Wall clock time and date at job start Tue Mar 31 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34774 * 119.99954 * 2 1 4 4 O 1.21616 * 119.99902 * 180.09087 * 3 2 1 5 5 C 1.47372 * 120.00207 * 0.09890 * 3 2 1 6 6 C 1.47029 * 127.19238 * 350.65276 * 5 3 2 7 7 C 1.34184 * 105.95212 * 179.70057 * 6 5 3 8 8 O 1.34215 * 109.12419 * 0.26172 * 7 6 5 9 9 C 1.33645 * 110.91098 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99721 * 180.02562 * 2 1 3 11 11 C 1.53041 * 109.45801 * 60.06716 * 10 2 1 12 12 C 1.53193 * 109.30878 * 178.61304 * 11 10 2 13 13 N 1.46927 * 108.77731 * 54.63520 * 12 11 10 14 14 C 1.36937 * 120.63061 * 126.40765 * 13 12 11 15 15 H 1.08004 * 120.00220 * 323.59261 * 14 13 12 16 16 C 1.38814 * 119.99726 * 143.58188 * 14 13 12 17 17 N 1.31610 * 120.00098 * 352.64786 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 172.64624 * 16 14 13 19 19 H 1.48499 * 109.47108 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47201 * 120.00275 * 18 16 14 21 21 H 1.48503 * 109.46763 * 240.00114 * 18 16 14 22 22 C 1.46925 * 118.73656 * 306.39420 * 13 12 11 23 23 C 1.53039 * 109.45602 * 299.99980 * 10 2 1 24 24 H 1.08999 * 109.46703 * 84.24759 * 1 2 3 25 25 H 1.08997 * 109.47084 * 204.24691 * 1 2 3 26 26 H 1.09001 * 109.46746 * 324.25319 * 1 2 3 27 27 H 1.07999 * 127.02339 * 359.96363 * 6 5 3 28 28 H 1.08000 * 125.43537 * 180.26277 * 7 6 5 29 29 H 1.08001 * 125.80514 * 179.97438 * 9 8 7 30 30 H 1.08994 * 109.45811 * 180.02562 * 10 2 1 31 31 H 1.08997 * 109.50112 * 298.56693 * 11 10 2 32 32 H 1.09004 * 109.49954 * 58.66654 * 11 10 2 33 33 H 1.09006 * 109.58708 * 294.84654 * 12 11 10 34 34 H 1.09001 * 109.70004 * 174.49617 * 12 11 10 35 35 H 0.97005 * 120.00106 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58829 * 293.81503 * 22 13 12 37 37 H 1.09002 * 109.70049 * 173.46152 * 22 13 12 38 38 H 1.08995 * 109.50103 * 301.33632 * 23 10 2 39 39 H 1.08992 * 109.49664 * 61.43841 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3551 1.1672 -0.0017 5 6 1.4021 2.4435 0.0022 6 6 -0.0434 2.6355 -0.1857 7 6 -0.2541 3.9579 -0.0986 8 8 0.9173 4.5766 0.1162 9 6 1.9190 3.6939 0.1767 10 6 2.1976 -1.2688 -0.0006 11 6 1.8289 -2.0697 -1.2514 12 6 2.6225 -3.3800 -1.2662 13 7 2.3849 -4.0910 -0.0025 14 6 1.9518 -5.3901 -0.0037 15 1 1.2548 -5.7263 -0.7572 16 6 2.4087 -6.2749 0.9634 17 7 3.3644 -5.9092 1.7910 18 14 1.6671 -7.9847 1.0900 19 1 0.6172 -8.1470 0.0525 20 1 2.7294 -9.0016 0.8833 21 1 1.0649 -8.1646 2.4355 22 6 2.6212 -3.3818 1.2623 23 6 1.8276 -2.0716 1.2488 24 1 -0.3633 0.1030 -1.0225 25 1 -0.3633 -0.9370 0.4220 26 1 -0.3633 0.8341 0.6004 27 1 -0.7848 1.8686 -0.3546 28 1 -1.2133 4.4463 -0.1873 29 1 2.9602 3.9299 0.3399 30 1 3.2691 -1.0695 0.0000 31 1 0.7616 -2.2909 -1.2404 32 1 2.0711 -1.4877 -2.1407 33 1 3.6856 -3.1622 -1.3686 34 1 2.2943 -3.9990 -2.1011 35 1 3.6835 -6.5273 2.4671 36 1 3.6842 -3.1642 1.3662 37 1 2.2915 -4.0000 2.0974 38 1 2.0688 -1.4909 2.1390 39 1 0.7604 -2.2927 1.2362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005110684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:42 Heat of formation + Delta-G solvation = -0.944745 kcal Electronic energy + Delta-G solvation = -21934.317095 eV Core-core repulsion = 18651.231876 eV Total energy + Delta-G solvation = -3283.085220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.47864 -41.01988 -38.94608 -36.64985 -34.69472 -33.56855 -31.84400 -31.34415 -30.69250 -28.14462 -27.13698 -24.94357 -23.88251 -23.05075 -22.38590 -20.76626 -20.39913 -18.77661 -18.49032 -17.64045 -17.14810 -17.03996 -16.69789 -16.16622 -15.72118 -15.39468 -15.31373 -14.86028 -14.45194 -14.34965 -14.30434 -14.12068 -13.91793 -13.34405 -13.16917 -12.95490 -12.71437 -12.54243 -12.29259 -12.10422 -11.94234 -11.92652 -11.54164 -11.35122 -11.01767 -10.74095 -10.59793 -9.83332 -9.50156 -8.60193 -7.88690 -5.46173 0.39006 1.18357 1.47311 1.48503 1.59581 1.89517 2.16302 2.29977 2.49907 3.29308 3.55286 3.65544 3.78137 3.93762 4.02982 4.05855 4.23502 4.31511 4.44118 4.54161 4.63552 4.66092 4.68251 4.77781 4.83055 4.92512 5.01995 5.04025 5.06117 5.13189 5.28204 5.39309 5.42758 5.57432 5.64474 5.66261 6.05534 6.42033 6.42617 7.11668 7.14721 7.80298 8.38529 9.18163 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.003703 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.490875 B = 7559.585403 C = 7705.215078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.597 5.597 3 C 0.576 3.424 4 O -0.596 6.596 5 C -0.265 4.265 6 C -0.215 4.215 7 C -0.026 4.026 8 O -0.179 6.179 9 C 0.048 3.952 10 C 0.154 3.846 11 C -0.119 4.119 12 C 0.144 3.856 13 N -0.608 5.608 14 C -0.268 4.268 15 H 0.069 0.931 16 C -0.045 4.045 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.289 1.289 22 C 0.186 3.814 23 C -0.128 4.128 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.194 0.806 28 H 0.251 0.749 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.005 0.995 34 H 0.064 0.936 35 H 0.251 0.749 36 H -0.011 1.011 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 19.500 -4.011 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.327 5.327 3 C 0.367 3.633 4 O -0.480 6.480 5 C -0.269 4.269 6 C -0.234 4.234 7 C -0.091 4.091 8 O -0.074 6.074 9 C -0.023 4.023 10 C 0.050 3.950 11 C -0.159 4.159 12 C 0.018 3.982 13 N -0.331 5.331 14 C -0.398 4.398 15 H 0.086 0.914 16 C -0.241 4.241 17 N -0.582 5.582 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.220 1.220 21 H -0.216 1.216 22 C 0.060 3.940 23 C -0.167 4.167 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.211 0.789 28 H 0.267 0.733 29 H 0.242 0.758 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.211 19.689 -3.878 22.986 hybrid contribution 0.424 -1.501 0.368 1.602 sum -10.787 18.188 -3.510 21.436 Atomic orbital electron populations 1.22712 0.77702 1.04833 1.03335 1.47860 1.08456 1.04717 1.71665 1.17868 0.86126 0.83937 0.75343 1.90750 1.15421 1.88053 1.53756 1.21426 0.96027 0.93209 1.16277 1.23876 0.93736 0.98267 1.07492 1.24859 0.89090 0.92102 1.03039 1.83853 1.16131 1.37982 1.69405 1.24620 0.93799 0.86096 0.97827 1.20825 0.96101 0.82150 0.95882 1.22147 1.01324 0.96050 0.96384 1.21010 0.95641 0.92389 0.89166 1.44226 1.78099 1.10304 1.00517 1.19522 1.19800 0.86422 1.14030 0.91389 1.26122 0.96779 1.01530 0.99644 1.70149 1.29756 1.36574 1.21708 0.85143 0.77719 0.79561 0.77626 1.18606 1.21975 1.21550 1.20433 0.94047 0.90096 0.89421 1.22305 1.01290 0.96702 0.96446 0.90413 0.90684 0.87593 0.78933 0.73345 0.75822 0.91824 0.90724 0.91299 0.97694 0.91706 0.94015 0.99280 0.92700 0.92696 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 7.80 127.77 1.00 2.11 16 2 N -0.60 -17.91 2.76 -826.35 -2.28 -20.19 16 3 C 0.58 18.65 7.67 86.65 0.66 19.32 16 4 O -0.60 -24.36 16.26 -4.08 -0.07 -24.43 16 5 C -0.26 -6.31 6.09 -18.99 -0.12 -6.42 16 6 C -0.22 -3.31 8.88 23.65 0.21 -3.10 16 7 C -0.03 -0.29 12.03 66.89 0.80 0.51 16 8 O -0.18 -2.92 10.52 4.54 0.05 -2.88 16 9 C 0.05 0.95 11.91 67.40 0.80 1.76 16 10 C 0.15 5.64 2.47 45.02 0.11 5.76 16 11 C -0.12 -4.16 5.34 30.67 0.16 -3.99 16 12 C 0.14 6.21 6.52 86.36 0.56 6.77 16 13 N -0.61 -31.13 2.96 -699.07 -2.07 -33.20 16 14 C -0.27 -14.70 9.53 84.03 0.80 -13.89 16 15 H 0.07 3.60 7.84 -2.91 -0.02 3.57 16 16 C -0.04 -2.51 5.09 84.86 0.43 -2.08 16 17 N -0.94 -56.23 11.25 21.65 0.24 -55.99 16 18 Si 0.97 44.53 29.56 68.60 2.03 46.55 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 C 0.19 9.36 5.21 86.36 0.45 9.81 16 23 C -0.13 -5.01 5.32 30.67 0.16 -4.84 16 24 H 0.08 1.25 7.71 -2.39 -0.02 1.24 16 25 H 0.07 1.58 6.47 -2.39 -0.02 1.56 16 26 H 0.11 1.67 4.74 -2.39 -0.01 1.66 16 27 H 0.19 2.03 4.89 -2.91 -0.01 2.02 16 28 H 0.25 0.37 8.06 -2.91 -0.02 0.35 16 29 H 0.23 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.06 2.77 6.90 -2.39 -0.02 2.76 16 31 H 0.07 2.42 7.72 -2.39 -0.02 2.40 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 35 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 37 H 0.05 3.05 6.41 -2.39 -0.02 3.04 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.61 6.72 -2.39 -0.02 2.59 16 Total: -1.00 -73.99 312.83 5.01 -68.99 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.06 Total: 9.42 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.05 Total: 11.71 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.11 Total: -109.37 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.02 Total: -27.30 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.99 5.01 -68.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005110684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.041 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds