Wall clock time and date at job start Tue Mar 31 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34774 * 119.99954 * 2 1 4 4 O 1.21616 * 119.99902 * 180.09087 * 3 2 1 5 5 C 1.47372 * 120.00207 * 0.09890 * 3 2 1 6 6 C 1.47029 * 127.19238 * 350.65276 * 5 3 2 7 7 C 1.34184 * 105.95212 * 179.70057 * 6 5 3 8 8 O 1.34215 * 109.12419 * 0.26172 * 7 6 5 9 9 C 1.33645 * 110.91098 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99721 * 180.02562 * 2 1 3 11 11 C 1.53041 * 109.45801 * 60.06716 * 10 2 1 12 12 C 1.53193 * 109.30878 * 178.61304 * 11 10 2 13 13 N 1.46927 * 108.77731 * 54.63520 * 12 11 10 14 14 C 1.36937 * 120.63061 * 126.40765 * 13 12 11 15 15 H 1.08004 * 120.00220 * 323.59261 * 14 13 12 16 16 C 1.38814 * 119.99726 * 143.58188 * 14 13 12 17 17 N 1.31610 * 120.00098 * 352.64786 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 172.64624 * 16 14 13 19 19 H 1.48499 * 109.47108 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47201 * 120.00275 * 18 16 14 21 21 H 1.48503 * 109.46763 * 240.00114 * 18 16 14 22 22 C 1.46925 * 118.73656 * 306.39420 * 13 12 11 23 23 C 1.53039 * 109.45602 * 299.99980 * 10 2 1 24 24 H 1.08999 * 109.46703 * 84.24759 * 1 2 3 25 25 H 1.08997 * 109.47084 * 204.24691 * 1 2 3 26 26 H 1.09001 * 109.46746 * 324.25319 * 1 2 3 27 27 H 1.07999 * 127.02339 * 359.96363 * 6 5 3 28 28 H 1.08000 * 125.43537 * 180.26277 * 7 6 5 29 29 H 1.08001 * 125.80514 * 179.97438 * 9 8 7 30 30 H 1.08994 * 109.45811 * 180.02562 * 10 2 1 31 31 H 1.08997 * 109.50112 * 298.56693 * 11 10 2 32 32 H 1.09004 * 109.49954 * 58.66654 * 11 10 2 33 33 H 1.09006 * 109.58708 * 294.84654 * 12 11 10 34 34 H 1.09001 * 109.70004 * 174.49617 * 12 11 10 35 35 H 0.97005 * 120.00106 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58829 * 293.81503 * 22 13 12 37 37 H 1.09002 * 109.70049 * 173.46152 * 22 13 12 38 38 H 1.08995 * 109.50103 * 301.33632 * 23 10 2 39 39 H 1.08992 * 109.49664 * 61.43841 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3551 1.1672 -0.0017 5 6 1.4021 2.4435 0.0022 6 6 -0.0434 2.6355 -0.1857 7 6 -0.2541 3.9579 -0.0986 8 8 0.9173 4.5766 0.1162 9 6 1.9190 3.6939 0.1767 10 6 2.1976 -1.2688 -0.0006 11 6 1.8289 -2.0697 -1.2514 12 6 2.6225 -3.3800 -1.2662 13 7 2.3849 -4.0910 -0.0025 14 6 1.9518 -5.3901 -0.0037 15 1 1.2548 -5.7263 -0.7572 16 6 2.4087 -6.2749 0.9634 17 7 3.3644 -5.9092 1.7910 18 14 1.6671 -7.9847 1.0900 19 1 0.6172 -8.1470 0.0525 20 1 2.7294 -9.0016 0.8833 21 1 1.0649 -8.1646 2.4355 22 6 2.6212 -3.3818 1.2623 23 6 1.8276 -2.0716 1.2488 24 1 -0.3633 0.1030 -1.0225 25 1 -0.3633 -0.9370 0.4220 26 1 -0.3633 0.8341 0.6004 27 1 -0.7848 1.8686 -0.3546 28 1 -1.2133 4.4463 -0.1873 29 1 2.9602 3.9299 0.3399 30 1 3.2691 -1.0695 0.0000 31 1 0.7616 -2.2909 -1.2404 32 1 2.0711 -1.4877 -2.1407 33 1 3.6856 -3.1622 -1.3686 34 1 2.2943 -3.9990 -2.1011 35 1 3.6835 -6.5273 2.4671 36 1 3.6842 -3.1642 1.3662 37 1 2.2915 -4.0000 2.0974 38 1 2.0688 -1.4909 2.1390 39 1 0.7604 -2.2927 1.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005110684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:42 Heat of formation + Delta-G solvation = 20.175687 kcal Electronic energy + Delta-G solvation = -21933.401245 eV Core-core repulsion = 18651.231876 eV Total energy + Delta-G solvation = -3282.169369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.72236 -39.71386 -37.32187 -35.18412 -33.36574 -32.10485 -30.15523 -29.94409 -29.55439 -27.05855 -25.37553 -23.51443 -22.15317 -21.94368 -21.23956 -19.60824 -18.95512 -17.56583 -16.81297 -16.45368 -16.26799 -15.80561 -15.04502 -14.82684 -14.57005 -13.84142 -13.64366 -13.54356 -13.30117 -12.97987 -12.93575 -12.58559 -12.53902 -12.28933 -11.48743 -11.38909 -11.06104 -10.83501 -10.75725 -10.31830 -10.17018 -10.10693 -9.99834 -9.80203 -9.73059 -9.48437 -8.99802 -8.52307 -8.27054 -6.54860 -5.79471 -3.32519 1.29898 1.87938 2.75099 3.19741 3.35899 3.41261 3.43363 3.45350 4.38737 4.47742 4.64651 4.80844 5.14642 5.25200 5.33747 5.37007 5.42568 5.45368 5.56115 5.68126 5.74868 5.80281 5.90726 6.04820 6.11040 6.25371 6.37204 6.51833 6.59083 6.65778 6.77226 6.81066 6.95789 7.00239 7.35121 7.58315 7.68773 7.80139 8.34379 8.50773 9.22947 9.82269 10.44372 11.28956 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.003703 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.490875 B = 7559.585403 C = 7705.215078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.597 5.597 3 C 0.582 3.418 4 O -0.548 6.548 5 C -0.234 4.234 6 C -0.205 4.205 7 C -0.043 4.043 8 O -0.178 6.178 9 C 0.044 3.956 10 C 0.145 3.855 11 C -0.137 4.137 12 C 0.148 3.852 13 N -0.592 5.592 14 C -0.258 4.258 15 H 0.062 0.938 16 C 0.010 3.990 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.178 3.822 23 C -0.146 4.146 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.206 0.794 29 H 0.217 0.783 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.022 0.978 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 18.017 -3.079 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C 0.371 3.629 4 O -0.428 6.428 5 C -0.239 4.239 6 C -0.224 4.224 7 C -0.109 4.109 8 O -0.074 6.074 9 C -0.027 4.027 10 C 0.043 3.957 11 C -0.177 4.177 12 C 0.021 3.979 13 N -0.315 5.315 14 C -0.388 4.388 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.051 3.949 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.191 0.809 28 H 0.223 0.777 29 H 0.233 0.767 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.058 18.177 -2.921 20.096 hybrid contribution -0.550 -1.123 0.105 1.255 sum -8.607 17.054 -2.816 19.309 Atomic orbital electron populations 1.22399 0.80522 1.03916 1.01357 1.47915 1.06852 1.06095 1.71973 1.17310 0.86449 0.82704 0.76404 1.90783 1.13205 1.87311 1.51484 1.21557 0.94123 0.94589 1.13619 1.23697 0.95276 0.96861 1.06575 1.24002 0.88551 0.92474 1.05868 1.83809 1.15640 1.38132 1.69771 1.24400 0.92985 0.86360 0.98913 1.21226 0.97332 0.80712 0.96383 1.22367 1.01319 0.98066 0.95958 1.20891 0.95772 0.90800 0.90461 1.43989 1.77936 1.10275 0.99255 1.19161 1.19971 0.85462 1.14171 0.91986 1.25323 0.96197 0.97717 0.99733 1.69970 1.28101 1.35414 1.20974 0.86216 0.78476 0.84494 0.77531 1.20183 1.21549 1.21572 1.20699 0.95325 0.88460 0.90381 1.22588 1.01559 0.99061 0.95402 0.92690 0.90426 0.89948 0.80892 0.77735 0.76698 0.88599 0.92181 0.93018 0.96211 0.92452 0.93566 0.96025 0.89733 0.93097 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 7.80 59.85 0.47 1.18 16 2 N -0.60 -9.32 2.76 -175.17 -0.48 -9.80 16 3 C 0.58 9.54 7.67 -12.54 -0.10 9.44 16 4 O -0.55 -10.85 16.26 5.26 0.09 -10.76 16 5 C -0.23 -2.99 6.09 -103.27 -0.63 -3.62 16 6 C -0.21 -1.95 8.88 -37.45 -0.33 -2.29 16 7 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 8 O -0.18 -1.73 10.52 7.67 0.08 -1.65 16 9 C 0.04 0.47 11.91 30.08 0.36 0.83 16 10 C 0.15 2.66 2.47 -67.89 -0.17 2.50 16 11 C -0.14 -2.47 5.34 -26.61 -0.14 -2.61 16 12 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 13 N -0.59 -14.88 2.96 -172.31 -0.51 -15.39 16 14 C -0.26 -7.04 9.53 -15.06 -0.14 -7.18 16 15 H 0.06 1.67 7.84 -52.48 -0.41 1.25 16 16 C 0.01 0.27 5.09 -17.43 -0.09 0.18 16 17 N -0.90 -26.18 11.25 55.49 0.62 -25.56 16 18 Si 0.90 21.50 29.56 -169.99 -5.02 16.48 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.18 4.28 5.21 -3.71 -0.02 4.26 16 23 C -0.15 -2.84 5.32 -26.61 -0.14 -2.99 16 24 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 25 H 0.08 0.94 6.47 -51.93 -0.34 0.60 16 26 H 0.08 0.80 4.74 -51.93 -0.25 0.56 16 27 H 0.17 1.31 4.89 -52.49 -0.26 1.05 16 28 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.22 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 31 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 2.25 6.41 -51.93 -0.33 1.92 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -32.77 312.83 -6.30 -39.07 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.18 Total: 0.04 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.61 Total: 2.87 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.37 Total: -50.75 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.17 Total: -12.41 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.77 -6.30 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005110684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.244 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds