Wall clock time and date at job start Tue Mar 31 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.50697 * 109.47095 * 293.94952 * 3 2 1 5 5 H 1.07998 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99832 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47156 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47068 * 210.00655 * 8 6 4 11 11 H 1.48505 * 109.46908 * 330.00217 * 8 6 4 12 12 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 13 13 C 1.50699 * 109.47144 * 66.05037 * 12 2 1 14 14 C 1.38268 * 119.94067 * 269.71790 * 13 12 2 15 15 C 1.38144 * 120.05643 * 179.72254 * 14 13 12 16 16 C 1.38738 * 119.94185 * 0.58144 * 15 14 13 17 17 O 1.35902 * 120.05428 * 179.68390 * 16 15 14 18 18 C 1.42895 * 117.00124 * 0.02562 * 17 16 15 19 19 C 1.50702 * 109.47112 * 180.02562 * 18 17 16 20 20 N 1.34776 * 120.00173 * 180.02562 * 19 18 17 21 21 O 1.21275 * 119.99838 * 0.02562 * 19 18 17 22 22 C 1.38732 * 119.88594 * 359.69245 * 16 15 14 23 23 C 1.38144 * 119.94700 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 27 27 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 28 28 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 29 29 H 0.96997 * 120.00039 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46557 * 186.04354 * 12 2 1 31 31 H 1.08994 * 109.47575 * 306.04356 * 12 2 1 32 32 H 1.08003 * 119.96932 * 359.97438 * 14 13 12 33 33 H 1.07996 * 120.03169 * 180.25441 * 15 14 13 34 34 H 1.08998 * 109.47189 * 300.00934 * 18 17 16 35 35 H 1.08995 * 109.47099 * 60.00682 * 18 17 16 36 36 H 0.97008 * 119.99554 * 359.97438 * 20 19 18 37 37 H 0.96997 * 120.00007 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.02202 * 179.97438 * 22 16 15 39 39 H 1.08001 * 119.96861 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5820 4.1872 -3.1377 9 1 0.2695 4.8672 -2.9954 10 1 2.6241 5.1886 -3.4790 11 1 1.4987 3.1716 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9728 14 6 0.4532 -2.7034 1.4995 15 6 0.1195 -4.0350 1.3449 16 6 0.9790 -4.8905 0.6709 17 8 0.6560 -6.2023 0.5231 18 6 -0.5848 -6.6324 1.0864 19 6 -0.7710 -8.1050 0.8261 20 7 -1.8785 -8.7328 1.2686 21 8 0.0757 -8.7252 0.2184 22 6 2.1687 -4.4046 0.1483 23 6 2.4951 -3.0709 0.3006 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9858 4.9182 -0.7766 30 1 3.0797 -0.6611 1.1756 31 1 1.5611 -0.3873 2.0628 32 1 -0.2129 -2.0381 2.0287 33 1 -0.8070 -4.4109 1.7529 34 1 -0.5778 -6.4517 2.1613 35 1 -1.4033 -6.0761 0.6299 36 1 -2.5556 -8.2368 1.7550 37 1 -1.9985 -9.6806 1.1007 38 1 2.8396 -5.0688 -0.3764 39 1 3.4214 -2.6924 -0.1057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138867936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:58 Heat of formation + Delta-G solvation = -44.314792 kcal Electronic energy + Delta-G solvation = -20592.229018 eV Core-core repulsion = 17307.263131 eV Total energy + Delta-G solvation = -3284.965886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.52569 -39.44396 -37.83389 -35.92647 -34.18259 -32.62570 -31.06844 -30.67183 -28.71507 -27.05351 -26.27415 -23.68070 -22.88221 -21.47584 -20.91385 -20.05957 -18.50188 -18.01421 -16.73947 -16.61879 -16.39990 -15.76274 -15.23636 -14.85211 -14.55529 -14.44391 -14.19754 -14.07673 -13.70618 -13.27301 -13.02234 -12.61966 -12.50722 -11.92001 -11.53503 -11.26850 -11.22394 -10.99306 -10.87021 -10.69287 -10.62386 -10.40723 -10.32519 -10.20655 -9.84195 -9.21417 -8.85283 -8.43868 -8.01877 -7.22120 -6.02156 -4.03305 1.47083 1.53398 2.13556 2.41501 3.32362 3.38627 3.43540 3.53937 3.86553 4.31664 4.44411 4.57789 4.65593 4.88404 4.92286 5.13398 5.27587 5.34770 5.45767 5.55067 5.71166 5.90726 6.09007 6.17910 6.24004 6.26559 6.35392 6.35617 6.45976 6.71842 6.75359 6.87624 6.91152 7.28552 7.33351 7.35709 7.76258 7.80740 8.08454 8.20429 8.55138 9.04489 9.60885 11.08704 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.002793 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.869475 B =10022.071048 C =10162.794629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.535 5.535 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.092 3.908 13 C -0.092 4.092 14 C -0.076 4.076 15 C -0.211 4.211 16 C 0.113 3.887 17 O -0.294 6.294 18 C 0.041 3.959 19 C 0.520 3.480 20 N -0.852 5.852 21 O -0.518 6.518 22 C -0.146 4.146 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.010 0.990 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.408 0.592 38 H 0.129 0.871 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -20.839 7.853 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.259 5.259 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.037 4.037 13 C -0.093 4.093 14 C -0.095 4.095 15 C -0.230 4.230 16 C 0.068 3.932 17 O -0.207 6.207 18 C -0.038 4.038 19 C 0.303 3.697 20 N -0.419 5.419 21 O -0.392 6.392 22 C -0.165 4.165 23 C -0.077 4.077 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.009 0.991 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.231 0.769 37 H 0.239 0.761 38 H 0.147 0.853 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.552 -21.253 6.933 23.935 hybrid contribution -1.207 0.968 0.263 1.570 sum -9.759 -20.285 7.196 23.633 Atomic orbital electron populations 1.22266 0.89012 0.99366 1.00634 1.62148 1.07018 1.17583 1.39162 1.19760 0.95427 0.81399 0.96674 1.21160 1.34722 0.96866 1.01699 0.91857 1.24989 0.95314 0.97363 0.97003 1.69954 1.38432 1.11408 1.34124 0.86500 0.77956 0.79223 0.83766 1.20783 1.21252 1.19745 1.21007 1.00463 0.89044 0.93139 1.19929 0.94696 0.96155 0.98545 1.20854 0.96079 0.94207 0.98322 1.21079 1.00793 0.94938 1.06180 1.18948 0.94969 0.81940 0.97300 1.86125 1.36695 1.23417 1.74430 1.22369 0.88212 0.92993 1.00269 1.20142 0.81825 0.88972 0.78765 1.43663 1.22782 1.14417 1.61037 1.90813 1.42002 1.67351 1.39016 1.20410 0.95913 0.96059 1.04089 1.20915 0.99596 0.91452 0.95784 0.90968 0.93346 0.97157 0.99126 0.95153 0.92940 0.90472 0.95142 0.86050 0.86019 0.88963 0.88872 0.76850 0.76054 0.85285 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.02 60.07 0.54 1.24 16 2 N -0.53 -11.56 4.74 -245.83 -1.17 -12.73 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 4 C -0.51 -14.25 8.52 -34.44 -0.29 -14.55 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.09 1.63 5.12 -4.98 -0.03 1.61 16 13 C -0.09 -1.43 4.88 -104.60 -0.51 -1.94 16 14 C -0.08 -1.02 7.91 -39.61 -0.31 -1.34 16 15 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 16 C 0.11 1.50 6.69 -39.21 -0.26 1.24 16 17 O -0.29 -3.81 9.67 -39.34 -0.38 -4.19 16 18 C 0.04 0.33 5.22 36.01 0.19 0.52 16 19 C 0.52 4.72 8.18 -10.98 -0.09 4.63 16 20 N -0.85 -3.49 8.87 31.22 0.28 -3.22 16 21 O -0.52 -7.51 17.34 -14.35 -0.25 -7.76 16 22 C -0.15 -2.04 9.99 -39.43 -0.39 -2.43 16 23 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 24 H 0.07 1.52 6.86 -51.93 -0.36 1.16 16 25 H 0.05 0.83 5.91 -51.93 -0.31 0.52 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 31 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 32 H 0.12 1.49 8.00 -52.48 -0.42 1.07 16 33 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 34 H 0.09 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.09 0.56 7.66 -51.93 -0.40 0.16 16 36 H 0.40 0.27 8.83 -40.82 -0.36 -0.09 16 37 H 0.41 1.35 8.93 -40.82 -0.36 0.98 16 38 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -35.31 330.99 -8.21 -43.52 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.37 Total: -2.62 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.02 Total: -8.69 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.15 Total: -41.94 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.63 Total: -11.95 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.31 -8.21 -43.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138867936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds