Wall clock time and date at job start Tue Mar 31 2020 01:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.46870 * 2 1 4 4 C 1.34234 * 116.99798 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.47046 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00228 * 269.99625 * 7 6 4 9 9 C 1.50692 * 109.47482 * 270.00126 * 8 7 6 10 10 H 1.08000 * 119.99999 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00074 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00306 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47396 * 89.99835 * 13 11 9 15 15 H 1.48506 * 109.47255 * 209.99781 * 13 11 9 16 16 H 1.48503 * 109.47051 * 329.99405 * 13 11 9 17 17 C 1.39009 * 120.00026 * 90.00069 * 7 6 4 18 18 C 1.39135 * 119.70822 * 184.99983 * 17 7 6 19 19 C 1.38297 * 119.09786 * 180.25706 * 18 17 7 20 20 C 1.50700 * 120.74853 * 179.72023 * 19 18 17 21 21 C 1.38886 * 118.50225 * 359.43644 * 19 18 17 22 22 C 1.38026 * 119.33120 * 0.58169 * 21 19 18 23 23 N 1.31974 * 120.85540 * 359.68539 * 22 21 19 24 24 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46912 * 300.00298 * 1 2 3 26 26 H 1.09001 * 109.47111 * 60.00033 * 1 2 3 27 27 H 1.08989 * 109.47100 * 239.99769 * 2 1 3 28 28 H 1.08998 * 109.46756 * 119.99293 * 2 1 3 29 29 H 1.09000 * 109.47488 * 59.99569 * 6 4 3 30 30 H 1.09000 * 109.47324 * 299.99664 * 6 4 3 31 31 H 1.08996 * 109.46706 * 30.00723 * 8 7 6 32 32 H 1.09001 * 109.46889 * 150.00302 * 8 7 6 33 33 H 0.96998 * 120.00413 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.44854 * 359.97438 * 18 17 7 35 35 H 1.08998 * 109.47124 * 89.99762 * 20 19 18 36 36 H 1.08996 * 109.46720 * 209.99560 * 20 19 18 37 37 H 1.08990 * 109.46697 * 329.99764 * 20 19 18 38 38 H 1.08003 * 120.33334 * 180.29414 * 21 19 18 39 39 H 1.08004 * 119.57370 * 179.69860 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1152 2.8230 1.2677 9 6 6.4404 4.2289 1.7021 10 1 6.1333 5.0667 1.0937 11 6 7.1308 4.4455 2.8756 12 7 7.5052 3.4253 3.6163 13 14 7.5333 6.1883 3.4144 14 1 6.4295 6.7131 4.2577 15 1 8.7956 6.1855 4.1968 16 1 7.6951 7.0517 2.2170 17 6 6.0778 2.8238 -1.2048 18 6 7.4578 2.6460 -1.1999 19 6 8.1364 2.6165 -2.4046 20 6 9.6316 2.4323 -2.4423 21 6 7.4081 2.7546 -3.5791 22 6 6.0405 2.9280 -3.5102 23 7 5.4198 2.9577 -2.3459 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.5851 3.4699 0.8887 30 1 3.5845 3.4693 -0.8912 31 1 5.5000 2.3410 2.0275 32 1 7.0394 2.2600 1.1376 33 1 7.9913 3.5776 4.4417 34 1 7.9922 2.5370 -0.2677 35 1 9.8654 1.3692 -2.4978 36 1 10.0382 2.9399 -3.3169 37 1 10.0725 2.8546 -1.5394 38 1 7.9074 2.7312 -4.5364 39 1 5.4709 3.0406 -4.4209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:19 Heat of formation + Delta-G solvation = -48.032954 kcal Electronic energy + Delta-G solvation = -21674.369824 eV Core-core repulsion = 18389.242706 eV Total energy + Delta-G solvation = -3285.127118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15772 -39.49509 -36.65112 -35.53548 -33.38068 -32.58760 -31.71951 -29.99000 -28.64496 -27.12598 -25.93758 -23.44069 -23.10131 -21.68469 -21.19800 -19.63959 -17.44236 -16.72879 -16.59144 -16.20835 -16.02538 -15.57245 -15.03680 -14.52262 -14.19536 -13.91647 -13.77240 -13.39825 -13.15746 -12.77667 -12.55649 -12.32614 -12.25841 -12.08105 -11.94144 -11.50880 -11.37773 -11.33284 -11.10827 -10.93234 -10.61156 -10.35864 -10.32863 -10.12144 -9.82383 -9.09662 -8.84531 -8.82581 -8.54392 -6.86171 -6.13157 -4.23752 1.92349 2.01401 2.70334 2.94020 3.23972 3.31054 3.35193 3.83809 4.34603 4.54730 4.96194 4.99403 5.05100 5.15964 5.17891 5.21056 5.31744 5.46927 5.67878 5.73874 5.74119 5.78252 5.84118 5.87752 5.94349 5.94900 5.99750 6.26612 6.39703 6.56561 6.75880 6.85948 7.02123 7.26726 7.29440 7.65009 7.84543 8.07289 8.16009 8.30971 8.72917 8.90218 9.43506 10.90666 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.006867 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.296495 B = 4076.491441 C = 6099.460915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.443 3.557 5 O -0.500 6.500 6 C 0.143 3.857 7 N -0.573 5.573 8 C 0.256 3.744 9 C -0.537 4.537 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.899 3.101 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.423 3.577 18 C -0.216 4.216 19 C -0.013 4.013 20 C -0.112 4.112 21 C -0.253 4.253 22 C 0.141 3.859 23 N -0.563 5.563 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -3.415 -9.886 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.283 3.717 5 O -0.386 6.386 6 C 0.016 3.984 7 N -0.282 5.282 8 C 0.137 3.863 9 C -0.576 4.576 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.188 3.812 18 C -0.241 4.241 19 C -0.021 4.021 20 C -0.169 4.169 21 C -0.277 4.277 22 C -0.017 4.017 23 N -0.282 5.282 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.936 -3.673 -9.461 12.292 hybrid contribution 1.145 0.531 0.399 1.324 sum -5.790 -3.141 -9.061 11.203 Atomic orbital electron populations 1.21784 0.92994 1.02546 1.03394 1.22904 0.94997 0.81180 1.02251 1.86519 1.25397 1.31631 1.84628 1.25142 0.80046 0.94449 0.72026 1.90633 1.60308 1.43093 1.44593 1.20715 0.82431 0.89138 1.06163 1.46688 1.02622 1.74523 1.04410 1.19411 0.92196 0.97271 0.77466 1.21544 1.36816 0.92492 1.06713 0.91921 1.24950 0.95350 0.97414 0.96158 1.69941 1.38602 1.30194 1.14291 0.86484 0.77889 0.84302 0.78725 1.20500 1.21079 1.19763 1.18336 0.88490 0.88568 0.85762 1.21479 0.93788 1.09615 0.99222 1.19980 0.95880 0.93672 0.92571 1.20765 0.91304 1.02035 1.02794 1.21467 0.95463 1.12778 0.97949 1.22125 0.91782 0.93464 0.94280 1.67095 1.40672 1.22751 0.97711 0.90654 0.91521 0.91602 0.91715 0.91558 0.86497 0.86457 0.94731 0.94141 0.92510 0.84101 0.91127 0.91667 0.91065 0.86289 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.81 6.19 37.16 0.23 1.04 16 3 O -0.36 -5.94 10.22 -39.27 -0.40 -6.34 16 4 C 0.44 8.48 8.03 36.00 0.29 8.77 16 5 O -0.50 -11.16 16.18 -18.75 -0.30 -11.46 16 6 C 0.14 2.70 6.06 -5.20 -0.03 2.67 16 7 N -0.57 -12.71 2.06 -176.59 -0.36 -13.08 16 8 C 0.26 6.43 5.00 -5.20 -0.03 6.41 16 9 C -0.54 -14.28 9.39 -34.45 -0.32 -14.60 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 13 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.42 9.16 7.37 -155.01 -1.14 8.01 16 18 C -0.22 -4.50 8.97 -39.23 -0.35 -4.85 16 19 C -0.01 -0.23 5.91 -104.36 -0.62 -0.85 16 20 C -0.11 -1.53 10.06 36.01 0.36 -1.17 16 21 C -0.25 -3.99 9.81 -39.42 -0.39 -4.38 16 22 C 0.14 2.34 11.17 -17.57 -0.20 2.14 16 23 N -0.56 -11.12 9.08 -12.43 -0.11 -11.23 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.87 8.13 -51.94 -0.42 0.45 16 28 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.12 2.07 8.07 -51.93 -0.42 1.65 16 30 H 0.12 2.05 7.30 -51.93 -0.38 1.67 16 31 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.14 3.13 6.03 -52.49 -0.32 2.81 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -31.28 338.12 -7.89 -39.17 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.61 Total: 2.71 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.91 Total: 3.78 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.26 Total: -48.75 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.70 Total: -17.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.28 -7.89 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.860 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds