Wall clock time and date at job start Tue Mar 31 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00136 * 2 1 4 4 O 1.21696 * 120.00057 * 183.24103 * 3 2 1 5 5 C 1.46656 * 119.99901 * 3.23728 * 3 2 1 6 6 C 1.36547 * 125.98683 * 173.41768 * 5 3 2 7 7 C 1.40366 * 106.70921 * 180.02562 * 6 5 3 8 8 C 1.35133 * 107.11388 * 359.97438 * 7 6 5 9 9 O 1.33936 * 108.76763 * 0.02562 * 8 7 6 10 10 C 1.46504 * 120.00038 * 179.97438 * 2 1 3 11 11 C 1.53038 * 109.45975 * 60.02781 * 10 2 1 12 12 C 1.53196 * 109.31518 * 178.60226 * 11 10 2 13 13 N 1.46921 * 108.76337 * 54.65476 * 12 11 10 14 14 C 1.36937 * 120.62892 * 126.40899 * 13 12 11 15 15 H 1.08001 * 120.00303 * 323.97536 * 14 13 12 16 16 C 1.38815 * 120.00186 * 143.97991 * 14 13 12 17 17 N 1.31618 * 119.99663 * 2.13095 * 16 14 13 18 18 Si 1.86802 * 120.00239 * 182.12568 * 16 14 13 19 19 H 1.48501 * 109.46935 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46678 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47043 * 240.00061 * 18 16 14 22 22 C 1.46927 * 118.74044 * 306.38565 * 13 12 11 23 23 C 1.53037 * 109.45988 * 299.97600 * 10 2 1 24 24 H 1.08996 * 109.47065 * 83.93381 * 1 2 3 25 25 H 1.09003 * 109.47003 * 203.92914 * 1 2 3 26 26 H 1.08997 * 109.47185 * 323.93140 * 1 2 3 27 27 H 1.07998 * 126.64842 * 359.97438 * 6 5 3 28 28 H 1.07998 * 126.44334 * 179.97438 * 7 6 5 29 29 H 1.07997 * 125.61987 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.46389 * 180.02562 * 10 2 1 31 31 H 1.09002 * 109.50066 * 298.56710 * 11 10 2 32 32 H 1.09004 * 109.50151 * 58.66364 * 11 10 2 33 33 H 1.08998 * 109.59189 * 294.86637 * 12 11 10 34 34 H 1.09006 * 109.70235 * 174.50814 * 12 11 10 35 35 H 0.97000 * 119.99586 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.58511 * 293.81790 * 22 13 12 37 37 H 1.08996 * 109.70438 * 173.46742 * 22 13 12 38 38 H 1.08996 * 109.49943 * 301.33281 * 23 10 2 39 39 H 1.09003 * 109.49900 * 61.43157 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3544 1.1680 -0.0596 5 6 1.4074 2.4362 0.0717 6 6 1.9632 3.6762 0.2064 7 6 0.9013 4.5938 0.2318 8 6 -0.2416 3.8828 0.1124 9 8 0.0674 2.5831 0.0164 10 6 2.1976 -1.2688 0.0006 11 6 1.8282 -2.0713 -1.2491 12 6 2.6220 -3.3814 -1.2629 13 7 2.3849 -4.0910 0.0016 14 6 1.9519 -5.3901 0.0020 15 1 1.2596 -5.7289 -0.7545 16 6 2.4028 -6.2718 0.9748 17 7 3.2135 -5.8487 1.9214 18 14 1.8588 -8.0585 0.9406 19 1 0.9536 -8.2782 -0.2160 20 1 3.0498 -8.9360 0.8115 21 1 1.1401 -8.3813 2.1993 22 6 2.6217 -3.3805 1.2656 23 6 1.8281 -2.0702 1.2509 24 1 -0.3633 0.1086 -1.0219 25 1 -0.3633 -0.9394 0.4168 26 1 -0.3633 0.8306 0.6050 27 1 3.0158 3.9062 0.2801 28 1 0.9824 5.6664 0.3285 29 1 -1.2399 4.2946 0.0969 30 1 3.2692 -1.0694 0.0009 31 1 0.7609 -2.2925 -1.2371 32 1 2.0698 -1.4904 -2.1392 33 1 3.6851 -3.1636 -1.3660 34 1 2.2935 -4.0014 -2.0971 35 1 3.5289 -6.4649 2.6010 36 1 3.6848 -3.1627 1.3688 37 1 2.2925 -3.9977 2.1015 38 1 2.0698 -1.4886 2.1404 39 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005050707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:38 Heat of formation + Delta-G solvation = 11.129416 kcal Electronic energy + Delta-G solvation = -22004.928370 eV Core-core repulsion = 18722.366725 eV Total energy + Delta-G solvation = -3282.561645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.84365 -39.71244 -37.39153 -35.20046 -33.24341 -32.50888 -30.55906 -29.89113 -29.26875 -26.89698 -25.30684 -23.39809 -22.14433 -21.96685 -21.41101 -19.89412 -18.94133 -17.69567 -16.82173 -16.66498 -16.42988 -15.85307 -14.93846 -14.72427 -14.11344 -13.65135 -13.55139 -13.36602 -13.29601 -12.99935 -12.94396 -12.89147 -12.50227 -12.33027 -11.85959 -11.49715 -10.98318 -10.88149 -10.78217 -10.33166 -10.22263 -10.21169 -10.09997 -9.97405 -9.79031 -9.57565 -8.89866 -8.51430 -8.31243 -6.56120 -5.79941 -3.33448 0.98616 2.20067 2.56574 3.15860 3.23588 3.36084 3.43562 3.45297 4.43332 4.47064 4.73296 4.79999 5.22168 5.33676 5.41254 5.43281 5.48397 5.53841 5.59462 5.64446 5.69819 5.84888 5.97790 6.10866 6.15150 6.21711 6.35262 6.50890 6.55221 6.64696 6.68850 6.79579 6.92829 6.97890 7.38774 7.49036 7.76697 7.78683 8.14298 8.51611 9.23484 9.81920 10.42648 11.27173 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044152 B = 0.003732 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.026136 B = 7500.614234 C = 7610.597177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.596 5.596 3 C 0.593 3.407 4 O -0.525 6.525 5 C -0.066 4.066 6 C -0.129 4.129 7 C -0.224 4.224 8 C -0.021 4.021 9 O -0.157 6.157 10 C 0.144 3.856 11 C -0.138 4.138 12 C 0.148 3.852 13 N -0.594 5.594 14 C -0.255 4.255 15 H 0.064 0.936 16 C 0.009 3.991 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.290 1.290 22 C 0.172 3.828 23 C -0.147 4.147 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.207 0.793 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.255 0.745 36 H 0.019 0.981 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 18.084 -2.969 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.326 5.326 3 C 0.380 3.620 4 O -0.403 6.403 5 C -0.118 4.118 6 C -0.150 4.150 7 C -0.243 4.243 8 C -0.091 4.091 9 O -0.052 6.052 10 C 0.043 3.957 11 C -0.178 4.178 12 C 0.021 3.979 13 N -0.317 5.317 14 C -0.385 4.385 15 H 0.082 0.918 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.217 1.217 22 C 0.046 3.954 23 C -0.187 4.187 24 H 0.074 0.926 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.224 0.776 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.571 17.665 -2.901 19.437 hybrid contribution -0.351 -0.528 0.075 0.638 sum -7.923 17.137 -2.827 19.090 Atomic orbital electron populations 1.21958 0.79397 1.03562 1.02014 1.48115 1.07449 1.06116 1.70959 1.16743 0.86271 0.81368 0.77576 1.90869 1.12059 1.85954 1.51455 1.22282 0.80503 0.96497 1.12562 1.21966 1.01186 0.90574 1.01230 1.21833 0.91964 1.01147 1.09378 1.24458 1.00667 0.80837 1.03139 1.84338 1.23657 1.27229 1.70014 1.21321 0.97216 0.80407 0.96777 1.22376 1.01448 0.98087 0.95856 1.20894 0.95787 0.90782 0.90451 1.44027 1.77831 1.10474 0.99357 1.19186 1.20487 0.85309 1.13516 0.91833 1.25351 0.96986 0.97960 0.98666 1.69910 1.35538 1.33923 1.15354 0.86203 0.77788 0.85224 0.77474 1.20215 1.21486 1.21653 1.20890 0.95135 0.88374 0.90995 1.22637 1.01748 0.99250 0.95111 0.92577 0.89965 0.90461 0.82370 0.82843 0.77635 0.88493 0.92068 0.92928 0.96135 0.92390 0.93510 0.96282 0.88264 0.93071 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 8.67 59.85 0.52 1.45 16 2 N -0.60 -9.51 2.76 -175.44 -0.48 -10.00 16 3 C 0.59 9.90 7.64 -12.87 -0.10 9.80 16 4 O -0.52 -10.36 16.20 5.19 0.08 -10.27 16 5 C -0.07 -0.91 6.77 -36.80 -0.25 -1.16 16 6 C -0.13 -1.54 10.63 -39.39 -0.42 -1.96 16 7 C -0.22 -2.00 10.88 -39.89 -0.43 -2.44 16 8 C -0.02 -0.17 12.08 29.63 0.36 0.18 16 9 O -0.16 -1.77 7.29 4.99 0.04 -1.73 16 10 C 0.14 2.64 2.47 -67.89 -0.17 2.47 16 11 C -0.14 -2.47 5.34 -26.61 -0.14 -2.61 16 12 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 13 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 14 C -0.26 -6.93 9.55 -15.06 -0.14 -7.07 16 15 H 0.06 1.70 7.83 -52.49 -0.41 1.28 16 16 C 0.01 0.25 5.28 -17.43 -0.09 0.16 16 17 N -0.90 -25.95 10.75 55.49 0.60 -25.35 16 18 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.17 4.14 5.24 -3.71 -0.02 4.12 16 23 C -0.15 -2.88 5.32 -26.61 -0.14 -3.02 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.06 6.47 -51.93 -0.34 0.72 16 26 H 0.08 0.89 5.41 -51.93 -0.28 0.61 16 27 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 31 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.66 6.05 -51.93 -0.31 2.34 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.11 6.73 -51.93 -0.35 0.76 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -31.44 315.47 -6.99 -38.42 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.38 Total: 0.08 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.05 Total: 3.05 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.40 Total: -50.72 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.12 Total: -12.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.44 -6.99 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005050707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.553 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds