Wall clock time and date at job start Tue Mar 31 2020 00:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47482 * 2 1 4 4 C 1.35656 * 117.00079 * 179.97438 * 3 2 1 5 5 C 1.38714 * 120.14915 * 359.97438 * 4 3 2 6 6 C 1.38051 * 120.08468 * 179.97438 * 5 4 3 7 7 C 1.38555 * 120.38906 * 0.02562 * 6 5 4 8 8 C 1.37785 * 120.30047 * 0.02562 * 7 6 5 9 9 C 1.39713 * 119.90793 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.19038 * 180.02562 * 9 8 7 11 11 O 1.21581 * 119.99746 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99732 * 359.97438 * 10 9 8 13 13 C 1.46506 * 119.99862 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47253 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46912 * 179.97438 * 14 13 12 16 16 C 1.36934 * 119.99581 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00325 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99789 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48511 * 109.47052 * 90.00074 * 20 18 16 22 22 H 1.48503 * 109.47393 * 210.00068 * 20 18 16 23 23 H 1.48500 * 109.47361 * 330.00414 * 20 18 16 24 24 H 1.08995 * 109.47138 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.46873 * 59.99301 * 1 2 3 26 26 H 1.09000 * 109.47783 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46984 * 240.00256 * 2 1 3 28 28 H 1.09003 * 109.46873 * 120.00698 * 2 1 3 29 29 H 1.07995 * 119.95834 * 0.02706 * 5 4 3 30 30 H 1.07997 * 119.80544 * 180.27727 * 6 5 4 31 31 H 1.07998 * 119.84759 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.04295 * 180.02562 * 8 7 6 33 33 H 0.97003 * 120.00649 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.46797 * 299.99981 * 13 12 10 35 35 H 1.09005 * 109.46904 * 59.99644 * 13 12 10 36 36 H 1.08992 * 109.47425 * 300.00048 * 14 13 12 37 37 H 1.09003 * 109.46885 * 59.99943 * 14 13 12 38 38 H 0.96998 * 120.00333 * 0.02562 * 15 14 13 39 39 H 0.97005 * 119.99991 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3513 1.5249 0.0005 5 6 4.1991 0.4270 0.0016 6 6 5.5675 0.6094 0.0016 7 6 6.1044 1.8867 0.0011 8 6 5.2770 2.9885 0.0011 9 6 3.8903 2.8184 0.0011 10 6 2.9987 3.9938 0.0005 11 8 1.7924 3.8417 0.0001 12 7 3.5213 5.2361 0.0006 13 6 2.6359 6.4033 0.0006 14 6 3.4769 7.6814 0.0013 15 7 2.5915 8.8486 0.0007 16 6 3.1226 10.1107 0.0016 17 1 4.1941 10.2458 0.0024 18 6 2.2836 11.2167 0.0016 19 7 0.9777 11.0521 0.0011 20 14 3.0079 12.9385 0.0037 21 1 3.2013 13.3959 -1.3960 22 1 2.0816 13.8645 0.7034 23 1 4.3168 12.9241 0.7049 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 3.7881 -0.5717 0.0016 30 1 6.2233 -0.2486 -0.0021 31 1 7.1762 2.0192 0.0015 32 1 5.7000 3.9822 0.0003 33 1 4.4838 5.3574 0.0006 34 1 2.0070 6.3822 -0.8894 35 1 2.0069 6.3822 0.8906 36 1 4.1056 7.7023 0.8914 37 1 4.1062 7.7027 -0.8885 38 1 1.6291 8.7273 0.0003 39 1 0.3915 11.8249 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149604598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:05 Heat of formation + Delta-G solvation = -37.067538 kcal Electronic energy + Delta-G solvation = -20659.899714 eV Core-core repulsion = 17375.248092 eV Total energy + Delta-G solvation = -3284.651622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67896 -38.93761 -37.56795 -35.57741 -33.79382 -32.23444 -31.72532 -30.81590 -29.77426 -27.60834 -24.47395 -24.12732 -22.95595 -21.89243 -21.38636 -20.30317 -18.68798 -17.39509 -17.06292 -16.34374 -16.26016 -15.24137 -15.18108 -15.13485 -14.80769 -14.46350 -13.90542 -13.61526 -13.46584 -13.21462 -13.12333 -12.80940 -12.78272 -12.22631 -12.19918 -11.86021 -11.36214 -11.28758 -11.05593 -10.99025 -10.79388 -10.76658 -10.09658 -9.80627 -9.58309 -9.32417 -8.93540 -8.74371 -8.42273 -6.96341 -5.76853 -3.07422 0.68260 1.14557 2.93124 2.96616 3.33019 3.44188 3.49265 3.51111 3.75681 4.44977 4.47839 4.60489 4.67447 4.75331 4.78516 4.94319 4.99377 5.08628 5.17298 5.45494 5.48233 5.53426 5.59685 5.64518 5.84478 5.84931 5.94084 5.99501 6.01849 6.14965 6.21673 6.42749 6.56505 6.75710 6.82482 7.20267 7.68249 7.73971 8.40559 8.47593 9.51999 10.07327 10.42217 11.45792 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027235 B = 0.003024 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.851769 B = 9258.024857 C =10254.825632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.277 6.277 4 C 0.186 3.814 5 C -0.223 4.223 6 C -0.056 4.056 7 C -0.169 4.169 8 C -0.047 4.047 9 C -0.168 4.168 10 C 0.555 3.445 11 O -0.520 6.520 12 N -0.723 5.723 13 C 0.113 3.887 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -26.219 0.018 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.189 6.189 4 C 0.137 3.863 5 C -0.242 4.242 6 C -0.075 4.075 7 C -0.187 4.187 8 C -0.066 4.066 9 C -0.172 4.172 10 C 0.341 3.659 11 O -0.396 6.396 12 N -0.375 5.375 13 C -0.011 4.011 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.578 -26.018 0.026 27.100 hybrid contribution 0.693 0.745 -0.010 1.018 sum 8.272 -25.273 0.016 26.593 Atomic orbital electron populations 1.21742 0.92429 1.02451 1.04184 1.22883 0.96520 0.82230 1.01036 1.86411 1.17680 1.28365 1.86400 1.19032 0.83226 0.92616 0.91377 1.21238 0.94391 0.97963 1.10610 1.21106 0.94242 0.97527 0.94597 1.20989 1.00167 0.92156 1.05392 1.21237 0.91214 0.99691 0.94452 1.19465 0.93685 0.91500 1.12578 1.17942 0.87925 0.82669 0.77350 1.90827 1.14352 1.85831 1.48592 1.45832 1.10445 1.05625 1.75628 1.21560 0.93113 0.83777 1.02601 1.20758 0.93254 0.85980 0.98367 1.42194 1.05243 1.00362 1.89670 1.19196 0.91890 0.83019 1.43322 0.91036 1.24782 0.95352 0.98015 1.02741 1.69673 1.01549 1.29407 1.57261 0.86150 0.77831 0.84398 0.77530 1.21644 1.21702 1.20718 0.91246 0.91251 0.90570 0.92108 0.92106 0.84969 0.85433 0.85234 0.84777 0.76924 0.91257 0.91263 0.95801 0.95809 0.77979 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.28 -3.86 8.21 -40.55 -0.33 -4.20 16 4 C 0.19 2.38 6.70 -38.70 -0.26 2.12 16 5 C -0.22 -2.08 9.03 -39.47 -0.36 -2.44 16 6 C -0.06 -0.44 10.03 -39.53 -0.40 -0.84 16 7 C -0.17 -1.38 10.02 -39.63 -0.40 -1.77 16 8 C -0.05 -0.47 9.54 -39.20 -0.37 -0.84 16 9 C -0.17 -2.25 5.89 -104.85 -0.62 -2.87 16 10 C 0.55 9.19 7.76 -12.47 -0.10 9.09 16 11 O -0.52 -10.63 15.16 -16.58 -0.25 -10.88 16 12 N -0.72 -10.92 5.51 -61.35 -0.34 -11.25 16 13 C 0.11 2.06 5.79 -4.04 -0.02 2.04 16 14 C 0.14 2.92 6.37 -4.04 -0.03 2.89 16 15 N -0.73 -18.95 5.60 -59.91 -0.34 -19.29 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 30 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 1.04 6.40 -52.49 -0.34 0.71 16 33 H 0.40 4.71 6.50 -40.82 -0.27 4.44 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 10.62 7.67 -40.82 -0.31 10.31 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -35.26 332.22 -8.15 -43.41 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.39 Total: 7.99 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.21 Total: -0.37 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.05 Total: -58.45 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.58 Total: -15.08 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.26 -8.15 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149604598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.338 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds