Wall clock time and date at job start Tue Mar 31 2020 00:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47068 * 2 1 4 4 C 1.35906 * 117.00154 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.47656 * 0.02562 * 4 3 2 6 6 N 1.31809 * 120.68287 * 180.02562 * 5 4 3 7 7 C 1.31874 * 121.78242 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.89110 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.39200 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47143 * 90.00076 * 9 8 7 11 11 C 1.47961 * 111.00270 * 170.00071 * 10 9 8 12 12 C 1.53934 * 86.18427 * 222.41862 * 11 10 9 13 13 O 1.42895 * 113.73076 * 269.25870 * 12 11 10 14 14 C 1.50696 * 113.73266 * 138.07361 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47958 * 110.99863 * 70.64193 * 10 9 8 23 23 C 1.38585 * 119.21874 * 0.23481 * 8 7 6 24 24 H 1.08992 * 109.47298 * 300.00125 * 1 2 3 25 25 H 1.09001 * 109.46699 * 60.00179 * 1 2 3 26 26 H 1.08994 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47607 * 240.00251 * 2 1 3 28 28 H 1.08997 * 109.47170 * 119.99742 * 2 1 3 29 29 H 1.07997 * 119.65695 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.55419 * 180.02562 * 7 6 5 31 31 H 1.09005 * 109.46817 * 330.00174 * 9 8 7 32 32 H 1.08999 * 109.46747 * 210.00586 * 9 8 7 33 33 H 1.08996 * 113.76309 * 108.09300 * 11 10 9 34 34 H 1.09008 * 113.85816 * 336.74814 * 11 10 9 35 35 H 0.96697 * 114.00066 * 178.10080 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08993 * 113.76569 * 23.26601 * 22 10 9 38 38 H 1.09005 * 113.75789 * 251.89882 * 22 10 9 39 39 H 1.08004 * 120.81057 * 179.72403 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.2080 0.4322 0.0005 6 7 5.5154 0.6002 0.0016 7 6 6.0614 1.8006 0.0021 8 6 5.2755 2.9376 0.0022 9 6 5.9114 4.3039 0.0034 10 7 6.1190 4.7486 -1.3811 11 6 6.5173 6.1728 -1.4265 12 6 5.5476 6.2997 -2.6153 13 8 6.1604 6.0656 -3.8848 14 6 4.7150 7.5554 -2.5875 15 1 4.8332 8.2641 -1.7811 16 6 3.8028 7.8001 -3.5921 17 7 3.0765 8.8962 -3.5682 18 14 3.5988 6.5747 -4.9872 19 1 4.5316 6.9200 -6.0898 20 1 3.9010 5.2073 -4.4931 21 1 2.2015 6.6226 -5.4876 22 6 4.8304 5.0677 -2.0343 23 6 3.8959 2.8064 0.0066 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7976 -0.5667 0.0005 30 1 7.1371 1.8966 0.0026 31 1 6.8712 4.2574 0.5180 32 1 5.2574 5.0084 0.5173 33 1 7.5625 6.3283 -1.6937 34 1 6.2134 6.7439 -0.5491 35 1 5.5488 6.1157 -4.6320 36 1 2.4350 9.0685 -4.2751 37 1 4.0321 5.3139 -1.3343 38 1 4.5277 4.3401 -2.7874 39 1 3.2574 3.6775 0.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118757483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:30 Heat of formation + Delta-G solvation = -0.878785 kcal Electronic energy + Delta-G solvation = -21687.026644 eV Core-core repulsion = 18403.944285 eV Total energy + Delta-G solvation = -3283.082360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74160 -39.40413 -38.22890 -35.13974 -32.94633 -32.44992 -32.22753 -30.12779 -28.47933 -26.11460 -25.45162 -24.19691 -23.36549 -22.54177 -20.91813 -19.12007 -18.03820 -17.31391 -16.83998 -16.68373 -16.37520 -16.14042 -15.36347 -14.60247 -14.39299 -14.05068 -13.90759 -13.33289 -13.09093 -12.97687 -12.92668 -12.76303 -12.67827 -12.56204 -12.08275 -11.76543 -11.65983 -11.25240 -11.15804 -10.96582 -10.59374 -10.51531 -10.00419 -9.64780 -9.41689 -9.19808 -8.89617 -8.64167 -8.38783 -8.07078 -6.34923 -4.39120 1.11919 1.33368 2.95010 3.06153 3.13631 3.21069 3.78334 4.11760 4.42676 4.56836 4.60712 4.63846 4.76342 4.79699 4.91318 4.94438 5.06612 5.16135 5.25522 5.35372 5.46619 5.50717 5.65718 5.73741 5.78112 5.85716 5.91802 5.97149 6.17344 6.32369 6.43105 6.52114 6.59821 6.85451 6.89737 7.16562 7.31905 7.66133 7.96503 8.12424 8.66266 8.67380 9.24817 10.77626 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.005225 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.100136 B = 5357.592923 C = 6386.158082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.310 6.310 4 C 0.079 3.921 5 C 0.007 3.993 6 N -0.453 5.453 7 C 0.077 3.923 8 C -0.075 4.075 9 C 0.057 3.943 10 N -0.472 5.472 11 C 0.024 3.976 12 C 0.201 3.799 13 O -0.551 6.551 14 C -0.538 4.538 15 H 0.086 0.914 16 C 0.079 3.921 17 N -0.882 5.882 18 Si 0.858 3.142 19 H -0.267 1.267 20 H -0.254 1.254 21 H -0.286 1.286 22 C -0.028 4.028 23 C -0.102 4.102 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.348 0.652 36 H 0.269 0.731 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -15.865 7.975 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.032 3.968 5 C -0.151 4.151 6 N -0.161 5.161 7 C -0.081 4.081 8 C -0.078 4.078 9 C -0.072 4.072 10 N -0.194 5.194 11 C -0.104 4.104 12 C 0.160 3.840 13 O -0.361 6.361 14 C -0.575 4.575 15 H 0.104 0.896 16 C -0.125 4.125 17 N -0.518 5.518 18 Si 0.687 3.313 19 H -0.194 1.194 20 H -0.179 1.179 21 H -0.213 1.213 22 C -0.157 4.157 23 C -0.129 4.129 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.199 0.801 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.789 -16.923 7.997 18.734 hybrid contribution -1.858 0.555 -0.701 2.062 sum -2.647 -16.368 7.296 18.115 Atomic orbital electron populations 1.21772 0.92541 1.02841 1.03768 1.22818 0.96149 0.81902 1.01451 1.86101 1.18331 1.29311 1.88581 1.19978 0.83481 0.95081 0.98271 1.22790 0.89623 0.97954 1.04746 1.67515 1.12170 1.26404 1.10055 1.22521 1.00507 0.86547 0.98559 1.20678 0.92679 0.97293 0.97113 1.21590 1.00072 0.91575 0.93946 1.68695 1.20267 1.19319 1.11141 1.24041 1.00932 0.87491 0.97978 1.20452 0.90035 0.91869 0.81611 1.86463 1.39616 1.94314 1.15734 1.21393 1.19860 1.05056 1.11214 0.89589 1.24993 0.94941 0.94978 0.97616 1.69872 1.23604 1.24659 1.33669 0.87331 0.77908 0.82736 0.83334 1.19382 1.17921 1.21275 1.25034 0.91981 0.99743 0.98924 1.20936 0.94798 0.95593 1.01585 0.91438 0.91329 0.90326 0.91880 0.91947 0.82985 0.82466 0.89622 0.92801 0.89832 0.90606 0.80071 0.92092 0.90907 0.91058 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.05 0.47 5.47 37.16 0.20 0.67 16 3 O -0.31 -4.09 10.15 -19.44 -0.20 -4.28 16 4 C 0.08 1.13 6.71 -39.07 -0.26 0.87 16 5 C 0.01 0.09 10.22 -17.37 -0.18 -0.08 16 6 N -0.45 -6.77 10.35 -13.13 -0.14 -6.90 16 7 C 0.08 1.13 10.85 -17.54 -0.19 0.94 16 8 C -0.08 -1.14 5.13 -104.51 -0.54 -1.68 16 9 C 0.06 0.87 4.99 -4.98 -0.02 0.85 16 10 N -0.47 -8.99 6.25 -239.68 -1.50 -10.49 16 11 C 0.02 0.48 7.36 -2.77 -0.02 0.46 16 12 C 0.20 4.78 1.05 -90.84 -0.10 4.68 16 13 O -0.55 -13.65 13.32 -35.23 -0.47 -14.12 16 14 C -0.54 -14.53 9.20 -34.44 -0.32 -14.85 16 15 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.88 -25.65 13.96 55.43 0.77 -24.87 16 18 Si 0.86 20.18 24.34 -169.99 -4.14 16.04 16 19 H -0.27 -6.10 7.06 56.52 0.40 -5.70 16 20 H -0.25 -5.77 5.28 56.52 0.30 -5.47 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.03 -0.59 5.56 -2.76 -0.02 -0.60 16 23 C -0.10 -1.56 9.10 -39.13 -0.36 -1.92 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 28 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 29 H 0.15 1.59 6.32 -52.49 -0.33 1.26 16 30 H 0.16 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 32 H 0.05 0.81 7.64 -51.93 -0.40 0.42 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.42 7.75 -51.92 -0.40 1.02 16 35 H 0.35 8.33 3.31 45.56 0.15 8.48 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.52 7.14 -51.93 -0.37 1.15 16 38 H 0.07 1.59 6.98 -51.93 -0.36 1.23 16 39 H 0.14 2.14 7.54 -52.48 -0.40 1.75 16 LS Contribution 316.34 15.07 4.77 4.77 Total: -1.00 -30.95 316.34 -7.51 -38.46 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.10 Total: 10.72 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.51 Total: -9.32 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.86 Total: -42.26 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.67 Total: -18.41 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.14 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.95 -7.51 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118757483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.584 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds