Wall clock time and date at job start Tue Mar 31 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 120.00136 * 2 1 4 4 O 1.21696 * 120.00057 * 183.24103 * 3 2 1 5 5 C 1.46656 * 119.99901 * 3.23728 * 3 2 1 6 6 C 1.36547 * 125.98683 * 173.41768 * 5 3 2 7 7 C 1.40366 * 106.70921 * 180.02562 * 6 5 3 8 8 C 1.35133 * 107.11388 * 359.97438 * 7 6 5 9 9 O 1.33936 * 108.76763 * 0.02562 * 8 7 6 10 10 C 1.46504 * 120.00038 * 179.97438 * 2 1 3 11 11 C 1.53038 * 109.45975 * 60.02781 * 10 2 1 12 12 C 1.53196 * 109.31518 * 178.60226 * 11 10 2 13 13 N 1.46921 * 108.76337 * 54.65476 * 12 11 10 14 14 C 1.36937 * 120.62892 * 126.40899 * 13 12 11 15 15 H 1.08001 * 120.00303 * 323.97536 * 14 13 12 16 16 C 1.38815 * 120.00186 * 143.97991 * 14 13 12 17 17 N 1.31618 * 119.99663 * 2.13095 * 16 14 13 18 18 Si 1.86802 * 120.00239 * 182.12568 * 16 14 13 19 19 H 1.48501 * 109.46935 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46678 * 119.99897 * 18 16 14 21 21 H 1.48494 * 109.47043 * 240.00061 * 18 16 14 22 22 C 1.46927 * 118.74044 * 306.38565 * 13 12 11 23 23 C 1.53037 * 109.45988 * 299.97600 * 10 2 1 24 24 H 1.08996 * 109.47065 * 83.93381 * 1 2 3 25 25 H 1.09003 * 109.47003 * 203.92914 * 1 2 3 26 26 H 1.08997 * 109.47185 * 323.93140 * 1 2 3 27 27 H 1.07998 * 126.64842 * 359.97438 * 6 5 3 28 28 H 1.07998 * 126.44334 * 179.97438 * 7 6 5 29 29 H 1.07997 * 125.61987 * 180.02562 * 8 7 6 30 30 H 1.08997 * 109.46389 * 180.02562 * 10 2 1 31 31 H 1.09002 * 109.50066 * 298.56710 * 11 10 2 32 32 H 1.09004 * 109.50151 * 58.66364 * 11 10 2 33 33 H 1.08998 * 109.59189 * 294.86637 * 12 11 10 34 34 H 1.09006 * 109.70235 * 174.50814 * 12 11 10 35 35 H 0.97000 * 119.99586 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.58511 * 293.81790 * 22 13 12 37 37 H 1.08996 * 109.70438 * 173.46742 * 22 13 12 38 38 H 1.08996 * 109.49943 * 301.33281 * 23 10 2 39 39 H 1.09003 * 109.49900 * 61.43157 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3544 1.1680 -0.0596 5 6 1.4074 2.4362 0.0717 6 6 1.9632 3.6762 0.2064 7 6 0.9013 4.5938 0.2318 8 6 -0.2416 3.8828 0.1124 9 8 0.0674 2.5831 0.0164 10 6 2.1976 -1.2688 0.0006 11 6 1.8282 -2.0713 -1.2491 12 6 2.6220 -3.3814 -1.2629 13 7 2.3849 -4.0910 0.0016 14 6 1.9519 -5.3901 0.0020 15 1 1.2596 -5.7289 -0.7545 16 6 2.4028 -6.2718 0.9748 17 7 3.2135 -5.8487 1.9214 18 14 1.8588 -8.0585 0.9406 19 1 0.9536 -8.2782 -0.2160 20 1 3.0498 -8.9360 0.8115 21 1 1.1401 -8.3813 2.1993 22 6 2.6217 -3.3805 1.2656 23 6 1.8281 -2.0702 1.2509 24 1 -0.3633 0.1086 -1.0219 25 1 -0.3633 -0.9394 0.4168 26 1 -0.3633 0.8306 0.6050 27 1 3.0158 3.9062 0.2801 28 1 0.9824 5.6664 0.3285 29 1 -1.2399 4.2946 0.0969 30 1 3.2692 -1.0694 0.0009 31 1 0.7609 -2.2925 -1.2371 32 1 2.0698 -1.4904 -2.1392 33 1 3.6851 -3.1636 -1.3660 34 1 2.2935 -4.0014 -2.0971 35 1 3.5289 -6.4649 2.6010 36 1 3.6848 -3.1627 1.3688 37 1 2.2925 -3.9977 2.1015 38 1 2.0698 -1.4886 2.1404 39 1 0.7608 -2.2914 1.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005050707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:37 Heat of formation + Delta-G solvation = -8.275027 kcal Electronic energy + Delta-G solvation = -22005.769810 eV Core-core repulsion = 18722.366725 eV Total energy + Delta-G solvation = -3283.403085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.66409 -41.03821 -38.99989 -36.70990 -34.42455 -33.95998 -32.15296 -31.52624 -30.50722 -28.06511 -27.06071 -24.79735 -23.86675 -22.94813 -22.64146 -21.03261 -20.54293 -18.86008 -18.59602 -17.78310 -17.46149 -17.06180 -16.71937 -15.98781 -15.70627 -15.35404 -15.00255 -14.81242 -14.36282 -14.34176 -14.15265 -13.99019 -13.91495 -13.56451 -13.25191 -12.89632 -12.82286 -12.75653 -12.54511 -12.10270 -11.95022 -11.91628 -11.54899 -11.44920 -11.23517 -11.01847 -10.56509 -9.87900 -9.52288 -8.59059 -7.87532 -5.44986 0.04622 1.45073 1.47580 1.49360 1.59359 1.59895 2.04699 2.13917 2.50074 3.29834 3.49508 3.66451 3.86832 3.97413 4.02090 4.12958 4.21327 4.29308 4.44959 4.55146 4.63594 4.65249 4.72571 4.82290 4.88435 4.92449 5.00106 5.03358 5.05239 5.13236 5.28629 5.39312 5.47712 5.52499 5.64821 5.74369 5.90824 6.28103 6.44764 6.90565 7.16477 7.81839 8.38528 9.18019 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044152 B = 0.003732 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.026136 B = 7500.614234 C = 7610.597177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.596 5.596 3 C 0.589 3.411 4 O -0.571 6.571 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.233 4.233 8 C 0.006 3.994 9 O -0.161 6.161 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.145 3.855 13 N -0.611 5.611 14 C -0.265 4.265 15 H 0.070 0.930 16 C -0.045 4.045 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.289 1.289 22 C 0.181 3.819 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.183 0.817 29 H 0.257 0.743 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.066 0.934 35 H 0.251 0.749 36 H -0.011 1.011 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 19.893 -3.852 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.379 3.621 4 O -0.453 6.453 5 C -0.155 4.155 6 C -0.149 4.149 7 C -0.251 4.251 8 C -0.063 4.063 9 O -0.057 6.057 10 C 0.050 3.950 11 C -0.161 4.161 12 C 0.019 3.981 13 N -0.334 5.334 14 C -0.395 4.395 15 H 0.087 0.913 16 C -0.241 4.241 17 N -0.581 5.581 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.220 1.220 21 H -0.216 1.216 22 C 0.054 3.946 23 C -0.170 4.170 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.171 0.829 28 H 0.201 0.799 29 H 0.273 0.727 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.007 0.993 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.496 19.494 -3.807 22.465 hybrid contribution 0.508 -0.937 0.336 1.118 sum -9.987 18.557 -3.471 21.358 Atomic orbital electron populations 1.22141 0.77075 1.04209 1.03402 1.48040 1.08706 1.04975 1.70871 1.17123 0.86023 0.82412 0.76567 1.90830 1.14064 1.86815 1.53589 1.21640 0.81740 0.95295 1.16831 1.22234 1.01988 0.90972 0.99697 1.22189 0.91018 1.02349 1.09589 1.25493 1.02485 0.79293 0.98997 1.84294 1.22144 1.29031 1.70227 1.20933 0.96155 0.81642 0.96234 1.22170 1.01351 0.96244 0.96323 1.21009 0.95795 0.92218 0.89108 1.44259 1.78021 1.10520 1.00642 1.19531 1.20397 0.86295 1.13317 0.91279 1.26124 0.97488 1.01940 0.98528 1.70105 1.37040 1.34954 1.16018 0.85145 0.77204 0.80046 0.77690 1.18748 1.21988 1.21615 1.20600 0.93948 0.89939 0.90076 1.22353 1.01346 0.97035 0.96221 0.90964 0.90010 0.88929 0.82871 0.79917 0.72739 0.91265 0.90887 0.91156 0.97275 0.91593 0.93988 0.99290 0.91259 0.92611 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.69 8.67 127.77 1.11 2.80 16 2 N -0.60 -18.63 2.76 -827.19 -2.28 -20.91 16 3 C 0.59 19.73 7.64 86.44 0.66 20.39 16 4 O -0.57 -23.43 16.20 -4.34 -0.07 -23.50 16 5 C -0.10 -2.70 6.77 24.07 0.16 -2.54 16 6 C -0.13 -2.88 10.63 22.39 0.24 -2.64 16 7 C -0.23 -3.30 10.88 22.07 0.24 -3.06 16 8 C 0.01 0.08 12.08 67.10 0.81 0.89 16 9 O -0.16 -3.11 7.29 -5.08 -0.04 -3.15 16 10 C 0.15 5.65 2.47 45.02 0.11 5.76 16 11 C -0.12 -4.25 5.34 30.67 0.16 -4.08 16 12 C 0.14 6.18 6.52 86.36 0.56 6.74 16 13 N -0.61 -31.15 2.99 -699.09 -2.09 -33.24 16 14 C -0.27 -14.51 9.55 84.03 0.80 -13.71 16 15 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 16 C -0.05 -2.52 5.28 84.86 0.45 -2.07 16 17 N -0.94 -55.52 10.75 21.65 0.23 -55.29 16 18 Si 0.97 44.49 29.55 68.60 2.03 46.51 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 C 0.18 9.06 5.24 86.36 0.45 9.51 16 23 C -0.13 -5.13 5.32 30.67 0.16 -4.97 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.90 6.47 -2.39 -0.02 1.89 16 26 H 0.09 1.88 5.41 -2.39 -0.01 1.87 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.26 0.22 8.06 -2.91 -0.02 0.19 16 30 H 0.07 2.97 6.90 -2.39 -0.02 2.95 16 31 H 0.07 2.41 7.72 -2.39 -0.02 2.40 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 2.67 7.93 -2.38 -0.02 2.65 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 37 H 0.07 3.89 6.05 -2.39 -0.01 3.87 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.58 6.73 -2.39 -0.02 2.56 16 Total: -1.00 -71.21 315.47 4.75 -66.46 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.05 Total: 10.10 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.92 Total: 13.01 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -4.14 Total: -109.44 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.11 Total: -26.65 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -71.21 4.75 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005050707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.187 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds