Wall clock time and date at job start Mon Mar 30 2020 23:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47028 * 2 1 4 4 N 1.28442 * 125.19883 * 269.99870 * 3 2 1 5 5 C 1.30878 * 110.94788 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.06027 * 180.02562 * 5 4 3 7 7 C 1.39642 * 107.87684 * 359.75784 * 5 4 3 8 8 C 1.36658 * 125.19858 * 90.00167 * 3 2 1 9 9 C 1.47012 * 126.88749 * 359.97139 * 8 3 2 10 10 O 1.21552 * 119.99164 * 179.97438 * 9 8 3 11 11 O 1.34810 * 120.00325 * 0.02562 * 9 8 3 12 12 C 1.45200 * 117.00128 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46620 * 29.99862 * 12 11 9 14 14 C 1.50701 * 109.47024 * 149.99426 * 12 11 9 15 15 H 1.07999 * 120.00531 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99645 * 179.97438 * 14 12 11 17 17 N 1.31511 * 119.99763 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99682 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47274 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46619 * 120.00442 * 18 16 14 21 21 H 1.48496 * 109.47411 * 240.00046 * 18 16 14 22 22 C 1.52996 * 109.47367 * 270.00002 * 12 11 9 23 23 C 1.53002 * 117.49888 * 356.25163 * 22 12 11 24 24 C 1.53000 * 117.50107 * 64.90925 * 22 12 11 25 25 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46857 * 300.00532 * 1 2 3 27 27 H 1.08996 * 109.46897 * 59.99712 * 1 2 3 28 28 H 1.08996 * 109.47043 * 240.00157 * 2 1 3 29 29 H 1.08998 * 109.46889 * 119.99748 * 2 1 3 30 30 H 1.09005 * 109.47295 * 89.97528 * 6 5 4 31 31 H 1.09003 * 109.47035 * 209.97074 * 6 5 4 32 32 H 1.09000 * 109.47447 * 329.97303 * 6 5 4 33 33 H 1.07997 * 127.32030 * 180.26920 * 7 5 4 34 34 H 0.97007 * 119.99127 * 179.97438 * 17 16 14 35 35 H 1.09002 * 115.54951 * 210.58137 * 22 12 11 36 36 H 1.09000 * 117.49996 * 215.00804 * 23 22 12 37 37 H 1.08999 * 117.49664 * 0.02562 * 23 22 12 38 38 H 1.09008 * 117.49673 * 359.97438 * 24 22 12 39 39 H 1.08999 * 117.49959 * 144.99502 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2651 2.0792 -1.0496 5 6 2.6885 3.2750 -0.7274 6 6 3.0747 4.3684 -1.6898 7 6 2.7129 3.3600 0.6662 8 6 2.2809 2.1238 1.1167 9 6 2.1297 1.6977 2.5156 10 8 2.4018 2.4657 3.4175 11 8 1.6902 0.4549 2.7979 12 6 1.5657 0.1026 4.2010 13 1 1.3369 0.9966 4.7811 14 6 0.4563 -0.9033 4.3698 15 1 -0.0993 -1.2442 3.5087 16 6 0.1514 -1.3894 5.6236 17 7 0.8283 -0.9747 6.6721 18 14 -1.2232 -2.6368 5.8327 19 1 -1.8243 -2.9377 4.5086 20 1 -0.6738 -3.8845 6.4217 21 1 -2.2637 -2.0803 6.7343 22 6 2.8819 -0.5021 4.6938 23 6 3.9962 -0.7028 3.6647 24 6 4.1130 0.4061 4.7134 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1989 4.9746 -1.9215 31 1 3.8418 4.9966 -1.2370 32 1 3.4626 3.9251 -2.6068 33 1 3.0076 4.2088 1.2653 34 1 0.6135 -1.3164 7.5542 35 1 2.7906 -1.2432 5.4878 36 1 4.6379 -1.5761 3.7816 37 1 3.7917 -0.4037 2.6367 38 1 3.9854 1.4344 4.3747 39 1 4.8316 0.2625 5.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463473.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:57 Heat of formation + Delta-G solvation = -5.505198 kcal Electronic energy + Delta-G solvation = -22442.432579 eV Core-core repulsion = 19159.149603 eV Total energy + Delta-G solvation = -3283.282976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.64673 -41.34597 -38.33030 -36.72364 -35.79186 -34.87412 -32.34869 -32.08040 -29.96442 -28.36015 -26.00950 -24.83944 -23.89384 -23.24555 -22.17229 -21.50192 -20.56023 -18.97171 -18.51313 -17.81619 -17.71008 -16.91830 -16.65089 -16.32124 -15.64941 -15.59047 -14.85415 -14.58099 -14.36058 -14.13876 -13.95472 -13.73470 -13.35890 -13.24423 -13.13092 -13.04265 -12.87778 -12.82931 -12.41767 -12.30272 -12.13606 -11.98033 -11.87664 -11.57169 -11.38950 -11.10739 -10.51252 -10.47576 -10.28166 -9.89152 -8.26682 -6.42695 -0.03302 1.36228 1.42923 1.43850 1.46133 1.55959 1.78219 1.88699 2.39876 3.01664 3.11297 3.36553 3.64304 3.98512 4.01907 4.02704 4.10186 4.22024 4.24234 4.30154 4.38455 4.64422 4.68901 4.73541 4.78252 4.88805 4.92230 4.92948 5.02325 5.13428 5.16660 5.19673 5.25098 5.46394 5.49549 5.54839 5.73932 5.77533 6.03913 6.57467 6.79079 7.00010 7.26874 8.81066 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022176 B = 0.005609 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.303145 B = 4990.698567 C = 5668.325995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.106 3.894 3 N -0.258 5.258 4 N -0.277 5.277 5 C 0.016 3.984 6 C -0.061 4.061 7 C -0.159 4.159 8 C -0.044 4.044 9 C 0.526 3.474 10 O -0.527 6.527 11 O -0.342 6.342 12 C 0.256 3.744 13 H 0.008 0.992 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.021 3.979 17 N -0.912 5.912 18 Si 0.976 3.024 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.281 1.281 22 C -0.139 4.139 23 C -0.167 4.167 24 C -0.202 4.202 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.174 0.826 34 H 0.269 0.731 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 3.369 -14.647 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.048 5.048 4 N -0.113 5.113 5 C -0.139 4.139 6 C -0.119 4.119 7 C -0.188 4.188 8 C -0.169 4.169 9 C 0.371 3.629 10 O -0.416 6.416 11 O -0.258 6.258 12 C 0.203 3.797 13 H 0.025 0.975 14 C -0.575 4.575 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.800 3.200 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.207 1.207 22 C -0.158 4.158 23 C -0.204 4.204 24 C -0.239 4.239 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.192 0.808 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.968 2.684 -15.018 15.542 hybrid contribution -0.449 0.018 1.786 1.841 sum 2.519 2.702 -13.232 13.738 Atomic orbital electron populations 1.22037 0.92721 1.04711 1.01925 1.22426 0.96903 0.75443 1.06512 1.46201 1.44297 1.12993 1.01304 1.73060 1.18274 1.06208 1.13736 1.22653 1.03568 0.94192 0.93502 1.20238 1.02764 0.92807 0.96136 1.22336 1.04740 0.96232 0.95469 1.20851 1.14451 0.95607 0.85995 1.20109 0.73826 0.81249 0.87749 1.90788 1.48301 1.54865 1.47677 1.86573 1.75671 1.29590 1.33933 1.19857 0.93342 0.94088 0.72412 0.97471 1.21214 1.16545 1.25268 0.94511 0.90855 1.25749 0.99055 0.98391 0.94750 1.70130 1.41296 1.44019 0.99526 0.85234 0.78106 0.78033 0.78661 1.18359 1.20003 1.20653 1.22736 0.89212 1.02470 1.01405 1.22852 1.02388 1.00405 0.94756 1.23137 1.02334 0.96052 1.02370 0.87966 0.94114 0.91275 0.85551 0.87765 0.89477 0.88693 0.90003 0.80837 0.92223 0.87635 0.87605 0.89996 0.89933 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.11 2.86 6.50 86.38 0.56 3.42 16 3 N -0.26 -8.13 3.35 -334.74 -1.12 -9.25 16 4 N -0.28 -8.14 11.90 -47.51 -0.57 -8.70 16 5 C 0.02 0.43 7.22 43.04 0.31 0.74 16 6 C -0.06 -0.98 10.45 71.23 0.74 -0.24 16 7 C -0.16 -4.87 10.78 22.67 0.24 -4.63 16 8 C -0.04 -1.58 6.96 40.75 0.28 -1.29 16 9 C 0.53 22.79 6.78 70.12 0.48 23.27 16 10 O -0.53 -25.49 13.91 19.67 0.27 -25.22 16 11 O -0.34 -15.42 5.95 -57.22 -0.34 -15.76 16 12 C 0.26 13.37 2.39 29.85 0.07 13.44 16 13 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 14 C -0.54 -28.81 8.90 25.60 0.23 -28.59 16 15 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 16 C 0.02 1.11 5.16 84.66 0.44 1.54 16 17 N -0.91 -51.02 11.66 21.45 0.25 -50.77 16 18 Si 0.98 41.36 29.54 68.60 2.03 43.38 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 22 C -0.14 -6.78 5.23 -10.79 -0.06 -6.84 16 23 C -0.17 -6.68 9.74 30.62 0.30 -6.38 16 24 C -0.20 -8.75 9.87 30.62 0.30 -8.45 16 25 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 3.19 6.15 -2.39 -0.01 3.18 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 34 H 0.27 14.13 8.31 -92.70 -0.77 13.35 16 35 H 0.11 5.64 6.54 -2.39 -0.02 5.62 16 36 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.08 3.21 6.67 -2.39 -0.02 3.20 16 38 H 0.08 3.81 5.55 -2.38 -0.01 3.79 16 39 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -64.69 327.38 6.21 -58.48 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 1.05 Total: 25.13 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 4.64 Total: -17.29 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.44 Total: -68.72 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.07 Total: -40.98 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -64.69 6.21 -58.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463473.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.971 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds