09 5.81 -35.63 -0.21 -0.12 16 7 C -0.20 -2.18 10.81 -39.70 -0.43 -2.61 16 8 C -0.21 -2.11 10.91 -39.70 -0.43 -2.54 16 9 C -0.04 -0.39 12.09 29.42 0.36 -0.03 16 10 O -0.17 -2.11 10.65 5.70 0.06 -2.05 16 11 C 0.12 1.69 4.24 -67.12 -0.28 1.41 16 12 C -0.18 -2.78 7.38 -25.92 -0.19 -2.97 16 13 C 0.18 3.23 4.48 -67.12 -0.30 2.93 16 14 N -0.73 -16.66 5.21 -52.64 -0.27 -16.93 16 15 C -0.25 -6.86 10.45 -15.06 -0.16 -7.01 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 19 Si 0.88 21.43 27.74 -169.99 -4.71 16.72 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 23 C -0.17 -2.53 7.42 -25.92 -0.19 -2.72 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.43 6.61 -51.93 -0.34 0.08 16 26 H 0.09 0.86 5.78 -51.93 -0.30 0.56 16 27 H 0.12 0.77 7.41 -51.92 -0.38 0.39 16 28 H 0.11 0.81 8.11 -51.93 -0.42 0.38 16 29 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.84 7.18 -51.93 -0.37 1.46 16 33 H 0.08 1.28 5.98 -51.93 -0.31 0.97 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 36 H 0.36 7.98 5.79 -40.82 -0.24 7.74 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.17 7.44 -51.93 -0.39 0.79 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -34.71 325.00 -6.62 -41.33 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.30 Total: 7.74 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.61 Total: -6.50 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.03 Total: -52.94 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.15 Total: -11.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.71 -6.62 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999584794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.127 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds