Wall clock time and date at job start Tue Mar 31 2020 01:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00195 * 2 1 4 4 C 1.53000 * 109.47108 * 269.99752 * 3 2 1 5 5 H 1.09002 * 109.52000 * 59.99904 * 4 3 2 6 6 C 1.53137 * 109.52457 * 180.12948 * 4 3 2 7 7 O 1.43077 * 109.15392 * 175.21685 * 6 4 3 8 8 C 1.43077 * 113.58976 * 302.04622 * 7 6 4 9 9 C 1.53151 * 109.14946 * 57.94768 * 8 7 6 10 10 O 1.43069 * 109.20534 * 304.72271 * 9 8 7 11 11 C 1.38827 * 120.00130 * 179.97438 * 2 1 3 12 12 C 1.39797 * 119.58147 * 5.00771 * 11 2 1 13 13 C 1.38597 * 119.49079 * 180.02562 * 12 11 2 14 14 C 1.38394 * 118.67880 * 359.97438 * 13 12 11 15 15 C 1.40556 * 119.14743 * 0.28129 * 14 13 12 16 16 C 1.41311 * 119.78015 * 179.69956 * 15 14 13 17 17 H 1.08007 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.40031 * 120.00128 * 180.02562 * 16 15 14 19 19 N 1.30749 * 119.99480 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00330 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47080 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47349 * 119.99296 * 20 18 16 23 23 H 1.48503 * 109.46723 * 239.99925 * 20 18 16 24 24 N 1.31951 * 119.58747 * 185.02339 * 11 2 1 25 25 H 1.08995 * 109.47244 * 270.00139 * 1 2 3 26 26 H 1.09004 * 109.47075 * 30.00437 * 1 2 3 27 27 H 1.09002 * 109.47065 * 150.00043 * 1 2 3 28 28 H 1.08998 * 109.46965 * 29.99937 * 3 2 1 29 29 H 1.08998 * 109.47197 * 149.99492 * 3 2 1 30 30 H 1.09010 * 109.52489 * 295.11791 * 6 4 3 31 31 H 1.09007 * 109.52520 * 55.30947 * 6 4 3 32 32 H 1.08996 * 109.52590 * 177.85355 * 8 7 6 33 33 H 1.08997 * 109.52324 * 297.98838 * 8 7 6 34 34 H 1.09000 * 109.51846 * 64.59555 * 9 8 7 35 35 H 1.08994 * 109.52230 * 184.71760 * 9 8 7 36 36 H 1.07999 * 120.25577 * 359.97438 * 12 11 2 37 37 H 1.08000 * 120.66257 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.42156 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99646 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5006 1.8409 -1.9572 6 6 3.2211 3.0349 -1.4439 7 8 3.5528 3.3838 -2.7913 8 6 4.3299 2.3895 -3.4655 9 6 3.5613 1.0648 -3.4640 10 8 3.2284 0.7153 -2.1171 11 6 2.1591 -1.2023 0.0005 12 6 1.4554 -2.4055 -0.1050 13 6 2.1502 -3.6047 -0.1038 14 6 3.5297 -3.5729 0.0023 15 6 4.1795 -2.3313 0.1109 16 6 5.5871 -2.2835 0.2263 17 1 6.1600 -3.1991 0.2312 18 6 6.2391 -1.0490 0.3353 19 7 5.5456 0.0593 0.3299 20 14 8.0999 -0.9857 0.4871 21 1 8.6454 -2.3668 0.4678 22 1 8.6634 -0.2146 -0.6499 23 1 8.4700 -0.3256 1.7649 24 7 3.4748 -1.1949 0.1010 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5138 29 1 3.1499 1.1384 0.5139 30 1 2.5998 3.8171 -1.0075 31 1 4.1353 2.9263 -0.8601 32 1 4.5116 2.7041 -4.4931 33 1 5.2817 2.2600 -2.9504 34 1 2.6473 1.1734 -4.0477 35 1 4.1821 0.2830 -3.9014 36 1 0.3784 -2.4008 -0.1861 37 1 1.6257 -4.5453 -0.1848 38 1 4.0993 -4.4905 0.0057 39 1 5.9972 0.9144 0.4050 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118536932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:05 Heat of formation + Delta-G solvation = -49.699333 kcal Electronic energy + Delta-G solvation = -23009.143910 eV Core-core repulsion = 19723.944533 eV Total energy + Delta-G solvation = -3285.199377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82779 -39.96554 -37.43438 -36.54426 -35.15898 -33.06631 -32.18942 -30.95481 -29.62796 -27.78649 -27.16460 -25.69544 -24.13981 -22.88319 -22.01360 -21.29589 -19.23584 -17.85158 -17.67977 -17.47306 -16.79779 -16.44942 -16.34822 -16.21717 -15.91458 -15.66072 -15.10298 -14.82433 -14.38334 -14.17577 -13.81261 -13.63447 -13.34574 -12.86134 -12.82962 -12.77135 -12.68392 -12.57842 -12.39492 -12.20152 -12.01021 -11.64325 -11.50594 -11.28283 -11.10610 -10.36103 -9.97556 -9.65758 -9.20810 -8.08481 -8.01565 -6.33362 1.14946 1.43646 1.46821 1.55647 1.60115 2.29768 2.48187 2.81601 2.97885 3.05973 3.75791 4.04620 4.08561 4.17064 4.20063 4.22547 4.34197 4.43160 4.46874 4.58002 4.59417 4.69571 4.72716 4.84881 4.90219 4.94731 4.98382 5.07674 5.08224 5.20138 5.43952 5.46314 5.83704 5.99528 6.06527 6.19882 6.25266 6.45885 6.74055 6.79518 7.02116 7.33250 8.48572 8.63125 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.009692 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.603076 B = 2888.302455 C = 4457.955018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.621 5.621 3 C 0.139 3.861 4 C 0.051 3.949 5 H 0.054 0.946 6 C 0.038 3.962 7 O -0.392 6.392 8 C 0.034 3.966 9 C 0.020 3.980 10 O -0.359 6.359 11 C 0.402 3.598 12 C -0.375 4.375 13 C -0.034 4.034 14 C -0.352 4.352 15 C 0.259 3.741 16 C -0.470 4.470 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.718 5.718 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.268 1.268 24 N -0.521 5.521 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 7.946 -3.803 10.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.338 5.338 3 C 0.014 3.986 4 C -0.009 4.009 5 H 0.072 0.928 6 C -0.039 4.039 7 O -0.311 6.311 8 C -0.043 4.043 9 C -0.058 4.058 10 O -0.277 6.277 11 C 0.162 3.838 12 C -0.400 4.400 13 C -0.059 4.059 14 C -0.375 4.375 15 C 0.132 3.868 16 C -0.502 4.502 17 H 0.092 0.908 18 C -0.189 4.189 19 N -0.339 5.339 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.193 1.193 24 N -0.242 5.242 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.829 9.054 -3.710 10.912 hybrid contribution 0.441 -1.220 -0.134 1.305 sum -4.388 7.834 -3.844 9.767 Atomic orbital electron populations 1.21632 0.78360 1.02814 1.01141 1.46035 1.04803 1.02283 1.80658 1.21268 0.98655 0.85245 0.93384 1.23185 0.93236 0.88813 0.95687 0.92790 1.23215 0.99967 0.97261 0.83471 1.87977 1.73138 1.43412 1.26533 1.23213 0.93449 0.88514 0.99139 1.23197 0.99351 0.97649 0.85560 1.88561 1.72618 1.42117 1.24411 1.18824 0.90162 0.85536 0.89257 1.21008 0.99172 0.92427 1.27409 1.20909 0.93522 0.97153 0.94277 1.21654 0.95198 0.97769 1.22922 1.18651 0.93998 0.86832 0.87335 1.19760 0.91027 0.94054 1.45348 0.90771 1.26653 1.03958 0.94835 0.93409 1.70255 1.37330 0.98035 1.28297 0.85337 0.77736 0.79164 0.78489 1.18764 1.19479 1.19321 1.68195 1.03307 1.28482 1.24203 0.93265 0.90024 0.91959 0.88185 0.90019 0.85544 0.93100 0.85672 0.93588 0.92625 0.89279 0.86652 0.86153 0.88951 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.00 10.27 127.77 1.31 4.31 16 2 N -0.62 -24.48 2.93 -728.74 -2.13 -26.61 16 3 C 0.14 5.00 5.21 86.38 0.45 5.45 16 4 C 0.05 1.73 3.11 30.64 0.10 1.83 16 5 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 6 C 0.04 1.13 6.34 72.03 0.46 1.59 16 7 O -0.39 -12.05 10.85 -136.05 -1.48 -13.52 16 8 C 0.03 0.99 7.05 72.03 0.51 1.50 16 9 C 0.02 0.67 7.05 72.03 0.51 1.18 16 10 O -0.36 -15.09 9.30 -136.05 -1.27 -16.35 16 11 C 0.40 19.74 6.83 133.42 0.91 20.65 16 12 C -0.37 -17.44 9.29 22.73 0.21 -17.23 16 13 C -0.03 -1.63 10.15 22.39 0.23 -1.40 16 14 C -0.35 -18.73 9.83 22.87 0.22 -18.51 16 15 C 0.26 14.92 6.55 40.18 0.26 15.19 16 16 C -0.47 -26.35 9.14 23.46 0.21 -26.14 16 17 H 0.07 4.03 7.85 -2.91 -0.02 4.00 16 18 C 0.04 1.80 5.50 85.29 0.47 2.26 16 19 N -0.72 -37.05 10.97 21.84 0.24 -36.81 16 20 Si 0.97 39.01 29.56 68.60 2.03 41.04 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 N -0.52 -28.62 6.01 -186.59 -1.12 -29.74 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.86 8.07 -2.38 -0.02 1.85 16 27 H 0.06 1.83 5.96 -2.39 -0.01 1.82 16 28 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 29 H 0.08 3.63 6.79 -2.39 -0.02 3.61 16 30 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.13 2.82 8.14 -2.39 -0.02 2.81 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.12 4.64 6.01 -2.91 -0.02 4.62 16 37 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.09 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.27 12.67 8.29 -92.71 -0.77 11.90 16 Total: -1.00 -67.23 319.54 3.16 -64.07 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 1.04 Total: 27.24 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.85 Total: -9.33 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.02 Total: -93.16 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -2.74 Total: -29.87 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -67.23 3.16 -64.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118536932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.373 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds