Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.50697 * 109.47095 * 293.94952 * 3 2 1 5 5 H 1.07998 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99832 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00231 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00098 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47156 * 90.00079 * 8 6 4 10 10 H 1.48499 * 109.47068 * 210.00655 * 8 6 4 11 11 H 1.48505 * 109.46908 * 330.00217 * 8 6 4 12 12 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 13 13 C 1.50699 * 109.47144 * 66.05037 * 12 2 1 14 14 C 1.38268 * 119.94067 * 269.71790 * 13 12 2 15 15 C 1.38144 * 120.05643 * 179.72254 * 14 13 12 16 16 C 1.38738 * 119.94185 * 0.58144 * 15 14 13 17 17 O 1.35902 * 120.05428 * 179.68390 * 16 15 14 18 18 C 1.42895 * 117.00124 * 0.02562 * 17 16 15 19 19 C 1.50702 * 109.47112 * 180.02562 * 18 17 16 20 20 N 1.34776 * 120.00173 * 180.02562 * 19 18 17 21 21 O 1.21275 * 119.99838 * 0.02562 * 19 18 17 22 22 C 1.38732 * 119.88594 * 359.69245 * 16 15 14 23 23 C 1.38144 * 119.94700 * 0.02562 * 22 16 15 24 24 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 25 25 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 27 27 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 28 28 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 29 29 H 0.96997 * 120.00039 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46557 * 186.04354 * 12 2 1 31 31 H 1.08994 * 109.47575 * 306.04356 * 12 2 1 32 32 H 1.08003 * 119.96932 * 359.97438 * 14 13 12 33 33 H 1.07996 * 120.03169 * 180.25441 * 15 14 13 34 34 H 1.08998 * 109.47189 * 300.00934 * 18 17 16 35 35 H 1.08995 * 109.47099 * 60.00682 * 18 17 16 36 36 H 0.97008 * 119.99554 * 359.97438 * 20 19 18 37 37 H 0.96997 * 120.00007 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.02202 * 179.97438 * 22 16 15 39 39 H 1.08001 * 119.96861 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0269 3.3494 -1.5285 7 7 2.7119 4.0018 -0.6150 8 14 1.5820 4.1872 -3.1377 9 1 0.2695 4.8672 -2.9954 10 1 2.6241 5.1886 -3.4790 11 1 1.4987 3.1716 -4.2180 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2204 0.9728 14 6 0.4532 -2.7034 1.4995 15 6 0.1195 -4.0350 1.3449 16 6 0.9790 -4.8905 0.6709 17 8 0.6560 -6.2023 0.5231 18 6 -0.5848 -6.6324 1.0864 19 6 -0.7710 -8.1050 0.8261 20 7 -1.8785 -8.7328 1.2686 21 8 0.0757 -8.7252 0.2184 22 6 2.1687 -4.4046 0.1483 23 6 2.4951 -3.0709 0.3006 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9858 4.9182 -0.7766 30 1 3.0797 -0.6611 1.1756 31 1 1.5611 -0.3873 2.0628 32 1 -0.2129 -2.0381 2.0287 33 1 -0.8070 -4.4109 1.7529 34 1 -0.5778 -6.4517 2.1613 35 1 -1.4033 -6.0761 0.6299 36 1 -2.5556 -8.2368 1.7550 37 1 -1.9985 -9.6806 1.1007 38 1 2.8396 -5.0688 -0.3764 39 1 3.4214 -2.6924 -0.1057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138867936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = -70.958335 kcal Electronic energy + Delta-G solvation = -20593.384368 eV Core-core repulsion = 17307.263131 eV Total energy + Delta-G solvation = -3286.121237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40219 -40.31248 -38.99168 -37.40477 -34.78528 -34.68884 -32.14886 -31.86484 -29.62505 -28.89372 -27.69985 -25.39644 -23.86464 -22.80703 -21.91162 -21.37703 -19.35451 -18.60704 -18.51727 -17.41018 -17.32961 -16.88452 -16.68677 -16.31230 -16.02698 -15.68173 -15.32745 -15.22804 -14.84463 -14.58801 -14.31783 -13.85998 -13.63174 -13.47641 -13.21428 -12.83601 -12.75156 -12.59819 -12.44444 -12.21835 -11.90496 -11.78711 -11.74064 -11.25636 -11.10251 -10.74466 -10.61017 -9.88570 -9.14965 -8.90474 -8.19292 -6.29410 0.44779 0.45599 1.41578 1.43204 1.48779 1.54927 1.74263 2.41145 2.77675 2.88300 3.12995 3.56550 3.77586 3.93320 3.96209 4.04398 4.13588 4.15282 4.32579 4.47128 4.56475 4.59693 4.74735 4.78314 4.83421 5.09042 5.14484 5.18844 5.28554 5.31771 5.41770 5.65783 5.76402 5.78858 5.86382 6.06252 6.31173 6.35666 6.49071 6.64501 6.86884 7.26504 7.40228 8.91432 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036986 B = 0.002793 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.869475 B =10022.071048 C =10162.794629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.545 5.545 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.096 3.904 13 C -0.113 4.113 14 C -0.076 4.076 15 C -0.198 4.198 16 C 0.116 3.884 17 O -0.319 6.319 18 C 0.031 3.969 19 C 0.517 3.483 20 N -0.825 5.825 21 O -0.585 6.585 22 C -0.161 4.161 23 C -0.068 4.068 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.013 0.987 27 H -0.035 1.035 28 H 0.004 0.996 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.423 0.577 37 H 0.414 0.586 38 H 0.131 0.869 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 -21.941 8.128 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.270 5.270 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.032 4.032 13 C -0.114 4.114 14 C -0.094 4.094 15 C -0.217 4.217 16 C 0.071 3.929 17 O -0.233 6.233 18 C -0.047 4.047 19 C 0.301 3.699 20 N -0.392 5.392 21 O -0.464 6.464 22 C -0.179 4.179 23 C -0.087 4.087 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.032 0.968 27 H -0.017 1.017 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.155 0.845 33 H 0.182 0.818 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.256 0.744 37 H 0.247 0.753 38 H 0.149 0.851 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.196 -22.380 7.251 26.053 hybrid contribution -0.482 1.161 0.265 1.285 sum -11.679 -21.218 7.516 25.359 Atomic orbital electron populations 1.22231 0.87583 1.01001 0.99847 1.62045 1.08397 1.15003 1.41505 1.19406 0.93741 0.83703 0.95064 1.21462 1.34792 0.97458 1.02392 0.92050 1.25906 0.95033 0.98067 1.00679 1.70079 1.39356 1.11855 1.36199 0.85389 0.78000 0.78070 0.79200 1.19677 1.20737 1.19095 1.20965 0.99854 0.90423 0.91947 1.19734 0.96380 0.94443 1.00800 1.21037 0.95262 0.95313 0.97814 1.21416 1.01760 0.93752 1.04736 1.19044 0.94711 0.82498 0.96651 1.86103 1.39139 1.23005 1.75009 1.22779 0.87168 0.92419 1.02320 1.20449 0.81986 0.89429 0.78015 1.43473 1.21592 1.14804 1.59311 1.90793 1.44532 1.68683 1.42383 1.20508 0.96940 0.95755 1.04726 1.20902 0.99639 0.91975 0.96193 0.92817 0.90356 0.96823 1.01734 0.97766 0.92679 0.91427 0.94601 0.84516 0.81783 0.85640 0.85932 0.74446 0.75347 0.85065 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.02 127.69 1.15 2.75 16 2 N -0.55 -23.89 4.74 -931.66 -4.42 -28.31 16 3 C 0.21 11.16 4.72 85.56 0.40 11.56 16 4 C -0.52 -29.99 8.52 25.60 0.22 -29.77 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 0.06 5.46 84.65 0.46 0.52 16 7 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 8 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.10 3.45 5.12 85.56 0.44 3.89 16 13 C -0.11 -3.39 4.88 -19.85 -0.10 -3.49 16 14 C -0.08 -1.82 7.91 22.25 0.18 -1.65 16 15 C -0.20 -3.92 9.04 22.37 0.20 -3.72 16 16 C 0.12 2.81 6.69 22.51 0.15 2.96 16 17 O -0.32 -7.60 9.67 -73.41 -0.71 -8.31 16 18 C 0.03 0.39 5.22 71.24 0.37 0.76 16 19 C 0.52 8.26 8.18 87.66 0.72 8.98 16 20 N -0.82 -4.25 8.87 -173.54 -1.54 -5.79 16 21 O -0.58 -16.77 17.34 16.02 0.28 -16.49 16 22 C -0.16 -4.38 9.99 22.37 0.22 -4.16 16 23 C -0.07 -2.02 9.69 22.25 0.22 -1.80 16 24 H 0.05 2.24 6.86 -2.39 -0.02 2.22 16 25 H 0.08 2.51 5.91 -2.39 -0.01 2.50 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H -0.04 -2.03 8.12 -2.39 -0.02 -2.04 16 28 H 0.00 0.25 7.93 -2.39 -0.02 0.23 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 31 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.14 2.86 8.00 -2.91 -0.02 2.84 16 33 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 34 H 0.13 0.76 7.66 -2.39 -0.02 0.74 16 35 H 0.12 0.84 7.66 -2.39 -0.02 0.83 16 36 H 0.42 -1.18 8.83 -92.70 -0.82 -1.99 16 37 H 0.41 1.72 8.93 -92.71 -0.83 0.89 16 38 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -79.21 330.99 -0.02 -79.22 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -0.57 Total: 2.44 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.63 Total: -13.16 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -5.68 Total: -90.34 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.43 Total: -24.80 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.21 -0.02 -79.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138867936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.264 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds