Wall clock time and date at job start Tue Mar 31 2020 00:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47482 * 2 1 4 4 C 1.35656 * 117.00079 * 179.97438 * 3 2 1 5 5 C 1.38714 * 120.14915 * 359.97438 * 4 3 2 6 6 C 1.38051 * 120.08468 * 179.97438 * 5 4 3 7 7 C 1.38555 * 120.38906 * 0.02562 * 6 5 4 8 8 C 1.37785 * 120.30047 * 0.02562 * 7 6 5 9 9 C 1.39713 * 119.90793 * 359.97438 * 8 7 6 10 10 C 1.47535 * 120.19038 * 180.02562 * 9 8 7 11 11 O 1.21581 * 119.99746 * 179.97438 * 10 9 8 12 12 N 1.34774 * 119.99732 * 359.97438 * 10 9 8 13 13 C 1.46506 * 119.99862 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47253 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46912 * 179.97438 * 14 13 12 16 16 C 1.36934 * 119.99581 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00325 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99789 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48511 * 109.47052 * 90.00074 * 20 18 16 22 22 H 1.48503 * 109.47393 * 210.00068 * 20 18 16 23 23 H 1.48500 * 109.47361 * 330.00414 * 20 18 16 24 24 H 1.08995 * 109.47138 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.46873 * 59.99301 * 1 2 3 26 26 H 1.09000 * 109.47783 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46984 * 240.00256 * 2 1 3 28 28 H 1.09003 * 109.46873 * 120.00698 * 2 1 3 29 29 H 1.07995 * 119.95834 * 0.02706 * 5 4 3 30 30 H 1.07997 * 119.80544 * 180.27727 * 6 5 4 31 31 H 1.07998 * 119.84759 * 179.97438 * 7 6 5 32 32 H 1.07996 * 120.04295 * 180.02562 * 8 7 6 33 33 H 0.97003 * 120.00649 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.46797 * 299.99981 * 13 12 10 35 35 H 1.09005 * 109.46904 * 59.99644 * 13 12 10 36 36 H 1.08992 * 109.47425 * 300.00048 * 14 13 12 37 37 H 1.09003 * 109.46885 * 59.99943 * 14 13 12 38 38 H 0.96998 * 120.00333 * 0.02562 * 15 14 13 39 39 H 0.97005 * 119.99991 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3513 1.5249 0.0005 5 6 4.1991 0.4270 0.0016 6 6 5.5675 0.6094 0.0016 7 6 6.1044 1.8867 0.0011 8 6 5.2770 2.9885 0.0011 9 6 3.8903 2.8184 0.0011 10 6 2.9987 3.9938 0.0005 11 8 1.7924 3.8417 0.0001 12 7 3.5213 5.2361 0.0006 13 6 2.6359 6.4033 0.0006 14 6 3.4769 7.6814 0.0013 15 7 2.5915 8.8486 0.0007 16 6 3.1226 10.1107 0.0016 17 1 4.1941 10.2458 0.0024 18 6 2.2836 11.2167 0.0016 19 7 0.9777 11.0521 0.0011 20 14 3.0079 12.9385 0.0037 21 1 3.2013 13.3959 -1.3960 22 1 2.0816 13.8645 0.7034 23 1 4.3168 12.9241 0.7049 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8900 29 1 3.7881 -0.5717 0.0016 30 1 6.2233 -0.2486 -0.0021 31 1 7.1762 2.0192 0.0015 32 1 5.7000 3.9822 0.0003 33 1 4.4838 5.3574 0.0006 34 1 2.0070 6.3822 -0.8894 35 1 2.0069 6.3822 0.8906 36 1 4.1056 7.7023 0.8914 37 1 4.1062 7.7027 -0.8885 38 1 1.6291 8.7273 0.0003 39 1 0.3915 11.8249 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149604598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:04 Heat of formation + Delta-G solvation = -61.467307 kcal Electronic energy + Delta-G solvation = -20660.957767 eV Core-core repulsion = 17375.248092 eV Total energy + Delta-G solvation = -3285.709675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59348 -40.10152 -38.36599 -37.28960 -35.50385 -33.35232 -32.90016 -32.08149 -30.55043 -29.28559 -25.89611 -25.11514 -24.26988 -23.09336 -22.53596 -21.45142 -19.66631 -19.20276 -18.21711 -17.32168 -17.14486 -16.66579 -16.58549 -16.19374 -15.99420 -15.60280 -15.22429 -15.18721 -14.92141 -14.37958 -14.26715 -14.19372 -13.40844 -13.13292 -13.04890 -12.90915 -12.90172 -12.66311 -12.61007 -12.46502 -12.08830 -11.99169 -11.86019 -11.67512 -10.99410 -10.91284 -10.25489 -9.98132 -9.22095 -9.07556 -7.96817 -5.28766 -0.13147 0.42472 1.48341 1.51251 1.59670 1.89360 2.06189 2.25039 2.58128 2.86448 3.37282 3.65869 3.78465 3.95776 4.01066 4.02643 4.14169 4.18844 4.20074 4.25541 4.34879 4.42320 4.49687 4.56101 4.82100 4.86202 4.89560 5.00720 5.11609 5.14455 5.23862 5.34151 5.36683 5.47825 5.48771 5.79473 6.23547 6.41589 6.58068 7.24100 7.29628 8.00904 8.24615 9.27051 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027235 B = 0.003024 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.851769 B = 9258.024857 C =10254.825632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.318 6.318 4 C 0.161 3.839 5 C -0.223 4.223 6 C -0.044 4.044 7 C -0.164 4.164 8 C -0.048 4.048 9 C -0.203 4.203 10 C 0.550 3.450 11 O -0.571 6.571 12 N -0.710 5.710 13 C 0.130 3.870 14 C 0.151 3.849 15 N -0.748 5.748 16 C -0.249 4.249 17 H 0.085 0.915 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.265 1.265 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.414 0.586 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.373 0.627 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 -27.923 0.031 30.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.230 6.230 4 C 0.113 3.887 5 C -0.242 4.242 6 C -0.062 4.062 7 C -0.182 4.182 8 C -0.066 4.066 9 C -0.207 4.207 10 C 0.340 3.660 11 O -0.451 6.451 12 N -0.364 5.364 13 C 0.005 3.995 14 C 0.024 3.976 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.118 -27.756 0.039 29.900 hybrid contribution -0.298 1.109 -0.016 1.149 sum 10.820 -26.647 0.024 28.760 Atomic orbital electron populations 1.21790 0.92524 1.03979 1.02453 1.23158 0.96565 0.80891 1.02759 1.86366 1.18856 1.30990 1.86814 1.19404 0.83355 0.93496 0.92410 1.21543 0.94855 0.97935 1.09838 1.21630 0.93971 0.98817 0.91799 1.21424 1.01579 0.91596 1.03625 1.21488 0.89815 1.01525 0.93790 1.19402 0.94637 0.90354 1.16336 1.18590 0.87873 0.83639 0.75940 1.90789 1.16711 1.86569 1.51079 1.45609 1.10960 1.04481 1.75310 1.21134 0.92990 0.84426 1.00920 1.20837 0.92728 0.84687 0.99377 1.42441 1.05354 1.01528 1.89795 1.19671 0.92556 0.84016 1.41766 0.89757 1.25708 0.95743 1.02276 1.03304 1.69851 1.03025 1.30207 1.59147 0.85030 0.77462 0.79044 0.77515 1.21226 1.22299 1.18914 0.92960 0.92967 0.87339 0.90242 0.90239 0.82628 0.81627 0.81948 0.83062 0.74829 0.93069 0.93073 0.94280 0.94280 0.79512 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.04 0.72 5.46 71.98 0.39 1.12 16 3 O -0.32 -9.19 8.21 -68.80 -0.56 -9.75 16 4 C 0.16 4.07 6.70 22.84 0.15 4.23 16 5 C -0.22 -3.58 9.03 22.34 0.20 -3.38 16 6 C -0.04 -0.50 10.03 22.30 0.22 -0.28 16 7 C -0.16 -2.02 10.02 22.24 0.22 -1.79 16 8 C -0.05 -0.85 9.54 22.52 0.21 -0.63 16 9 C -0.20 -5.41 5.89 -20.01 -0.12 -5.53 16 10 C 0.55 18.95 7.76 86.70 0.67 19.62 16 11 O -0.57 -25.01 15.16 16.95 0.26 -24.75 16 12 N -0.71 -21.65 5.51 -466.26 -2.57 -24.22 16 13 C 0.13 4.90 5.79 86.38 0.50 5.40 16 14 C 0.15 6.02 6.37 86.38 0.55 6.57 16 15 N -0.75 -39.32 5.60 -343.46 -1.92 -41.24 16 16 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 19 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 20 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 28 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 29 H 0.16 1.64 6.30 -2.91 -0.02 1.62 16 30 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 32 H 0.15 1.96 6.40 -2.91 -0.02 1.95 16 33 H 0.41 9.38 6.50 -92.71 -0.60 8.78 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.37 21.27 7.67 -92.71 -0.71 20.56 16 39 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -79.65 332.22 2.33 -77.32 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.24 Total: 28.92 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.06 Total: 6.20 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -4.21 Total: -126.27 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.31 Total: -34.51 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.65 2.33 -77.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149604598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.853 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds