Wall clock time and date at job start Tue Mar 31 2020 00:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35713 * 116.99825 * 180.02562 * 3 2 1 5 5 C 1.38993 * 119.91220 * 359.72534 * 4 3 2 6 6 C 1.37700 * 120.08866 * 179.72768 * 5 4 3 7 7 C 1.39735 * 119.90695 * 0.56527 * 6 5 4 8 8 C 1.47602 * 120.08496 * 179.68393 * 7 6 5 9 9 O 1.21584 * 120.00051 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99972 * 0.02564 * 8 7 6 11 11 C 1.46506 * 119.99938 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 10 8 13 13 N 1.46497 * 109.47013 * 179.97438 * 12 11 10 14 14 C 1.36936 * 119.99877 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00002 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00354 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00494 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99425 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47216 * 89.99706 * 18 16 14 20 20 H 1.48504 * 109.47017 * 209.99324 * 18 16 14 21 21 H 1.48496 * 109.47307 * 329.99637 * 18 16 14 22 22 C 1.39733 * 119.82631 * 359.70742 * 7 6 5 23 23 C 1.37699 * 119.91227 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 25 25 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08001 * 119.95341 * 359.97438 * 5 4 3 30 30 H 1.08000 * 120.04779 * 180.27730 * 6 5 4 31 31 H 0.96994 * 120.00292 * 359.97438 * 10 8 7 32 32 H 1.08998 * 109.46659 * 299.99886 * 11 10 8 33 33 H 1.08998 * 109.47108 * 59.99344 * 11 10 8 34 34 H 1.08999 * 109.47106 * 300.00056 * 12 11 10 35 35 H 1.08998 * 109.47323 * 59.99849 * 12 11 10 36 36 H 0.96995 * 120.00543 * 359.97438 * 13 12 11 37 37 H 0.97001 * 120.00066 * 180.02562 * 17 16 14 38 38 H 1.08004 * 120.04496 * 179.97438 * 22 7 6 39 39 H 1.07996 * 119.95600 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1967 0.4217 0.0047 6 6 5.5624 0.5979 -0.0015 7 6 6.0983 1.8884 -0.0011 8 6 7.5616 2.0819 -0.0007 9 8 8.0263 3.2054 0.0001 10 7 8.3827 1.0130 -0.0012 11 6 9.8351 1.2051 -0.0002 12 6 10.5297 -0.1581 -0.0004 13 7 11.9821 0.0339 0.0000 14 6 12.8163 -1.0520 -0.0006 15 1 12.4035 -2.0500 -0.0010 16 6 14.1925 -0.8701 -0.0008 17 7 14.9943 -1.9138 -0.0009 18 14 14.9063 0.8561 0.0005 19 1 15.0958 1.3124 1.4009 20 1 16.2159 0.8508 -0.6998 21 1 13.9749 1.7775 -0.6986 22 6 5.2454 2.9952 -0.0006 23 6 3.8808 2.8105 -0.0011 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7816 -0.5753 0.0096 30 1 6.2184 -0.2600 -0.0019 31 1 8.0120 0.1167 -0.0014 32 1 10.1283 1.7628 -0.8895 33 1 10.1274 1.7614 0.8904 34 1 10.2363 -0.7155 0.8892 35 1 10.2375 -0.7148 -0.8907 36 1 12.3528 0.9302 -0.0001 37 1 15.9560 -1.7867 -0.0006 38 1 5.6558 3.9942 0.0001 39 1 3.2210 3.6655 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149594341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:01 Heat of formation + Delta-G solvation = -62.008326 kcal Electronic energy + Delta-G solvation = -20148.089911 eV Core-core repulsion = 16862.356776 eV Total energy + Delta-G solvation = -3285.733135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51064 -40.54051 -38.24504 -37.42155 -35.61075 -33.58504 -32.93683 -31.99615 -31.16567 -29.44307 -25.77130 -24.86924 -24.27298 -23.21621 -22.58352 -21.45799 -19.93760 -19.43879 -18.56503 -17.47003 -17.09295 -16.69677 -16.69006 -16.27392 -15.85173 -15.67799 -15.29503 -15.15370 -14.70275 -14.64064 -14.31349 -14.27941 -13.72955 -13.44111 -13.26550 -13.20480 -12.89993 -12.69852 -12.67298 -12.58527 -12.08719 -11.83227 -11.77379 -11.66088 -11.13944 -11.03836 -10.23698 -10.13603 -9.36623 -9.29938 -8.05227 -5.40512 -0.16066 0.29013 1.39588 1.41084 1.48292 1.78701 2.02541 2.16328 2.46782 2.80474 3.26483 3.61922 3.67141 3.80267 3.84877 3.99151 4.08254 4.11793 4.19246 4.19876 4.36733 4.40093 4.51347 4.54492 4.85208 4.92786 4.96330 4.97995 5.07689 5.08858 5.17167 5.27987 5.30179 5.34988 5.61179 5.72435 6.17625 6.34149 6.48051 7.03024 7.14483 7.77680 7.95255 9.15373 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038015 B = 0.002598 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.369460 B =10773.119114 C =11478.437288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.325 6.325 4 C 0.153 3.847 5 C -0.214 4.214 6 C -0.037 4.037 7 C -0.191 4.191 8 C 0.559 3.441 9 O -0.586 6.586 10 N -0.708 5.708 11 C 0.122 3.878 12 C 0.150 3.850 13 N -0.759 5.759 14 C -0.237 4.237 15 H 0.065 0.935 16 C -0.061 4.061 17 N -0.979 5.979 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.254 1.254 22 C -0.028 4.028 23 C -0.168 4.168 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.366 0.634 37 H 0.259 0.741 38 H 0.136 0.864 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.334 4.689 -0.010 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.239 6.239 4 C 0.107 3.893 5 C -0.232 4.232 6 C -0.056 4.056 7 C -0.195 4.195 8 C 0.348 3.652 9 O -0.467 6.467 10 N -0.360 5.360 11 C -0.003 4.003 12 C 0.023 3.977 13 N -0.405 5.405 14 C -0.368 4.368 15 H 0.083 0.917 16 C -0.253 4.253 17 N -0.629 5.629 18 Si 0.779 3.221 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.179 1.179 22 C -0.047 4.047 23 C -0.186 4.186 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.180 0.820 30 H 0.172 0.828 31 H 0.253 0.747 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.200 0.800 37 H 0.068 0.932 38 H 0.154 0.846 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -32.121 5.357 -0.011 32.565 hybrid contribution 1.032 0.232 -0.002 1.058 sum -31.089 5.588 -0.013 31.588 Atomic orbital electron populations 1.21820 0.91628 1.04211 1.03196 1.23180 0.96884 0.80372 1.02895 1.86052 1.18462 1.31875 1.87492 1.19428 0.82969 0.94355 0.92586 1.21463 0.93451 0.99432 1.08904 1.21366 0.95542 0.95816 0.92841 1.19737 0.91333 0.95573 1.12818 1.18571 0.87290 0.84022 0.75307 1.90752 1.78387 1.25240 1.52362 1.45608 1.05956 1.09860 1.74624 1.21266 0.79517 0.97569 1.01915 1.20836 0.82497 0.94354 0.99964 1.42553 1.02115 1.04607 1.91260 1.19009 0.88231 0.87735 1.41797 0.91726 1.25492 0.96396 1.00983 1.02418 1.69863 1.03202 1.30582 1.59270 0.85454 0.77814 0.80627 0.78189 1.20363 1.22026 1.17904 1.21106 0.92100 0.98950 0.92579 1.20533 0.94560 0.95944 1.07578 0.91873 0.88233 0.91875 0.90504 0.90498 0.82036 0.82804 0.74673 0.92035 0.91910 0.93850 0.93971 0.80040 0.93193 0.84645 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 71.98 0.74 -0.13 16 2 C 0.04 0.33 5.45 71.98 0.39 0.72 16 3 O -0.33 -4.85 10.12 -90.34 -0.91 -5.77 16 4 C 0.15 2.51 6.70 22.63 0.15 2.66 16 5 C -0.21 -2.92 9.01 22.32 0.20 -2.72 16 6 C -0.04 -0.59 9.53 22.50 0.21 -0.37 16 7 C -0.19 -4.24 5.87 -20.08 -0.12 -4.36 16 8 C 0.56 15.85 7.76 86.72 0.67 16.53 16 9 O -0.59 -21.43 16.34 -3.98 -0.07 -21.50 16 10 N -0.71 -17.85 5.51 -466.20 -2.57 -20.41 16 11 C 0.12 3.80 5.79 86.38 0.50 4.30 16 12 C 0.15 5.32 6.37 86.38 0.55 5.87 16 13 N -0.76 -35.15 5.41 -343.46 -1.86 -37.00 16 14 C -0.24 -13.37 10.47 84.03 0.88 -12.49 16 15 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 16 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 17 N -0.98 -62.32 13.97 21.65 0.30 -62.01 16 18 Si 0.95 45.74 27.74 68.60 1.90 47.64 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 22 C -0.03 -0.60 9.58 22.50 0.22 -0.39 16 23 C -0.17 -2.98 9.97 22.32 0.22 -2.76 16 24 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.46 7.66 -2.39 -0.02 0.44 16 28 H 0.08 0.45 7.64 -2.39 -0.02 0.44 16 29 H 0.16 1.25 6.28 -2.91 -0.02 1.23 16 30 H 0.15 1.63 6.39 -2.91 -0.02 1.61 16 31 H 0.42 7.64 6.49 -92.71 -0.60 7.04 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.37 16.50 5.53 -92.71 -0.51 15.99 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.14 3.00 7.64 -2.91 -0.02 2.97 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -74.84 331.18 1.79 -73.05 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.10 Total: 22.24 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.09 Total: 3.76 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.12 Total: -119.43 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.98 Total: -27.26 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Total: -74.84 1.79 -73.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149594341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.042 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds