Wall clock time and date at job start Tue Mar 31 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34774 * 119.99713 * 2 1 4 4 O 1.21285 * 120.00099 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00462 * 0.02562 * 3 2 1 6 6 C 1.50698 * 109.47667 * 180.02562 * 5 3 2 7 7 C 1.34511 * 125.79158 * 89.99240 * 6 5 3 8 8 C 1.41383 * 106.83780 * 180.02562 * 7 6 5 9 9 C 1.34517 * 106.84538 * 0.02562 * 8 7 6 10 10 O 1.34304 * 125.78537 * 269.69492 * 6 5 3 11 11 C 1.46493 * 120.00103 * 179.97438 * 2 1 3 12 12 C 1.53786 * 113.61369 * 43.63039 * 11 2 1 13 13 C 1.53783 * 87.08060 * 220.01856 * 12 11 2 14 14 N 1.46495 * 113.69272 * 139.98915 * 13 12 11 15 15 C 1.36942 * 119.99785 * 107.46831 * 14 13 12 16 16 H 1.07998 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99834 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99928 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99982 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47223 * 90.00096 * 19 17 15 21 21 H 1.48496 * 109.47168 * 210.00115 * 19 17 15 22 22 H 1.48504 * 109.47002 * 330.00236 * 19 17 15 23 23 C 1.53781 * 113.61582 * 306.13112 * 11 2 1 24 24 H 1.09003 * 109.46991 * 274.18187 * 1 2 3 25 25 H 1.08996 * 109.46889 * 34.18311 * 1 2 3 26 26 H 1.09001 * 109.46602 * 154.18126 * 1 2 3 27 27 H 1.09010 * 109.46662 * 299.99839 * 5 3 2 28 28 H 1.09000 * 109.47412 * 59.99207 * 5 3 2 29 29 H 1.07994 * 126.58221 * 359.97105 * 7 6 5 30 30 H 1.08007 * 126.57846 * 179.97438 * 8 7 6 31 31 H 1.07998 * 125.79125 * 179.97438 * 9 8 7 32 32 H 1.08999 * 112.90823 * 174.87182 * 11 2 1 33 33 H 1.09000 * 113.61212 * 334.56156 * 12 11 2 34 34 H 1.08999 * 113.61691 * 105.46924 * 12 11 2 35 35 H 1.09000 * 113.60962 * 270.88404 * 13 12 11 36 36 H 0.97002 * 120.00355 * 287.45870 * 14 13 12 37 37 H 0.97006 * 119.99811 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61135 * 254.52935 * 23 11 2 39 39 H 1.08998 * 113.61306 * 25.42911 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6178 -0.0002 7 6 2.8751 4.2157 -1.0917 8 6 3.7447 5.2317 -0.6331 9 6 3.7141 5.1936 0.7112 10 8 2.8714 4.2185 1.0889 11 6 2.1976 -1.2687 0.0006 12 6 1.6223 -2.3125 -0.9712 13 6 1.8957 -3.3624 0.1187 14 7 0.8368 -4.3665 0.2476 15 6 1.0498 -5.6464 -0.1905 16 1 1.9982 -5.9154 -0.6315 17 6 0.0462 -6.5977 -0.0688 18 7 0.2507 -7.8276 -0.4903 19 14 -1.5946 -6.1322 0.6933 20 1 -2.5167 -5.6565 -0.3692 21 1 -2.1830 -7.3188 1.3646 22 1 -1.3883 -5.0510 1.6902 23 6 1.7861 -2.2171 1.1390 24 1 -0.3633 0.0749 1.0250 25 1 -0.3633 0.8501 -0.5774 26 1 -0.3632 -0.9251 -0.4476 27 1 0.7584 2.5302 -0.8893 28 1 0.7590 2.5299 0.8907 29 1 2.6622 3.9667 -2.1207 30 1 4.3233 5.9082 -1.2448 31 1 4.2691 5.8408 1.3742 32 1 3.2757 -1.1361 -0.0892 33 1 0.5630 -2.1720 -1.1861 34 1 2.2231 -2.4499 -1.8703 35 1 2.8914 -3.8022 0.0613 36 1 -0.0152 -4.1249 0.6435 37 1 -0.4505 -8.4925 -0.4049 38 1 2.5191 -2.2773 1.9435 39 1 0.7716 -2.0503 1.5010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999584794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:25 Heat of formation + Delta-G solvation = 2.070036 kcal Electronic energy + Delta-G solvation = -21134.972269 eV Core-core repulsion = 17852.017780 eV Total energy + Delta-G solvation = -3282.954489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.47397 -41.32339 -39.44245 -36.27561 -34.95709 -34.06672 -33.06476 -32.37056 -28.32557 -27.98970 -26.60998 -26.10512 -23.84089 -22.67456 -21.74804 -20.89990 -20.11436 -19.34563 -18.46285 -18.16912 -17.48152 -16.73369 -16.66007 -16.48975 -15.87054 -15.66104 -15.17398 -14.73293 -14.40785 -14.33677 -13.79204 -13.72821 -13.64731 -13.59163 -13.52048 -13.31177 -12.93792 -12.80999 -12.67306 -12.28078 -12.06367 -11.81605 -11.71983 -11.55509 -10.96365 -10.90789 -10.80010 -9.61256 -9.37554 -9.28320 -8.01461 -5.35806 0.76446 1.39173 1.44161 1.51522 1.54980 1.67020 1.98439 2.24533 2.50202 3.28134 3.51307 3.62259 3.70844 3.79080 3.82778 4.09015 4.13956 4.15916 4.21683 4.28358 4.36967 4.45886 4.71427 4.73238 4.81704 4.82599 4.93244 4.99224 5.02202 5.06206 5.16453 5.22839 5.35885 5.61966 5.63917 5.78067 6.21260 6.22710 6.41354 7.08068 7.12073 7.83232 8.04286 9.20092 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047974 B = 0.003109 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.510874 B = 9002.709460 C = 9235.263347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.597 5.597 3 C 0.509 3.491 4 O -0.585 6.585 5 C -0.052 4.052 6 C -0.016 4.016 7 C -0.213 4.213 8 C -0.230 4.230 9 C -0.045 4.045 10 O -0.194 6.194 11 C 0.129 3.871 12 C -0.163 4.163 13 C 0.154 3.846 14 N -0.736 5.736 15 C -0.236 4.236 16 H 0.054 0.946 17 C -0.068 4.068 18 N -0.986 5.986 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.247 1.247 23 C -0.148 4.148 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.235 0.765 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 28.961 1.982 29.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.327 5.327 3 C 0.298 3.702 4 O -0.465 6.465 5 C -0.091 4.091 6 C -0.067 4.067 7 C -0.233 4.233 8 C -0.248 4.248 9 C -0.112 4.112 10 O -0.091 6.091 11 C 0.024 3.976 12 C -0.204 4.204 13 C 0.044 3.956 14 N -0.377 5.377 15 C -0.367 4.367 16 H 0.072 0.928 17 C -0.259 4.259 18 N -0.636 5.636 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.227 1.227 22 H -0.171 1.171 23 C -0.188 4.188 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.251 0.749 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.660 28.677 2.192 28.768 hybrid contribution -0.466 -0.546 -0.003 0.718 sum -1.126 28.131 2.189 28.238 Atomic orbital electron populations 1.22221 0.77106 1.05203 1.03825 1.47862 1.08340 1.04621 1.71924 1.21050 0.87674 0.86159 0.75311 1.90708 1.16215 1.87916 1.51645 1.20271 0.95130 0.84628 1.09053 1.21988 1.01773 0.98367 0.84532 1.21876 1.01767 0.99687 0.99921 1.22174 1.04315 1.02931 0.95430 1.24745 0.96209 0.93282 0.96932 1.83975 1.48742 1.40688 1.35650 1.22202 0.97040 0.81249 0.97061 1.24133 1.02024 0.95873 0.98414 1.21573 0.92030 0.86862 0.95089 1.42609 1.14374 1.07262 1.73474 1.19087 0.99351 0.86747 1.31529 0.92820 1.25595 1.02595 0.95296 1.02391 1.69904 1.35158 1.03896 1.54664 0.85344 0.79607 0.77502 0.78922 1.20008 1.22683 1.17095 1.23790 1.02699 0.94905 0.97379 0.90599 0.87703 0.90366 0.82567 0.84603 0.82592 0.81553 0.74900 0.88110 0.88714 0.92241 0.91070 0.79685 0.93362 0.91167 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 9.17 127.77 1.17 1.96 16 2 N -0.60 -13.07 3.09 -819.63 -2.53 -15.61 16 3 C 0.51 12.33 7.67 87.66 0.67 13.00 16 4 O -0.58 -20.12 15.49 -3.05 -0.05 -20.17 16 5 C -0.05 -0.80 4.84 29.10 0.14 -0.66 16 6 C -0.02 -0.35 5.81 24.83 0.14 -0.21 16 7 C -0.21 -4.38 10.81 22.19 0.24 -4.14 16 8 C -0.23 -4.20 10.91 22.19 0.24 -3.96 16 9 C -0.04 -0.79 12.09 66.97 0.81 0.02 16 10 O -0.19 -4.45 10.65 -2.52 -0.03 -4.48 16 11 C 0.13 3.55 4.24 45.52 0.19 3.75 16 12 C -0.16 -4.95 7.38 31.12 0.23 -4.72 16 13 C 0.15 5.61 4.48 45.52 0.20 5.81 16 14 N -0.74 -32.74 5.21 -320.44 -1.67 -34.41 16 15 C -0.24 -13.23 10.45 84.03 0.88 -12.35 16 16 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 18 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 19 Si 0.96 43.78 27.74 68.60 1.90 45.68 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.25 -9.89 6.52 99.48 0.65 -9.24 16 23 C -0.15 -4.24 7.42 31.12 0.23 -4.01 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 0.72 6.61 -2.39 -0.02 0.70 16 26 H 0.08 1.24 5.78 -2.39 -0.01 1.23 16 27 H 0.16 1.26 7.41 -2.38 -0.02 1.25 16 28 H 0.14 1.40 8.11 -2.39 -0.02 1.38 16 29 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.23 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.10 3.16 7.18 -2.39 -0.02 3.15 16 33 H 0.09 2.68 5.98 -2.39 -0.01 2.67 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 36 H 0.37 15.29 5.79 -92.71 -0.54 14.76 16 37 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.09 2.46 7.44 -2.39 -0.02 2.45 16 Total: -1.00 -78.45 325.00 4.02 -74.43 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.47 Total: 26.09 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.62 Total: -8.97 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.90 Total: -112.59 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.65 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.90 Total: 45.68 kcal Total: -78.45 4.02 -74.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999584794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.502 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds