Wall clock time and date at job start Tue Mar 31 2020 01:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.46870 * 2 1 4 4 C 1.34234 * 116.99798 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99888 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00086 * 179.97438 * 4 3 2 7 7 N 1.46498 * 109.47046 * 179.97438 * 6 4 3 8 8 C 1.46500 * 120.00228 * 269.99625 * 7 6 4 9 9 C 1.50692 * 109.47482 * 270.00126 * 8 7 6 10 10 H 1.08000 * 119.99999 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00074 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00306 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47396 * 89.99835 * 13 11 9 15 15 H 1.48506 * 109.47255 * 209.99781 * 13 11 9 16 16 H 1.48503 * 109.47051 * 329.99405 * 13 11 9 17 17 C 1.39009 * 120.00026 * 90.00069 * 7 6 4 18 18 C 1.39135 * 119.70822 * 184.99983 * 17 7 6 19 19 C 1.38297 * 119.09786 * 180.25706 * 18 17 7 20 20 C 1.50700 * 120.74853 * 179.72023 * 19 18 17 21 21 C 1.38886 * 118.50225 * 359.43644 * 19 18 17 22 22 C 1.38026 * 119.33120 * 0.58169 * 21 19 18 23 23 N 1.31974 * 120.85540 * 359.68539 * 22 21 19 24 24 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46912 * 300.00298 * 1 2 3 26 26 H 1.09001 * 109.47111 * 60.00033 * 1 2 3 27 27 H 1.08989 * 109.47100 * 239.99769 * 2 1 3 28 28 H 1.08998 * 109.46756 * 119.99293 * 2 1 3 29 29 H 1.09000 * 109.47488 * 59.99569 * 6 4 3 30 30 H 1.09000 * 109.47324 * 299.99664 * 6 4 3 31 31 H 1.08996 * 109.46706 * 30.00723 * 8 7 6 32 32 H 1.09001 * 109.46889 * 150.00302 * 8 7 6 33 33 H 0.96998 * 120.00413 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.44854 * 359.97438 * 18 17 7 35 35 H 1.08998 * 109.47124 * 89.99762 * 20 19 18 36 36 H 1.08996 * 109.46720 * 209.99560 * 20 19 18 37 37 H 1.08990 * 109.46697 * 329.99764 * 20 19 18 38 38 H 1.08003 * 120.33334 * 180.29414 * 21 19 18 39 39 H 1.08004 * 119.57370 * 179.69860 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3837 2.8607 -0.0010 8 6 6.1152 2.8230 1.2677 9 6 6.4404 4.2289 1.7021 10 1 6.1333 5.0667 1.0937 11 6 7.1308 4.4455 2.8756 12 7 7.5052 3.4253 3.6163 13 14 7.5333 6.1883 3.4144 14 1 6.4295 6.7131 4.2577 15 1 8.7956 6.1855 4.1968 16 1 7.6951 7.0517 2.2170 17 6 6.0778 2.8238 -1.2048 18 6 7.4578 2.6460 -1.1999 19 6 8.1364 2.6165 -2.4046 20 6 9.6316 2.4323 -2.4423 21 6 7.4081 2.7546 -3.5791 22 6 6.0405 2.9280 -3.5102 23 7 5.4198 2.9577 -2.3459 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.5851 3.4699 0.8887 30 1 3.5845 3.4693 -0.8912 31 1 5.5000 2.3410 2.0275 32 1 7.0394 2.2600 1.1376 33 1 7.9913 3.5776 4.4417 34 1 7.9922 2.5370 -0.2677 35 1 9.8654 1.3692 -2.4978 36 1 10.0382 2.9399 -3.3169 37 1 10.0725 2.8546 -1.5394 38 1 7.9074 2.7312 -4.5364 39 1 5.4709 3.0406 -4.4209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:18 Heat of formation + Delta-G solvation = -64.768506 kcal Electronic energy + Delta-G solvation = -21675.095532 eV Core-core repulsion = 18389.242706 eV Total energy + Delta-G solvation = -3285.852826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64892 -40.93205 -38.12797 -37.13927 -35.00378 -34.35748 -32.78730 -31.40261 -30.40057 -28.47664 -27.58810 -25.21974 -24.21687 -23.19925 -22.60265 -21.14674 -19.01891 -18.50561 -18.22202 -17.74350 -17.44114 -17.00184 -16.67499 -16.17987 -15.52593 -15.38428 -15.11948 -14.92967 -14.54952 -14.24708 -13.72643 -13.65661 -13.57576 -13.45600 -13.16588 -13.08972 -12.91818 -12.72616 -12.57634 -12.51762 -12.36658 -12.05264 -12.01989 -11.57335 -11.54771 -10.70601 -10.66180 -10.27934 -10.25945 -8.54417 -8.12098 -6.39519 0.50717 0.60347 1.17488 1.40284 1.41107 1.51293 1.58425 2.25061 2.41741 3.06199 3.11278 3.68733 3.82527 3.94693 3.97632 4.08608 4.09435 4.31247 4.33103 4.42616 4.43528 4.50133 4.76721 4.80539 4.83223 4.89060 4.91531 4.97238 5.11746 5.13161 5.20036 5.24242 5.42164 5.60821 5.66164 5.89638 5.99412 6.06379 6.57483 6.72382 6.78923 7.26449 7.37791 8.83377 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.006867 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.296495 B = 4076.491441 C = 6099.460915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.449 3.551 5 O -0.539 6.539 6 C 0.142 3.858 7 N -0.587 5.587 8 C 0.278 3.722 9 C -0.543 4.543 10 H 0.058 0.942 11 C 0.016 3.984 12 N -0.926 5.926 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.270 1.270 17 C 0.397 3.603 18 C -0.253 4.253 19 C -0.013 4.013 20 C -0.110 4.110 21 C -0.240 4.240 22 C 0.136 3.864 23 N -0.574 5.574 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.008 0.992 32 H 0.014 0.986 33 H 0.268 0.732 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.163 0.837 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -2.471 -12.161 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.291 3.709 5 O -0.428 6.428 6 C 0.016 3.984 7 N -0.298 5.298 8 C 0.157 3.843 9 C -0.582 4.582 10 H 0.076 0.924 11 C -0.184 4.184 12 N -0.566 5.566 13 Si 0.792 3.208 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.194 1.194 17 C 0.164 3.836 18 C -0.278 4.278 19 C -0.021 4.021 20 C -0.167 4.167 21 C -0.262 4.262 22 C -0.022 4.022 23 N -0.294 5.294 24 H 0.120 0.880 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.181 0.819 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.432 -2.724 -11.766 14.181 hybrid contribution 1.270 0.154 0.953 1.595 sum -6.162 -2.570 -10.813 12.709 Atomic orbital electron populations 1.21806 0.89562 1.04464 1.03928 1.23280 0.97607 0.79509 1.01898 1.86511 1.23555 1.33618 1.83849 1.25120 0.80745 0.94015 0.71008 1.90612 1.61400 1.44186 1.46601 1.20842 0.80971 0.89409 1.07168 1.46462 1.03651 1.75880 1.03777 1.18850 0.90850 0.96115 0.78487 1.21705 1.36838 0.92793 1.06835 0.92379 1.25792 0.95014 1.01472 0.96099 1.70062 1.39309 1.32414 1.14770 0.85418 0.77898 0.79226 0.78303 1.19485 1.20571 1.19422 1.18510 0.88882 0.90016 0.86154 1.21448 0.93973 1.12751 0.99650 1.20457 0.97847 0.91947 0.91866 1.20841 0.88772 1.03305 1.03735 1.21945 0.95214 1.10101 0.98970 1.22950 0.92914 0.91817 0.94474 1.67128 1.41110 1.23142 0.97991 0.88010 0.91162 0.90849 0.91898 0.92249 0.85847 0.84823 0.97447 0.96811 0.92278 0.87190 0.89693 0.88523 0.92151 0.81917 0.79695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.29 71.98 0.74 -1.68 16 2 C 0.05 1.34 6.19 71.98 0.45 1.78 16 3 O -0.36 -11.71 10.22 -51.45 -0.53 -12.24 16 4 C 0.45 17.72 8.03 71.23 0.57 18.29 16 5 O -0.54 -25.13 16.18 21.98 0.36 -24.77 16 6 C 0.14 5.56 6.06 85.63 0.52 6.08 16 7 N -0.59 -27.34 2.06 -712.60 -1.47 -28.81 16 8 C 0.28 14.94 5.00 85.63 0.43 15.37 16 9 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 10 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 11 C 0.02 0.88 5.46 84.65 0.46 1.34 16 12 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 13 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.40 17.70 7.37 133.06 0.98 18.68 16 18 C -0.25 -10.95 8.97 22.50 0.20 -10.75 16 19 C -0.01 -0.45 5.91 -19.69 -0.12 -0.56 16 20 C -0.11 -2.80 10.06 71.24 0.72 -2.09 16 21 C -0.24 -6.75 9.81 22.37 0.22 -6.53 16 22 C 0.14 4.11 11.17 84.62 0.95 5.06 16 23 N -0.57 -22.30 9.08 -193.25 -1.75 -24.06 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.12 4.54 8.07 -2.39 -0.02 4.52 16 30 H 0.13 4.70 7.30 -2.39 -0.02 4.69 16 31 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 32 H 0.01 0.81 5.98 -2.39 -0.01 0.80 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.11 5.33 6.03 -2.91 -0.02 5.31 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.06 1.66 8.10 -2.39 -0.02 1.65 16 38 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -70.93 338.12 6.31 -64.62 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.04 Total: 18.64 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.36 Total: 15.18 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -2.94 Total: -106.68 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.17 Total: -37.01 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.93 6.31 -64.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.149 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds