Wall clock time and date at job start Tue Mar 31 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00195 * 2 1 4 4 C 1.53000 * 109.47108 * 269.99752 * 3 2 1 5 5 H 1.09002 * 109.52000 * 59.99904 * 4 3 2 6 6 C 1.53137 * 109.52457 * 180.12948 * 4 3 2 7 7 O 1.43077 * 109.15392 * 175.21685 * 6 4 3 8 8 C 1.43077 * 113.58976 * 302.04622 * 7 6 4 9 9 C 1.53151 * 109.14946 * 57.94768 * 8 7 6 10 10 O 1.43069 * 109.20534 * 304.72271 * 9 8 7 11 11 C 1.38827 * 120.00130 * 179.97438 * 2 1 3 12 12 C 1.39797 * 119.58147 * 5.00771 * 11 2 1 13 13 C 1.38597 * 119.49079 * 180.02562 * 12 11 2 14 14 C 1.38394 * 118.67880 * 359.97438 * 13 12 11 15 15 C 1.40556 * 119.14743 * 0.28129 * 14 13 12 16 16 C 1.41311 * 119.78015 * 179.69956 * 15 14 13 17 17 H 1.08007 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.40031 * 120.00128 * 180.02562 * 16 15 14 19 19 N 1.30749 * 119.99480 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47080 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47349 * 119.99296 * 20 18 16 23 23 H 1.48503 * 109.46723 * 239.99925 * 20 18 16 24 24 N 1.31951 * 119.58747 * 185.02339 * 11 2 1 25 25 H 1.08995 * 109.47244 * 270.00139 * 1 2 3 26 26 H 1.09004 * 109.47075 * 30.00437 * 1 2 3 27 27 H 1.09002 * 109.47065 * 150.00043 * 1 2 3 28 28 H 1.08998 * 109.46965 * 29.99937 * 3 2 1 29 29 H 1.08998 * 109.47197 * 149.99492 * 3 2 1 30 30 H 1.09010 * 109.52489 * 295.11791 * 6 4 3 31 31 H 1.09007 * 109.52520 * 55.30947 * 6 4 3 32 32 H 1.08996 * 109.52590 * 177.85355 * 8 7 6 33 33 H 1.08997 * 109.52324 * 297.98838 * 8 7 6 34 34 H 1.09000 * 109.51846 * 64.59555 * 9 8 7 35 35 H 1.08994 * 109.52230 * 184.71760 * 9 8 7 36 36 H 1.07999 * 120.25577 * 359.97438 * 12 11 2 37 37 H 1.08000 * 120.66257 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.42156 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99646 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5006 1.8409 -1.9572 6 6 3.2211 3.0349 -1.4439 7 8 3.5528 3.3838 -2.7913 8 6 4.3299 2.3895 -3.4655 9 6 3.5613 1.0648 -3.4640 10 8 3.2284 0.7153 -2.1171 11 6 2.1591 -1.2023 0.0005 12 6 1.4554 -2.4055 -0.1050 13 6 2.1502 -3.6047 -0.1038 14 6 3.5297 -3.5729 0.0023 15 6 4.1795 -2.3313 0.1109 16 6 5.5871 -2.2835 0.2263 17 1 6.1600 -3.1991 0.2312 18 6 6.2391 -1.0490 0.3353 19 7 5.5456 0.0593 0.3299 20 14 8.0999 -0.9857 0.4871 21 1 8.6454 -2.3668 0.4678 22 1 8.6634 -0.2146 -0.6499 23 1 8.4700 -0.3256 1.7649 24 7 3.4748 -1.1949 0.1010 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1384 0.5139 30 1 2.5998 3.8171 -1.0075 31 1 4.1353 2.9263 -0.8601 32 1 4.5116 2.7041 -4.4931 33 1 5.2817 2.2600 -2.9504 34 1 2.6473 1.1734 -4.0477 35 1 4.1821 0.2830 -3.9014 36 1 0.3784 -2.4008 -0.1861 37 1 1.6257 -4.5453 -0.1848 38 1 4.0993 -4.4905 0.0057 39 1 5.9972 0.9144 0.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118536932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:06 Heat of formation + Delta-G solvation = -31.863203 kcal Electronic energy + Delta-G solvation = -23008.370477 eV Core-core repulsion = 19723.944533 eV Total energy + Delta-G solvation = -3284.425945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -39.45236 -38.20169 -35.90552 -35.05884 -33.30557 -31.65588 -30.32320 -29.17258 -28.23281 -26.37978 -25.35722 -24.21125 -22.65147 -21.07340 -20.56095 -19.63086 -17.37036 -16.38809 -16.19074 -16.06829 -15.37456 -14.94188 -14.76200 -14.67003 -14.20671 -14.09521 -13.59208 -13.11248 -12.79650 -12.76603 -12.18008 -12.04505 -11.87356 -11.52276 -11.34956 -11.24146 -11.13507 -10.91177 -10.75109 -10.47612 -10.30176 -10.18557 -9.86064 -9.80264 -9.32738 -8.65930 -8.54196 -7.76104 -7.31825 -6.29905 -6.21174 -4.34910 2.92923 3.15079 3.19238 3.36079 3.37165 3.93708 4.04543 4.07567 4.35012 4.94377 5.05585 5.33721 5.38849 5.46233 5.52681 5.66832 5.67996 5.80012 5.84531 5.96917 5.99020 6.11405 6.18211 6.21600 6.29351 6.31446 6.66605 6.79572 6.90588 6.99795 7.17419 7.25428 7.31136 7.67165 7.82755 7.94094 8.05297 8.10847 8.47555 8.64302 8.91617 9.23227 10.35763 10.51970 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.009692 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.603076 B = 2888.302455 C = 4457.955018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.619 5.619 3 C 0.140 3.860 4 C 0.048 3.952 5 H 0.045 0.955 6 C 0.032 3.968 7 O -0.388 6.388 8 C 0.028 3.972 9 C 0.024 3.976 10 O -0.316 6.316 11 C 0.419 3.581 12 C -0.368 4.368 13 C -0.034 4.034 14 C -0.319 4.319 15 C 0.293 3.707 16 C -0.434 4.434 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.703 5.703 20 Si 0.897 3.103 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 N -0.505 5.505 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 6.375 -3.433 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.336 5.336 3 C 0.016 3.984 4 C -0.013 4.013 5 H 0.062 0.938 6 C -0.045 4.045 7 O -0.307 6.307 8 C -0.049 4.049 9 C -0.054 4.054 10 O -0.233 6.233 11 C 0.180 3.820 12 C -0.394 4.394 13 C -0.058 4.058 14 C -0.342 4.342 15 C 0.165 3.835 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.149 4.149 19 N -0.324 5.324 20 Si 0.722 3.278 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.202 1.202 24 N -0.225 5.225 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.839 7.461 -3.337 9.030 hybrid contribution 0.286 -0.756 -0.240 0.844 sum -3.553 6.705 -3.577 8.389 Atomic orbital electron populations 1.21398 0.81073 1.01371 0.99811 1.45767 1.03145 1.03082 1.81630 1.21198 0.99670 0.84953 0.92611 1.23155 0.92936 0.88611 0.96581 0.93756 1.23206 1.00404 0.97207 0.83686 1.87979 1.73157 1.43258 1.26352 1.23192 0.94673 0.89391 0.97655 1.23080 0.98643 0.96872 0.86788 1.88618 1.71860 1.40165 1.22696 1.18361 0.90318 0.83518 0.89795 1.20634 0.97758 0.92659 1.28314 1.20545 0.94117 0.95520 0.95652 1.21524 0.93939 0.98122 1.20635 1.18199 0.93083 0.85650 0.86536 1.19519 0.90614 0.93172 1.43337 0.90326 1.25940 0.99442 0.95654 0.93902 1.70168 1.35557 0.97645 1.29062 0.86451 0.83735 0.79344 0.78262 1.18671 1.20189 1.20157 1.68184 1.02112 1.28762 1.23406 0.94692 0.93141 0.91725 0.92046 0.86338 0.88869 0.91381 0.88922 0.92066 0.93840 0.88618 0.89296 0.89262 0.89078 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.27 59.85 0.61 2.34 16 2 N -0.62 -12.62 2.93 -181.69 -0.53 -13.16 16 3 C 0.14 2.62 5.21 -4.04 -0.02 2.60 16 4 C 0.05 0.85 3.11 -26.66 -0.08 0.77 16 5 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 6 C 0.03 0.51 6.34 37.23 0.24 0.75 16 7 O -0.39 -6.39 10.85 -48.76 -0.53 -6.92 16 8 C 0.03 0.43 7.05 37.24 0.26 0.69 16 9 C 0.02 0.41 7.05 37.24 0.26 0.68 16 10 O -0.32 -6.65 9.30 -48.76 -0.45 -7.10 16 11 C 0.42 10.26 6.83 -155.32 -1.06 9.20 16 12 C -0.37 -8.70 9.29 -38.87 -0.36 -9.06 16 13 C -0.03 -0.81 10.15 -39.39 -0.40 -1.21 16 14 C -0.32 -8.22 9.83 -38.65 -0.38 -8.60 16 15 C 0.29 8.11 6.55 -85.00 -0.56 7.55 16 16 C -0.43 -11.69 9.14 -37.74 -0.34 -12.04 16 17 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 18 C 0.08 1.90 5.50 -17.34 -0.10 1.80 16 19 N -0.70 -17.70 10.97 55.55 0.61 -17.09 16 20 Si 0.90 18.66 29.56 -169.99 -5.02 13.64 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 N -0.50 -13.52 6.01 -10.33 -0.06 -13.58 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.06 1.04 5.96 -51.93 -0.31 0.73 16 28 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.12 2.61 6.79 -51.93 -0.35 2.26 16 30 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.88 6.01 -52.49 -0.32 1.56 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.26 6.07 8.29 -40.82 -0.34 5.74 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -30.24 319.54 -8.69 -38.93 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.59 Total: 4.98 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.93 Total: -4.53 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.01 Total: -43.82 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.98 Total: -14.02 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.24 -8.69 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118536932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.066 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds