Wall clock time and date at job start Tue Mar 31 2020 00:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47068 * 2 1 4 4 C 1.35906 * 117.00154 * 179.97438 * 3 2 1 5 5 C 1.38748 * 120.47656 * 0.02562 * 4 3 2 6 6 N 1.31809 * 120.68287 * 180.02562 * 5 4 3 7 7 C 1.31874 * 121.78242 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.89110 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.39200 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.47143 * 90.00076 * 9 8 7 11 11 C 1.47961 * 111.00270 * 170.00071 * 10 9 8 12 12 C 1.53934 * 86.18427 * 222.41862 * 11 10 9 13 13 O 1.42895 * 113.73076 * 269.25870 * 12 11 10 14 14 C 1.50696 * 113.73266 * 138.07361 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47958 * 110.99863 * 70.64193 * 10 9 8 23 23 C 1.38585 * 119.21874 * 0.23481 * 8 7 6 24 24 H 1.08992 * 109.47298 * 300.00125 * 1 2 3 25 25 H 1.09001 * 109.46699 * 60.00179 * 1 2 3 26 26 H 1.08994 * 109.46900 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47607 * 240.00251 * 2 1 3 28 28 H 1.08997 * 109.47170 * 119.99742 * 2 1 3 29 29 H 1.07997 * 119.65695 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.55419 * 180.02562 * 7 6 5 31 31 H 1.09005 * 109.46817 * 330.00174 * 9 8 7 32 32 H 1.08999 * 109.46747 * 210.00586 * 9 8 7 33 33 H 1.08996 * 113.76309 * 108.09300 * 11 10 9 34 34 H 1.09008 * 113.85816 * 336.74814 * 11 10 9 35 35 H 0.96697 * 114.00066 * 178.10080 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08993 * 113.76569 * 23.26601 * 22 10 9 38 38 H 1.09005 * 113.75789 * 251.89882 * 22 10 9 39 39 H 1.08004 * 120.81057 * 179.72403 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.2080 0.4322 0.0005 6 7 5.5154 0.6002 0.0016 7 6 6.0614 1.8006 0.0021 8 6 5.2755 2.9376 0.0022 9 6 5.9114 4.3039 0.0034 10 7 6.1190 4.7486 -1.3811 11 6 6.5173 6.1728 -1.4265 12 6 5.5476 6.2997 -2.6153 13 8 6.1604 6.0656 -3.8848 14 6 4.7150 7.5554 -2.5875 15 1 4.8332 8.2641 -1.7811 16 6 3.8028 7.8001 -3.5921 17 7 3.0765 8.8962 -3.5682 18 14 3.5988 6.5747 -4.9872 19 1 4.5316 6.9200 -6.0898 20 1 3.9010 5.2073 -4.4931 21 1 2.2015 6.6226 -5.4876 22 6 4.8304 5.0677 -2.0343 23 6 3.8959 2.8064 0.0066 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7976 -0.5667 0.0005 30 1 7.1371 1.8966 0.0026 31 1 6.8712 4.2574 0.5180 32 1 5.2574 5.0084 0.5173 33 1 7.5625 6.3283 -1.6937 34 1 6.2134 6.7439 -0.5491 35 1 5.5488 6.1157 -4.6320 36 1 2.4350 9.0685 -4.2751 37 1 4.0321 5.3139 -1.3343 38 1 4.5277 4.3401 -2.7874 39 1 3.2574 3.6775 0.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118757483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:29 Heat of formation + Delta-G solvation = -26.009855 kcal Electronic energy + Delta-G solvation = -21688.116409 eV Core-core repulsion = 18403.944285 eV Total energy + Delta-G solvation = -3284.172125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.85165 -40.94350 -39.26528 -36.86608 -34.55359 -34.15001 -33.10385 -31.11933 -30.01334 -27.78557 -27.10193 -25.29097 -24.46079 -23.77674 -22.07872 -20.89022 -19.41522 -18.95117 -18.20122 -17.77030 -17.72946 -17.23146 -16.95873 -16.12572 -15.77835 -15.30159 -15.08809 -14.87720 -14.74464 -14.34937 -14.16190 -13.95704 -13.76047 -13.54141 -13.53600 -13.09306 -12.89230 -12.68035 -12.43400 -12.41998 -12.17097 -11.92771 -11.87648 -11.24559 -11.00497 -10.58491 -10.52384 -10.39401 -9.68206 -9.44838 -8.46419 -6.55361 0.02513 0.22941 1.18445 1.25092 1.32877 2.07884 2.13559 2.65804 2.77985 3.06079 3.42321 3.57204 3.59188 3.74025 3.94248 3.95585 4.02280 4.05563 4.14052 4.15939 4.26332 4.33440 4.50316 4.57173 4.71759 4.76374 4.82458 4.91038 4.91288 4.91513 5.12137 5.13271 5.21584 5.31570 5.38400 5.50130 6.00904 6.13831 6.22875 6.49905 6.74573 6.88696 7.12478 8.69441 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.005225 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.100136 B = 5357.592923 C = 6386.158082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.328 6.328 4 C 0.076 3.924 5 C 0.011 3.989 6 N -0.466 5.466 7 C 0.072 3.928 8 C -0.084 4.084 9 C 0.059 3.941 10 N -0.469 5.469 11 C 0.032 3.968 12 C 0.181 3.819 13 O -0.557 6.557 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.028 3.972 17 N -0.927 5.927 18 Si 0.916 3.084 19 H -0.253 1.253 20 H -0.242 1.242 21 H -0.283 1.283 22 C -0.015 4.015 23 C -0.120 4.120 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.349 0.651 36 H 0.272 0.728 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -18.491 8.116 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.241 6.241 4 C 0.029 3.971 5 C -0.147 4.147 6 N -0.175 5.175 7 C -0.086 4.086 8 C -0.086 4.086 9 C -0.069 4.069 10 N -0.191 5.191 11 C -0.096 4.096 12 C 0.141 3.859 13 O -0.368 6.368 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.173 4.173 17 N -0.565 5.565 18 Si 0.741 3.259 19 H -0.179 1.179 20 H -0.166 1.166 21 H -0.210 1.210 22 C -0.144 4.144 23 C -0.147 4.147 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.199 0.801 30 H 0.192 0.808 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.201 0.799 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.408 -19.559 8.150 21.193 hybrid contribution -2.016 1.358 -0.651 2.517 sum -2.425 -18.201 7.499 19.834 Atomic orbital electron populations 1.21817 0.91423 1.04388 1.03075 1.23186 0.97100 0.80288 1.02813 1.86099 1.17702 1.31978 1.88366 1.20037 0.84232 0.94904 0.97948 1.23237 0.89130 0.99045 1.03296 1.67581 1.12855 1.26500 1.10559 1.22791 1.01334 0.86297 0.98157 1.20631 0.92651 0.97230 0.98120 1.21642 1.01718 0.91742 0.91803 1.68615 1.18527 1.18341 1.13647 1.23998 1.00638 0.88389 0.96608 1.20675 0.91501 0.91357 0.82413 1.86456 1.39953 1.94259 1.16126 1.21609 1.20406 1.05968 1.10323 0.92827 1.25769 0.94572 0.96695 1.00259 1.70003 1.24753 1.26772 1.34973 0.86374 0.78156 0.80895 0.80451 1.17853 1.16619 1.21010 1.24764 0.92848 0.98001 0.98809 1.21041 0.95110 0.96111 1.02426 0.91803 0.92354 0.87635 0.90830 0.90141 0.80100 0.80812 0.86896 0.92665 0.88896 0.89680 0.79936 0.91887 0.91058 0.91866 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.04 0.63 5.47 71.98 0.39 1.03 16 3 O -0.33 -8.20 10.15 -92.49 -0.94 -9.14 16 4 C 0.08 2.06 6.71 22.60 0.15 2.22 16 5 C 0.01 0.27 10.22 84.82 0.87 1.14 16 6 N -0.47 -12.83 10.35 -195.45 -2.02 -14.86 16 7 C 0.07 1.95 10.85 84.68 0.92 2.87 16 8 C -0.08 -2.41 5.13 -19.79 -0.10 -2.51 16 9 C 0.06 1.70 4.99 85.56 0.43 2.13 16 10 N -0.47 -17.04 6.25 -915.39 -5.72 -22.77 16 11 C 0.03 1.24 7.36 86.41 0.64 1.88 16 12 C 0.18 8.49 1.05 -10.89 -0.01 8.48 16 13 O -0.56 -26.90 13.32 -148.98 -1.98 -28.88 16 14 C -0.55 -30.00 9.20 25.60 0.24 -29.77 16 15 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 16 C 0.03 1.53 5.47 84.66 0.46 2.00 16 17 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 18 Si 0.92 41.52 24.34 68.60 1.67 43.19 16 19 H -0.25 -10.84 7.06 99.48 0.70 -10.14 16 20 H -0.24 -10.40 5.28 99.48 0.52 -9.88 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C -0.01 -0.61 5.56 86.41 0.48 -0.13 16 23 C -0.12 -3.56 9.10 22.56 0.21 -3.35 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.00 7.68 -2.39 -0.02 0.99 16 28 H 0.08 0.97 7.68 -2.39 -0.02 0.96 16 29 H 0.18 3.20 6.32 -2.91 -0.02 3.18 16 30 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.11 2.64 8.09 -2.38 -0.02 2.63 16 32 H 0.06 1.59 7.64 -2.39 -0.02 1.57 16 33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.09 3.12 7.75 -2.38 -0.02 3.10 16 35 H 0.35 16.14 3.31 -74.06 -0.25 15.90 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.07 2.96 7.14 -2.39 -0.02 2.95 16 38 H 0.06 2.74 6.98 -2.38 -0.02 2.72 16 39 H 0.13 4.06 7.54 -2.91 -0.02 4.04 16 Total: -1.00 -66.57 316.34 -2.67 -69.24 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.63 Total: 33.30 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.41 Total: -15.18 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -7.45 Total: -92.53 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -2.92 Total: -38.02 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.67 Total: 43.19 kcal Total: -66.57 -2.67 -69.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118757483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.233 kcal (2) G-P(sol) polarization free energy of solvation -66.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds