Wall clock time and date at job start Tue Mar 31 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45196 * 109.46562 * 2 1 4 4 C 1.34674 * 116.99380 * 179.97438 * 3 2 1 5 5 O 1.21420 * 120.00259 * 0.02562 * 4 3 2 6 6 C 1.48069 * 119.99961 * 179.97438 * 4 3 2 7 7 C 1.40067 * 120.88417 * 0.27399 * 6 4 3 8 8 C 1.37943 * 119.16686 * 180.31948 * 7 6 4 9 9 N 1.31923 * 121.00825 * 359.67874 * 8 7 6 10 10 C 1.32309 * 121.95384 * 0.02562 * 9 8 7 11 11 N 1.39029 * 119.64214 * 180.02562 * 10 9 8 12 12 C 1.46493 * 120.00266 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47382 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47503 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00487 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99776 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46910 * 90.00472 * 19 17 15 21 21 H 1.48503 * 109.46889 * 209.99931 * 19 17 15 22 22 H 1.48500 * 109.46880 * 329.99992 * 19 17 15 23 23 C 1.39126 * 120.71982 * 359.97438 * 10 9 8 24 24 H 1.09006 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46934 * 299.99883 * 1 2 3 26 26 H 1.09001 * 109.46815 * 60.00295 * 1 2 3 27 27 H 1.09002 * 109.46934 * 240.00117 * 2 1 3 28 28 H 1.09001 * 109.46815 * 119.99705 * 2 1 3 29 29 H 1.08002 * 120.41404 * 0.03749 * 7 6 4 30 30 H 1.07998 * 119.49810 * 179.70086 * 8 7 6 31 31 H 0.97006 * 119.99371 * 359.97397 * 11 10 9 32 32 H 1.08999 * 109.46956 * 299.99723 * 12 11 10 33 33 H 1.08996 * 109.47439 * 59.99644 * 12 11 10 34 34 H 1.09002 * 109.46517 * 300.00161 * 13 12 11 35 35 H 1.08996 * 109.47262 * 59.99396 * 13 12 11 36 36 H 1.08999 * 109.47069 * 299.99681 * 14 13 12 37 37 H 1.09004 * 109.47132 * 59.99856 * 14 13 12 38 38 H 0.97004 * 120.00365 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.53754 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0888 0.5825 0.0005 6 6 3.9150 2.9137 0.0000 7 6 3.0791 4.0375 0.0047 8 6 3.6442 5.2958 -0.0027 9 7 4.9541 5.4525 -0.0077 10 6 5.7827 4.4210 -0.0064 11 7 7.1554 4.6416 -0.0114 12 6 8.0800 3.5054 -0.0094 13 6 9.5208 4.0202 -0.0151 14 6 10.4864 2.8335 -0.0124 15 6 11.9056 3.3405 -0.0186 16 1 12.0993 4.4030 -0.0236 17 6 12.9566 2.4481 -0.0170 18 7 12.7206 1.1544 -0.0105 19 14 14.7156 3.0767 -0.0240 20 1 15.1850 3.2496 1.3742 21 1 15.5881 2.0982 -0.7216 22 1 14.7720 4.3818 -0.7302 23 6 5.2954 3.1179 0.0009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0054 3.9203 0.0094 30 1 3.0046 6.1660 -0.0041 31 1 7.5008 5.5481 -0.0161 32 1 7.9134 2.9029 0.8836 33 1 7.9081 2.8955 -0.8963 34 1 9.6877 4.6229 -0.9079 35 1 9.6924 4.6298 0.8720 36 1 10.3194 2.2312 0.8806 37 1 10.3150 2.2235 -0.8994 38 1 13.4600 0.5264 -0.0089 39 1 5.9744 2.2780 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:37 Heat of formation + Delta-G solvation = -63.229913 kcal Electronic energy + Delta-G solvation = -20261.574517 eV Core-core repulsion = 16975.788409 eV Total energy + Delta-G solvation = -3285.786107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91766 -39.83937 -36.84859 -36.41610 -33.73386 -32.94194 -31.82026 -31.61328 -29.39118 -26.50262 -25.68299 -23.69040 -23.19209 -22.06367 -21.33621 -20.31448 -18.40084 -17.49861 -16.81845 -16.69874 -16.29443 -15.64845 -15.44364 -15.12115 -14.51686 -14.47866 -14.25779 -14.07658 -13.81797 -13.63527 -13.10618 -12.38326 -12.31464 -12.07476 -12.06263 -11.84000 -11.82194 -10.96075 -10.91121 -10.83229 -10.75523 -10.59818 -10.36339 -9.97330 -9.71045 -9.63000 -9.51113 -9.16374 -8.39543 -7.68053 -6.04185 -4.07258 0.52184 1.24882 2.28465 2.46424 3.24376 3.30014 3.36494 3.39755 3.83061 4.31136 4.42869 4.54778 4.59519 4.63717 4.91741 4.94780 4.98959 5.12515 5.29484 5.31857 5.41902 5.54020 5.56922 5.59468 5.63349 5.73112 5.98212 6.05262 6.13284 6.33129 6.51451 6.59904 6.91724 7.06409 7.49865 7.59575 7.65187 7.71300 7.94003 8.11191 8.35411 8.99201 9.57224 11.07122 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.002864 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.596474 B = 9775.749001 C =10915.981958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.510 3.490 5 O -0.493 6.493 6 C -0.037 4.037 7 C -0.197 4.197 8 C 0.145 3.855 9 N -0.530 5.530 10 C 0.406 3.594 11 N -0.713 5.713 12 C 0.119 3.881 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.177 4.177 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.161 0.839 31 H 0.407 0.593 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.113 2.568 0.029 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.354 3.646 5 O -0.380 6.380 6 C -0.046 4.046 7 C -0.220 4.220 8 C -0.013 4.013 9 N -0.249 5.249 10 C 0.168 3.832 11 N -0.344 5.344 12 C -0.005 4.005 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.203 4.203 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.160 0.840 30 H 0.179 0.821 31 H 0.243 0.757 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -24.319 2.694 0.020 24.468 hybrid contribution 0.824 -0.476 0.011 0.952 sum -23.496 2.217 0.030 23.600 Atomic orbital electron populations 1.21812 0.92402 1.03089 1.03595 1.23093 0.95433 0.79784 1.02962 1.86527 1.23514 1.32622 1.84154 1.21157 0.80731 0.89685 0.73063 1.90869 1.60387 1.42242 1.44516 1.19097 0.93308 0.90251 1.01931 1.22003 1.01064 0.92355 1.06612 1.22381 0.89633 0.96506 0.92806 1.67080 1.04900 1.33808 1.19123 1.18299 0.86283 0.88267 0.90329 1.44934 1.00686 1.10563 1.78187 1.21809 0.89706 0.87612 1.01350 1.21867 0.91246 1.01385 1.01260 1.19035 0.92712 0.91952 0.97657 1.21191 0.91011 0.92911 1.50992 0.92602 1.25026 0.99330 0.94872 0.95226 1.69958 1.31761 1.01051 1.50530 0.86574 0.84546 0.78636 0.78128 1.20632 1.21187 1.19866 1.21583 0.94504 0.97641 1.06541 0.90103 0.91384 0.91390 0.90960 0.90959 0.83959 0.82148 0.75726 0.91869 0.91861 0.92482 0.92487 0.96239 0.96231 0.92895 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.35 -3.79 9.57 -40.42 -0.39 -4.17 16 4 C 0.51 6.77 7.92 34.76 0.28 7.05 16 5 O -0.49 -7.89 16.23 -19.20 -0.31 -8.20 16 6 C -0.04 -0.48 5.90 -104.69 -0.62 -1.10 16 7 C -0.20 -2.07 9.70 -39.00 -0.38 -2.44 16 8 C 0.14 1.54 11.16 -17.62 -0.20 1.34 16 9 N -0.53 -7.23 10.36 -12.48 -0.13 -7.36 16 10 C 0.41 5.95 7.65 -155.07 -1.19 4.76 16 11 N -0.71 -10.54 5.73 -60.44 -0.35 -10.88 16 12 C 0.12 1.95 4.89 -4.04 -0.02 1.93 16 13 C -0.12 -2.30 5.27 -26.73 -0.14 -2.45 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.18 -2.56 8.89 -38.77 -0.34 -2.91 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.14 1.14 7.71 -52.49 -0.40 0.73 16 30 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.41 5.63 8.60 -40.82 -0.35 5.28 16 32 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 33 H 0.06 1.05 7.93 -51.93 -0.41 0.63 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.15 2.25 6.39 -52.49 -0.34 1.92 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -31.92 339.37 -8.57 -40.49 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.68 Total: 0.89 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.55 Total: -6.39 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.26 Total: -44.22 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.70 Total: -12.37 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.92 -8.57 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.740 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds