Wall clock time and date at job start Tue Mar 31 2020 01:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 119.99697 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99867 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47030 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47035 * 180.02562 * 6 5 4 8 8 C 1.39942 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.38861 * 120.02154 * 359.73393 * 8 7 6 10 10 C 1.38108 * 119.98073 * 179.74205 * 9 8 7 11 11 C 1.38696 * 120.01722 * 0.50378 * 10 9 8 12 12 O 1.36001 * 119.98124 * 179.75062 * 11 10 9 13 13 C 1.42905 * 116.99906 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00097 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00060 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46995 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47342 * 120.00368 * 18 16 14 21 21 H 1.48502 * 109.47566 * 240.00526 * 18 16 14 22 22 C 1.38702 * 120.04020 * 359.76690 * 11 10 9 23 23 C 1.38111 * 120.01708 * 359.97438 * 22 11 10 24 24 H 1.09005 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 299.99649 * 1 2 3 26 26 H 1.09000 * 109.47333 * 60.00177 * 1 2 3 27 27 H 0.96999 * 120.00047 * 0.02562 * 4 2 1 28 28 H 1.09004 * 109.47074 * 60.00441 * 5 4 2 29 29 H 1.09004 * 109.47714 * 300.00350 * 5 4 2 30 30 H 1.09004 * 109.46930 * 60.00232 * 6 5 4 31 31 H 1.09000 * 109.47312 * 300.00176 * 6 5 4 32 32 H 0.96999 * 120.00080 * 0.02562 * 7 6 5 33 33 H 1.08006 * 120.00671 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.98584 * 180.22997 * 10 9 8 35 35 H 1.08996 * 109.46967 * 300.00382 * 13 12 11 36 36 H 1.08997 * 109.46869 * 60.00097 * 13 12 11 37 37 H 0.97004 * 119.99967 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99057 * 179.97438 * 22 11 10 39 39 H 1.07997 * 120.00629 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1671 0.0000 6 6 4.1559 -2.6096 0.0001 7 7 5.6209 -2.6096 0.0001 8 6 6.3206 -3.8215 0.0008 9 6 5.6268 -5.0243 0.0070 10 6 6.3182 -6.2199 0.0022 11 6 7.7051 -6.2194 0.0019 12 8 8.3852 -7.3971 0.0023 13 6 7.6069 -8.5957 0.0026 14 6 8.5250 -9.7907 0.0037 15 1 9.5956 -9.6492 0.0046 16 6 7.9980 -11.0648 0.0047 17 7 6.6942 -11.2372 0.0042 18 14 9.1359 -12.5462 0.0068 19 1 10.5478 -12.0858 0.0078 20 1 8.8816 -13.3640 1.2199 21 1 8.8831 -13.3664 -1.2050 22 6 8.3990 -5.0184 0.0013 23 6 7.7092 -3.8219 0.0007 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6959 -2.0072 0.0005 28 1 4.0095 -0.6527 0.8895 29 1 4.0089 -0.6538 -0.8905 30 1 3.7922 -3.1236 -0.8897 31 1 3.7929 -3.1233 0.8903 32 1 6.1059 -1.7695 0.0005 33 1 4.5467 -5.0248 0.0117 34 1 5.7786 -7.1554 0.0033 35 1 6.9780 -8.6202 0.8925 36 1 6.9782 -8.6208 -0.8874 37 1 6.3235 -12.1336 0.0045 38 1 9.4790 -5.0189 0.0015 39 1 8.2496 -2.8869 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161661113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:57 Heat of formation + Delta-G solvation = -56.612766 kcal Electronic energy + Delta-G solvation = -19977.462183 eV Core-core repulsion = 16691.963017 eV Total energy + Delta-G solvation = -3285.499166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.99845 -39.40701 -37.50470 -35.88672 -34.12961 -32.83576 -31.06372 -30.59041 -29.17840 -27.69319 -26.25575 -23.76624 -23.10018 -21.38931 -21.15184 -20.68246 -17.70029 -17.27149 -16.85817 -16.48590 -16.23092 -15.93114 -15.39110 -15.00685 -14.72257 -14.45439 -14.19258 -13.90175 -13.77955 -13.13540 -13.06277 -13.02257 -12.59168 -12.45543 -12.10989 -11.95130 -11.85274 -11.54456 -11.07085 -10.93056 -10.47867 -10.40494 -10.34070 -10.10481 -9.55272 -9.21010 -9.09404 -8.60289 -8.46890 -6.69255 -6.22808 -4.25654 1.77437 2.13583 2.23552 2.62182 3.23894 3.30519 3.36806 3.65904 4.22249 4.30013 4.32100 4.49728 4.65892 4.71880 4.75974 4.97569 5.04736 5.14509 5.27792 5.33146 5.35489 5.52355 5.54149 5.80443 5.87284 5.89293 5.99550 6.38206 6.56800 6.63308 6.83990 7.02227 7.06755 7.13393 7.20881 7.51008 7.71465 7.78074 7.82038 8.00728 8.58066 8.90334 9.39657 10.88617 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034677 B = 0.002437 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.259166 B =11488.129720 C =12264.336990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.548 6.548 4 N -0.728 5.728 5 C 0.108 3.892 6 C 0.121 3.879 7 N -0.755 5.755 8 C 0.154 3.846 9 C -0.152 4.152 10 C -0.167 4.167 11 C 0.105 3.895 12 O -0.322 6.322 13 C 0.194 3.806 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.124 4.124 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.404 0.596 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.397 0.603 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 18.788 -0.006 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.425 6.425 4 N -0.381 5.381 5 C -0.017 4.017 6 C -0.005 4.005 7 N -0.391 5.391 8 C 0.055 3.945 9 C -0.174 4.174 10 C -0.187 4.187 11 C 0.057 3.943 12 O -0.236 6.236 13 C 0.121 3.879 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.144 4.144 23 C -0.174 4.174 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.239 0.761 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.793 19.275 -0.006 22.091 hybrid contribution 0.053 -1.095 0.002 1.096 sum -10.740 18.180 -0.004 21.116 Atomic orbital electron populations 1.21848 0.91312 1.04424 1.05440 1.20849 0.90731 0.83257 0.75355 1.90741 1.70813 1.31420 1.49573 1.45959 1.07080 1.09169 1.75910 1.21414 0.80199 0.96934 1.03106 1.21244 0.82350 0.95195 1.01669 1.44085 1.03575 1.05449 1.85957 1.17507 0.90888 0.85559 1.00503 1.20364 0.98847 0.90695 1.07486 1.21252 0.93752 0.98748 1.04910 1.19082 0.90482 0.87556 0.97168 1.86113 1.37521 1.12783 1.87145 1.20566 0.92039 0.78690 0.96586 1.21041 0.94044 0.89129 1.51680 0.91140 1.24939 0.95512 0.99076 0.94806 1.69961 1.10674 1.22835 1.49958 0.86208 0.80684 0.81485 0.77721 1.19360 1.20713 1.20707 1.20179 0.99782 0.89557 1.04845 1.20246 0.91671 0.97481 1.07978 0.90393 0.88616 0.88622 0.76117 0.90860 0.90868 0.92012 0.92024 0.76934 0.86718 0.84989 0.96339 0.96333 0.92470 0.85670 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.39 36.00 0.37 -0.35 16 2 C 0.51 4.27 7.94 -10.99 -0.09 4.18 16 3 O -0.55 -7.21 17.10 5.56 0.10 -7.11 16 4 N -0.73 -4.77 5.56 -60.29 -0.33 -5.11 16 5 C 0.11 0.83 5.79 -4.04 -0.02 0.81 16 6 C 0.12 1.00 5.03 -4.04 -0.02 0.98 16 7 N -0.75 -7.90 5.74 -58.58 -0.34 -8.24 16 8 C 0.15 2.17 6.66 -83.70 -0.56 1.61 16 9 C -0.15 -2.36 9.31 -39.40 -0.37 -2.73 16 10 C -0.17 -3.19 9.03 -39.46 -0.36 -3.54 16 11 C 0.11 2.18 6.69 -39.24 -0.26 1.92 16 12 O -0.32 -7.96 10.12 -19.74 -0.20 -8.16 16 13 C 0.19 5.22 4.49 36.01 0.16 5.38 16 14 C -0.52 -15.02 9.43 -34.44 -0.32 -15.34 16 15 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 18 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.12 -2.16 9.98 -39.46 -0.39 -2.55 16 23 C -0.15 -2.20 9.89 -39.40 -0.39 -2.59 16 24 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.40 1.54 8.31 -40.82 -0.34 1.20 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 7.96 -51.93 -0.41 0.10 16 31 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 32 H 0.40 3.51 8.49 -40.82 -0.35 3.16 16 33 H 0.11 1.51 6.73 -52.48 -0.35 1.15 16 34 H 0.13 2.65 6.29 -52.49 -0.33 2.32 16 35 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.02 0.52 7.66 -51.93 -0.40 0.12 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -33.95 336.50 -7.82 -41.77 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.48 Total: 1.38 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.34 Total: -10.66 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.06 Total: -38.62 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.10 Total: -15.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.95 -7.82 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161661113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.845 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds