Wall clock time and date at job start Mon Mar 30 2020 23:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47028 * 2 1 4 4 N 1.28442 * 125.19883 * 269.99870 * 3 2 1 5 5 C 1.30878 * 110.94788 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.06027 * 180.02562 * 5 4 3 7 7 C 1.39642 * 107.87684 * 359.75784 * 5 4 3 8 8 C 1.36658 * 125.19858 * 90.00167 * 3 2 1 9 9 C 1.47012 * 126.88749 * 359.97139 * 8 3 2 10 10 O 1.21552 * 119.99164 * 179.97438 * 9 8 3 11 11 O 1.34810 * 120.00325 * 0.02562 * 9 8 3 12 12 C 1.45200 * 117.00128 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46620 * 29.99862 * 12 11 9 14 14 C 1.50701 * 109.47024 * 149.99426 * 12 11 9 15 15 H 1.07999 * 120.00531 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99645 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99763 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99682 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46619 * 120.00442 * 18 16 14 21 21 H 1.48496 * 109.47411 * 240.00046 * 18 16 14 22 22 C 1.52996 * 109.47367 * 270.00002 * 12 11 9 23 23 C 1.53002 * 117.49888 * 356.25163 * 22 12 11 24 24 C 1.53000 * 117.50107 * 64.90925 * 22 12 11 25 25 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46857 * 300.00532 * 1 2 3 27 27 H 1.08996 * 109.46897 * 59.99712 * 1 2 3 28 28 H 1.08996 * 109.47043 * 240.00157 * 2 1 3 29 29 H 1.08998 * 109.46889 * 119.99748 * 2 1 3 30 30 H 1.09005 * 109.47295 * 89.97528 * 6 5 4 31 31 H 1.09003 * 109.47035 * 209.97074 * 6 5 4 32 32 H 1.09000 * 109.47447 * 329.97303 * 6 5 4 33 33 H 1.07997 * 127.32030 * 180.26920 * 7 5 4 34 34 H 0.97007 * 119.99127 * 179.97438 * 17 16 14 35 35 H 1.09002 * 115.54951 * 210.58137 * 22 12 11 36 36 H 1.09000 * 117.49996 * 215.00804 * 23 22 12 37 37 H 1.08999 * 117.49664 * 0.02562 * 23 22 12 38 38 H 1.09008 * 117.49673 * 359.97438 * 24 22 12 39 39 H 1.08999 * 117.49959 * 144.99502 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2651 2.0792 -1.0496 5 6 2.6885 3.2750 -0.7274 6 6 3.0747 4.3684 -1.6898 7 6 2.7129 3.3600 0.6662 8 6 2.2809 2.1238 1.1167 9 6 2.1297 1.6977 2.5156 10 8 2.4018 2.4657 3.4175 11 8 1.6902 0.4549 2.7979 12 6 1.5657 0.1026 4.2010 13 1 1.3369 0.9966 4.7811 14 6 0.4563 -0.9033 4.3698 15 1 -0.0993 -1.2442 3.5087 16 6 0.1514 -1.3894 5.6236 17 7 0.8283 -0.9747 6.6721 18 14 -1.2232 -2.6368 5.8327 19 1 -1.8243 -2.9377 4.5086 20 1 -0.6738 -3.8845 6.4217 21 1 -2.2637 -2.0803 6.7343 22 6 2.8819 -0.5021 4.6938 23 6 3.9962 -0.7028 3.6647 24 6 4.1130 0.4061 4.7134 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1989 4.9746 -1.9215 31 1 3.8418 4.9966 -1.2370 32 1 3.4626 3.9251 -2.6068 33 1 3.0076 4.2088 1.2653 34 1 0.6135 -1.3164 7.5542 35 1 2.7906 -1.2432 5.4878 36 1 4.6379 -1.5761 3.7816 37 1 3.7917 -0.4037 2.6367 38 1 3.9854 1.4344 4.3747 39 1 4.8316 0.2625 5.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123463473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:58 Heat of formation + Delta-G solvation = 9.571223 kcal Electronic energy + Delta-G solvation = -22441.778816 eV Core-core repulsion = 19159.149603 eV Total energy + Delta-G solvation = -3282.629213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.39859 -39.61561 -36.55237 -35.12613 -34.49494 -32.89333 -31.25953 -30.80164 -28.07679 -27.31775 -24.33572 -23.24492 -22.56511 -21.53264 -20.90796 -19.83006 -18.90876 -17.43231 -16.79052 -16.20987 -16.05594 -15.36292 -15.19124 -14.62961 -14.40131 -13.92590 -13.56699 -13.21657 -13.06314 -12.92864 -12.57119 -12.37096 -12.13927 -11.86078 -11.79705 -11.50593 -11.21852 -11.05978 -11.03216 -10.69546 -10.58270 -10.37723 -10.14199 -9.96123 -9.57767 -9.24602 -8.95878 -8.74330 -8.62838 -8.53773 -6.27199 -4.35187 1.39900 2.59549 2.64720 3.17681 3.23286 3.27525 3.40423 3.42897 4.24870 4.51868 4.84294 5.00749 5.05428 5.11938 5.12792 5.16359 5.41801 5.61483 5.62727 5.75260 5.77551 5.79704 5.83341 5.96999 6.04081 6.07186 6.07278 6.27505 6.36455 6.58158 6.63414 6.72172 6.92503 6.93840 7.08410 7.43409 7.48286 7.70812 7.99761 8.16423 8.45054 8.74672 9.29594 10.79933 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.005609 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.303145 B = 4990.698567 C = 5668.325995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.257 5.257 4 N -0.275 5.275 5 C 0.011 3.989 6 C -0.062 4.062 7 C -0.162 4.162 8 C -0.012 4.012 9 C 0.527 3.473 10 O -0.496 6.496 11 O -0.349 6.349 12 C 0.249 3.751 13 H 0.054 0.946 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.114 4.114 23 C -0.196 4.196 24 C -0.207 4.207 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.267 0.733 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 3.785 -12.432 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.047 5.047 4 N -0.111 5.111 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.191 4.191 8 C -0.138 4.138 9 C 0.369 3.631 10 O -0.384 6.384 11 O -0.265 6.265 12 C 0.197 3.803 13 H 0.072 0.928 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.519 5.519 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.133 4.133 23 C -0.233 4.233 24 C -0.243 4.243 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.671 3.101 -12.777 13.417 hybrid contribution -0.382 -0.208 1.166 1.244 sum 2.289 2.893 -11.611 12.183 Atomic orbital electron populations 1.22086 0.93195 1.03789 1.03040 1.22272 0.96532 0.76120 1.05931 1.46013 1.44379 1.12478 1.01844 1.73027 1.18297 1.05590 1.14148 1.21944 1.05158 0.93830 0.93516 1.20036 1.01463 0.93885 0.96688 1.21990 1.05943 0.96773 0.94351 1.21037 1.11619 0.94079 0.87076 1.19652 0.74861 0.82048 0.86550 1.90813 1.46831 1.54368 1.46381 1.86569 1.75325 1.28745 1.35853 1.20249 0.92463 0.96163 0.71444 0.92802 1.20932 1.15853 1.24896 0.94055 0.91058 1.24900 0.96878 0.96728 0.95253 1.70003 1.39880 1.42908 0.99083 0.86266 0.81217 0.80515 0.78433 1.19450 1.20703 1.20727 1.23029 0.88719 1.01512 1.00015 1.22797 1.04815 1.00297 0.95438 1.23151 1.03402 0.96519 1.01272 0.89870 0.91013 0.92333 0.88533 0.86055 0.91039 0.90668 0.91164 0.82021 0.92357 0.85352 0.90262 0.90349 0.88688 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.56 6.50 -4.04 -0.03 1.53 16 3 N -0.26 -4.19 3.35 -57.16 -0.19 -4.38 16 4 N -0.28 -4.33 11.90 33.63 0.40 -3.93 16 5 C 0.01 0.16 7.22 -82.48 -0.60 -0.43 16 6 C -0.06 -0.61 10.45 36.00 0.38 -0.23 16 7 C -0.16 -2.58 10.78 -38.97 -0.42 -3.00 16 8 C -0.01 -0.22 6.96 -82.07 -0.57 -0.79 16 9 C 0.53 11.04 6.78 34.29 0.23 11.27 16 10 O -0.50 -11.49 13.91 -19.30 -0.27 -11.76 16 11 O -0.35 -7.60 5.95 -40.79 -0.24 -7.84 16 12 C 0.25 6.22 2.39 -27.88 -0.07 6.16 16 13 H 0.05 1.53 7.16 -51.93 -0.37 1.15 16 14 C -0.52 -13.53 8.90 -34.44 -0.31 -13.84 16 15 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 16 C 0.07 1.71 5.16 -17.82 -0.09 1.62 16 17 N -0.88 -23.95 11.66 55.43 0.65 -23.30 16 18 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.11 -2.70 5.23 -90.62 -0.47 -3.18 16 23 C -0.20 -4.00 9.74 -26.69 -0.26 -4.26 16 24 C -0.21 -4.44 9.87 -26.70 -0.26 -4.70 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.12 1.87 6.15 -51.93 -0.32 1.55 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.13 3.32 6.54 -51.93 -0.34 2.98 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.57 6.67 -51.93 -0.35 1.22 16 38 H 0.09 2.14 5.55 -51.92 -0.29 1.85 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -29.08 327.38 -7.27 -36.35 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.44 Total: 6.50 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.09 Total: -11.64 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.86 Total: -31.61 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.51 Total: -19.59 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.08 -7.27 -36.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.920 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds