Wall clock time and date at job start Tue Mar 31 2020 00:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35713 * 116.99825 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91220 * 359.72534 * 4 3 2 6 6 C 1.37700 * 120.08866 * 179.72768 * 5 4 3 7 7 C 1.39735 * 119.90695 * 0.56527 * 6 5 4 8 8 C 1.47602 * 120.08496 * 179.68393 * 7 6 5 9 9 O 1.21584 * 120.00051 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99972 * 0.02564 * 8 7 6 11 11 C 1.46506 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47013 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99877 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00002 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00354 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00494 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99425 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47216 * 89.99706 * 18 16 14 20 20 H 1.48504 * 109.47017 * 209.99324 * 18 16 14 21 21 H 1.48496 * 109.47307 * 329.99637 * 18 16 14 22 22 C 1.39733 * 119.82631 * 359.70742 * 7 6 5 23 23 C 1.37699 * 119.91227 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08001 * 119.95341 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.04779 * 180.27730 * 6 5 4 31 31 H 0.96994 * 120.00292 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.46659 * 299.99886 * 11 10 8 33 33 H 1.08998 * 109.47108 * 59.99344 * 11 10 8 34 34 H 1.08999 * 109.47106 * 300.00056 * 12 11 10 35 35 H 1.08998 * 109.47323 * 59.99849 * 12 11 10 36 36 H 0.96995 * 120.00543 * 359.97438 * 13 12 11 37 37 H 0.97001 * 120.00066 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.04496 * 179.97438 * 22 7 6 39 39 H 1.07996 * 119.95600 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0047 6 6 5.5624 0.5979 -0.0015 7 6 6.0983 1.8884 -0.0011 8 6 7.5616 2.0819 -0.0007 9 8 8.0263 3.2054 0.0001 10 7 8.3827 1.0130 -0.0012 11 6 9.8351 1.2051 -0.0002 12 6 10.5297 -0.1581 -0.0004 13 7 11.9821 0.0339 0.0000 14 6 12.8163 -1.0520 -0.0006 15 1 12.4035 -2.0500 -0.0010 16 6 14.1925 -0.8701 -0.0008 17 7 14.9943 -1.9138 -0.0009 18 14 14.9063 0.8561 0.0005 19 1 15.0958 1.3124 1.4009 20 1 16.2159 0.8508 -0.6998 21 1 13.9749 1.7775 -0.6986 22 6 5.2454 2.9952 -0.0006 23 6 3.8808 2.8105 -0.0011 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7816 -0.5753 0.0096 30 1 6.2184 -0.2600 -0.0019 31 1 8.0120 0.1167 -0.0014 32 1 10.1283 1.7628 -0.8895 33 1 10.1274 1.7614 0.8904 34 1 10.2363 -0.7155 0.8892 35 1 10.2375 -0.7148 -0.8907 36 1 12.3528 0.9302 -0.0001 37 1 15.9560 -1.7867 -0.0006 38 1 5.6558 3.9942 0.0001 39 1 3.2210 3.6655 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149594341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:02 Heat of formation + Delta-G solvation = -37.429807 kcal Electronic energy + Delta-G solvation = -20147.024107 eV Core-core repulsion = 16862.356776 eV Total energy + Delta-G solvation = -3284.667331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72155 -39.58619 -37.45313 -35.85518 -34.02499 -32.53406 -31.55673 -31.23770 -30.22605 -27.98685 -24.69126 -23.94234 -23.10927 -21.98076 -21.48154 -20.41755 -18.85355 -18.01256 -17.35715 -16.59481 -16.50863 -15.51887 -15.42997 -15.13697 -14.44247 -14.24249 -14.05864 -14.01301 -13.71447 -13.65472 -13.56125 -13.13983 -12.67469 -12.61519 -12.31740 -12.14648 -11.60381 -11.51883 -11.18310 -11.17063 -10.95387 -10.85562 -10.16920 -9.95692 -9.63378 -9.42524 -9.07902 -8.91992 -8.55234 -7.31649 -5.81119 -3.18588 0.65490 0.99281 2.70113 2.75411 3.16904 3.38121 3.41916 3.45762 3.65005 4.29429 4.41560 4.44254 4.55597 4.56749 4.65168 4.73424 4.86998 4.98905 5.11457 5.27846 5.29082 5.36420 5.43674 5.52407 5.59054 5.61168 5.65019 5.78651 5.89847 5.95999 6.09115 6.30453 6.37552 6.57238 6.61276 6.94723 7.52797 7.92166 8.23157 8.36868 9.14595 9.86934 10.05286 11.36631 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038015 B = 0.002598 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.369460 B =10773.119114 C =11478.437288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.314 6.314 4 C 0.153 3.847 5 C -0.217 4.217 6 C -0.043 4.043 7 C -0.170 4.170 8 C 0.559 3.441 9 O -0.542 6.542 10 N -0.719 5.719 11 C 0.107 3.893 12 C 0.148 3.852 13 N -0.752 5.752 14 C -0.249 4.249 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.020 4.020 23 C -0.162 4.162 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.144 0.856 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.192 4.682 0.004 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.107 3.893 5 C -0.236 4.236 6 C -0.062 4.062 7 C -0.174 4.174 8 C 0.346 3.654 9 O -0.420 6.420 10 N -0.371 5.371 11 C -0.016 4.016 12 C 0.020 3.980 13 N -0.399 5.399 14 C -0.379 4.379 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.579 5.579 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.039 4.039 23 C -0.180 4.180 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.234 0.766 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.162 0.838 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -29.902 5.365 0.004 30.379 hybrid contribution 0.577 0.342 -0.010 0.671 sum -29.325 5.707 -0.006 29.875 Atomic orbital electron populations 1.21786 0.92535 1.03047 1.03618 1.22869 0.96075 0.81638 1.01774 1.86047 1.18981 1.29785 1.87874 1.19263 0.82323 0.94207 0.93536 1.21173 0.94003 0.98352 1.10090 1.21143 0.94720 0.96281 0.94051 1.19892 0.93250 0.94112 1.10103 1.18125 0.86075 0.84705 0.76484 1.90779 1.77465 1.23589 1.50206 1.45805 1.07274 1.09001 1.74993 1.21622 0.78023 0.99365 1.02613 1.20732 0.85132 0.92816 0.99283 1.42527 1.00300 1.05698 1.91344 1.19004 0.87590 0.87491 1.43775 0.89095 1.24681 0.95803 0.96833 1.01653 1.69698 1.03025 1.28086 1.57075 0.86538 0.78694 0.85328 0.77949 1.20895 1.21581 1.20155 1.21100 0.91445 0.99272 0.92037 1.20412 0.95009 0.94951 1.07657 0.91438 0.90193 0.91443 0.91678 0.91681 0.84828 0.85046 0.76561 0.91183 0.91179 0.94882 0.94944 0.80352 0.92932 0.83845 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 10.28 37.16 0.38 -0.23 16 2 C 0.05 0.28 5.45 37.16 0.20 0.48 16 3 O -0.31 -2.69 10.12 -18.84 -0.19 -2.88 16 4 C 0.15 1.42 6.70 -39.02 -0.26 1.15 16 5 C -0.22 -1.81 9.01 -39.50 -0.36 -2.17 16 6 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 7 C -0.17 -1.98 5.87 -104.96 -0.62 -2.60 16 8 C 0.56 8.13 7.76 -12.44 -0.10 8.04 16 9 O -0.54 -9.85 16.34 5.29 0.09 -9.76 16 10 N -0.72 -9.65 5.51 -61.33 -0.34 -9.99 16 11 C 0.11 1.75 5.79 -4.04 -0.02 1.73 16 12 C 0.15 2.76 6.37 -4.05 -0.03 2.73 16 13 N -0.75 -17.91 5.41 -59.91 -0.32 -18.23 16 14 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.18 13.97 55.49 0.78 -28.41 16 18 Si 0.89 22.25 27.74 -169.99 -4.71 17.53 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 22 C -0.02 -0.21 9.58 -39.22 -0.38 -0.59 16 23 C -0.16 -1.53 9.97 -39.50 -0.39 -1.92 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.06 0.30 7.64 -51.93 -0.40 -0.10 16 29 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16 30 H 0.13 0.92 6.39 -52.49 -0.34 0.59 16 31 H 0.40 4.18 6.49 -40.82 -0.27 3.91 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.36 8.52 5.53 -40.82 -0.23 8.30 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.14 1.53 7.64 -52.48 -0.40 1.13 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -34.59 331.18 -7.23 -41.82 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.32 Total: 6.18 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.19 Total: -1.25 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.11 Total: -56.63 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.10 Total: -12.64 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.59 -7.23 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149594341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.387 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds