Wall clock time and date at job start Tue Mar 31 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.45196 * 109.46562 * 2 1 4 4 C 1.34674 * 116.99380 * 179.97438 * 3 2 1 5 5 O 1.21420 * 120.00259 * 0.02562 * 4 3 2 6 6 C 1.48069 * 119.99961 * 179.97438 * 4 3 2 7 7 C 1.40067 * 120.88417 * 0.27399 * 6 4 3 8 8 C 1.37943 * 119.16686 * 180.31948 * 7 6 4 9 9 N 1.31923 * 121.00825 * 359.67874 * 8 7 6 10 10 C 1.32309 * 121.95384 * 0.02562 * 9 8 7 11 11 N 1.39029 * 119.64214 * 180.02562 * 10 9 8 12 12 C 1.46493 * 120.00266 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47382 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47503 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00487 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99776 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00020 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46910 * 90.00472 * 19 17 15 21 21 H 1.48503 * 109.46889 * 209.99931 * 19 17 15 22 22 H 1.48500 * 109.46880 * 329.99992 * 19 17 15 23 23 C 1.39126 * 120.71982 * 359.97438 * 10 9 8 24 24 H 1.09006 * 109.46610 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46934 * 299.99883 * 1 2 3 26 26 H 1.09001 * 109.46815 * 60.00295 * 1 2 3 27 27 H 1.09002 * 109.46934 * 240.00117 * 2 1 3 28 28 H 1.09001 * 109.46815 * 119.99705 * 2 1 3 29 29 H 1.08002 * 120.41404 * 0.03749 * 7 6 4 30 30 H 1.07998 * 119.49810 * 179.70086 * 8 7 6 31 31 H 0.97006 * 119.99371 * 359.97397 * 11 10 9 32 32 H 1.08999 * 109.46956 * 299.99723 * 12 11 10 33 33 H 1.08996 * 109.47439 * 59.99644 * 12 11 10 34 34 H 1.09002 * 109.46517 * 300.00161 * 13 12 11 35 35 H 1.08996 * 109.47262 * 59.99396 * 13 12 11 36 36 H 1.08999 * 109.47069 * 299.99681 * 14 13 12 37 37 H 1.09004 * 109.47132 * 59.99856 * 14 13 12 38 38 H 0.97004 * 120.00365 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.53754 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5454 0.0005 5 8 4.0888 0.5825 0.0005 6 6 3.9150 2.9137 0.0000 7 6 3.0791 4.0375 0.0047 8 6 3.6442 5.2958 -0.0027 9 7 4.9541 5.4525 -0.0077 10 6 5.7827 4.4210 -0.0064 11 7 7.1554 4.6416 -0.0114 12 6 8.0800 3.5054 -0.0094 13 6 9.5208 4.0202 -0.0151 14 6 10.4864 2.8335 -0.0124 15 6 11.9056 3.3405 -0.0186 16 1 12.0993 4.4030 -0.0236 17 6 12.9566 2.4481 -0.0170 18 7 12.7206 1.1544 -0.0105 19 14 14.7156 3.0767 -0.0240 20 1 15.1850 3.2496 1.3742 21 1 15.5881 2.0982 -0.7216 22 1 14.7720 4.3818 -0.7302 23 6 5.2954 3.1179 0.0009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.0054 3.9203 0.0094 30 1 3.0046 6.1660 -0.0041 31 1 7.5008 5.5481 -0.0161 32 1 7.9134 2.9029 0.8836 33 1 7.9081 2.8955 -0.8963 34 1 9.6877 4.6229 -0.9079 35 1 9.6924 4.6298 0.8720 36 1 10.3194 2.2312 0.8806 37 1 10.3150 2.2235 -0.8994 38 1 13.4600 0.5264 -0.0089 39 1 5.9744 2.2780 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:37 Heat of formation + Delta-G solvation = -82.104279 kcal Electronic energy + Delta-G solvation = -20262.392971 eV Core-core repulsion = 16975.788409 eV Total energy + Delta-G solvation = -3286.604561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91650 -40.83957 -37.83460 -37.70972 -35.54442 -34.04564 -33.28095 -32.46199 -30.66815 -28.19838 -26.65390 -25.24889 -23.91005 -23.36501 -22.41522 -21.84657 -19.42235 -18.63349 -18.42924 -17.70351 -17.58948 -16.70792 -16.60134 -16.48750 -16.34537 -15.41469 -15.34855 -15.16097 -14.92973 -14.51387 -14.29502 -13.72163 -13.70678 -13.62065 -13.00991 -12.99302 -12.80270 -12.54690 -12.47829 -12.37733 -11.97120 -11.84254 -11.59304 -11.50313 -11.28346 -11.22357 -10.89050 -10.61657 -10.56920 -8.76646 -8.21487 -6.32645 -0.49716 0.28702 1.38899 1.40246 1.41382 1.43721 1.52460 2.10212 2.41055 2.84407 3.12363 3.42860 3.65268 3.87104 3.98335 3.99543 4.05753 4.12278 4.17056 4.26540 4.33625 4.50596 4.61087 4.69040 4.87899 4.90549 4.93955 4.94779 5.07658 5.10625 5.13495 5.34587 5.46707 5.51289 5.68753 5.82197 5.87690 6.21603 6.51240 6.57273 6.84429 7.07864 7.36853 8.90527 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023792 B = 0.002864 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.596474 B = 9775.749001 C =10915.981958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.343 6.343 4 C 0.513 3.487 5 O -0.531 6.531 6 C -0.048 4.048 7 C -0.174 4.174 8 C 0.150 3.850 9 N -0.540 5.540 10 C 0.392 3.608 11 N -0.715 5.715 12 C 0.137 3.863 13 C -0.102 4.102 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.063 0.937 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.262 1.262 23 C -0.200 4.200 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.176 0.824 30 H 0.206 0.794 31 H 0.411 0.589 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.011 4.471 0.031 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.259 6.259 4 C 0.358 3.642 5 O -0.421 6.421 6 C -0.057 4.057 7 C -0.197 4.197 8 C -0.009 4.009 9 N -0.259 5.259 10 C 0.156 3.844 11 N -0.347 5.347 12 C 0.012 3.988 13 C -0.140 4.140 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.186 1.186 23 C -0.227 4.227 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.193 0.807 30 H 0.222 0.778 31 H 0.248 0.752 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.260 4.622 0.022 26.664 hybrid contribution 1.209 -1.082 0.011 1.622 sum -25.051 3.540 0.033 25.300 Atomic orbital electron populations 1.21831 0.89627 1.04548 1.04084 1.23421 0.97514 0.78577 1.02740 1.86523 1.21841 1.34149 1.83411 1.21289 0.81335 0.89447 0.72124 1.90852 1.61381 1.43388 1.46435 1.19245 0.93087 0.91050 1.02346 1.22394 1.02348 0.91289 1.03626 1.23169 0.88889 0.98077 0.90723 1.67141 1.06194 1.33411 1.19116 1.18293 0.86145 0.88568 0.91407 1.44619 1.00815 1.09949 1.79279 1.21382 0.88559 0.87968 1.00867 1.21566 0.91592 0.99018 1.01860 1.18932 0.93559 0.93479 0.95299 1.21672 0.92409 0.93414 1.50539 0.91846 1.25998 1.04220 0.95018 0.94767 1.70098 1.33224 1.02450 1.51639 0.85433 0.78681 0.78366 0.78486 1.19788 1.20886 1.18611 1.21487 0.95283 0.97196 1.08689 0.88171 0.90853 0.90863 0.91284 0.91281 0.80682 0.77760 0.75183 0.92500 0.92495 0.91802 0.91789 0.98638 0.98633 0.92761 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 10.29 71.99 0.74 -0.48 16 2 C 0.05 0.80 6.19 71.99 0.45 1.25 16 3 O -0.34 -6.94 9.57 -55.84 -0.53 -7.47 16 4 C 0.51 13.57 7.92 70.43 0.56 14.13 16 5 O -0.53 -17.67 16.23 20.09 0.33 -17.35 16 6 C -0.05 -1.22 5.90 -19.91 -0.12 -1.34 16 7 C -0.17 -3.12 9.70 22.64 0.22 -2.90 16 8 C 0.15 2.66 11.16 84.61 0.94 3.60 16 9 N -0.54 -13.67 10.36 -193.41 -2.00 -15.68 16 10 C 0.39 11.37 7.65 133.08 1.02 12.39 16 11 N -0.71 -21.22 5.73 -345.14 -1.98 -23.20 16 12 C 0.14 4.65 4.89 86.38 0.42 5.08 16 13 C -0.10 -4.02 5.27 30.59 0.16 -3.86 16 14 C 0.03 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 19 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C -0.20 -5.95 8.89 22.80 0.20 -5.75 16 24 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.18 1.99 7.71 -2.91 -0.02 1.97 16 30 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.41 11.20 8.60 -92.70 -0.80 10.40 16 32 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 33 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.13 4.24 6.39 -2.91 -0.02 4.22 16 Total: -1.00 -70.66 339.37 3.81 -66.84 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.25 Total: 13.98 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.44 Total: -6.50 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -3.70 Total: -95.83 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.21 Total: -24.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.66 3.81 -66.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds