Wall clock time and date at job start Tue Mar 31 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 119.99697 * 2 1 4 4 N 1.34777 * 120.00137 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99867 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47030 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47035 * 180.02562 * 6 5 4 8 8 C 1.39942 * 119.99708 * 179.97438 * 7 6 5 9 9 C 1.38861 * 120.02154 * 359.73393 * 8 7 6 10 10 C 1.38108 * 119.98073 * 179.74205 * 9 8 7 11 11 C 1.38696 * 120.01722 * 0.50378 * 10 9 8 12 12 O 1.36001 * 119.98124 * 179.75062 * 11 10 9 13 13 C 1.42905 * 116.99906 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00097 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00060 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46995 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47342 * 120.00368 * 18 16 14 21 21 H 1.48502 * 109.47566 * 240.00526 * 18 16 14 22 22 C 1.38702 * 120.04020 * 359.76690 * 11 10 9 23 23 C 1.38111 * 120.01708 * 359.97438 * 22 11 10 24 24 H 1.09005 * 109.46872 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 299.99649 * 1 2 3 26 26 H 1.09000 * 109.47333 * 60.00177 * 1 2 3 27 27 H 0.96999 * 120.00047 * 0.02562 * 4 2 1 28 28 H 1.09004 * 109.47074 * 60.00441 * 5 4 2 29 29 H 1.09004 * 109.47714 * 300.00350 * 5 4 2 30 30 H 1.09004 * 109.46930 * 60.00232 * 6 5 4 31 31 H 1.09000 * 109.47312 * 300.00176 * 6 5 4 32 32 H 0.96999 * 120.00080 * 0.02562 * 7 6 5 33 33 H 1.08006 * 120.00671 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.98584 * 180.22997 * 10 9 8 35 35 H 1.08996 * 109.46967 * 300.00382 * 13 12 11 36 36 H 1.08997 * 109.46869 * 60.00097 * 13 12 11 37 37 H 0.97004 * 119.99967 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99057 * 179.97438 * 22 11 10 39 39 H 1.07997 * 120.00629 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1671 0.0000 6 6 4.1559 -2.6096 0.0001 7 7 5.6209 -2.6096 0.0001 8 6 6.3206 -3.8215 0.0008 9 6 5.6268 -5.0243 0.0070 10 6 6.3182 -6.2199 0.0022 11 6 7.7051 -6.2194 0.0019 12 8 8.3852 -7.3971 0.0023 13 6 7.6069 -8.5957 0.0026 14 6 8.5250 -9.7907 0.0037 15 1 9.5956 -9.6492 0.0046 16 6 7.9980 -11.0648 0.0047 17 7 6.6942 -11.2372 0.0042 18 14 9.1359 -12.5462 0.0068 19 1 10.5478 -12.0858 0.0078 20 1 8.8816 -13.3640 1.2199 21 1 8.8831 -13.3664 -1.2050 22 6 8.3990 -5.0184 0.0013 23 6 7.7092 -3.8219 0.0007 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6959 -2.0072 0.0005 28 1 4.0095 -0.6527 0.8895 29 1 4.0089 -0.6538 -0.8905 30 1 3.7922 -3.1236 -0.8897 31 1 3.7929 -3.1233 0.8903 32 1 6.1059 -1.7695 0.0005 33 1 4.5467 -5.0248 0.0117 34 1 5.7786 -7.1554 0.0033 35 1 6.9780 -8.6202 0.8925 36 1 6.9782 -8.6208 -0.8874 37 1 6.3235 -12.1336 0.0045 38 1 9.4790 -5.0189 0.0015 39 1 8.2496 -2.8869 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161661113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:56 Heat of formation + Delta-G solvation = -81.577473 kcal Electronic energy + Delta-G solvation = -19978.544734 eV Core-core repulsion = 16691.963017 eV Total energy + Delta-G solvation = -3286.581717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.90660 -40.59724 -38.90265 -36.89715 -35.25577 -34.80460 -31.94927 -31.76831 -30.29638 -29.33356 -27.42862 -25.38803 -24.32832 -22.62163 -22.30092 -21.56287 -19.19414 -18.44739 -18.19548 -17.84507 -16.92094 -16.89060 -16.61969 -16.43422 -16.34541 -15.66881 -15.56597 -15.19217 -14.54374 -14.45932 -14.15905 -14.04903 -13.66035 -13.28653 -13.27335 -13.20082 -12.94146 -12.88043 -12.72239 -12.69802 -12.26782 -12.03147 -11.73459 -11.25400 -11.06033 -10.77109 -10.31835 -10.18158 -9.87769 -8.38155 -7.97486 -6.51892 0.45362 0.76498 1.39680 1.41201 1.55991 1.60734 1.96411 2.30223 2.80935 2.93984 2.95094 2.98325 3.67461 3.97553 3.99506 4.04693 4.07532 4.39266 4.43976 4.51297 4.54239 4.67194 4.67798 4.77126 4.86766 4.86968 5.02085 5.07342 5.10955 5.26244 5.35252 5.37241 5.49166 5.64421 5.77920 5.89516 6.36631 6.52113 6.56047 6.86913 6.94486 7.21315 7.21505 8.74485 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034677 B = 0.002437 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.259166 B =11488.129720 C =12264.336990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.505 3.495 3 O -0.603 6.603 4 N -0.717 5.717 5 C 0.115 3.885 6 C 0.122 3.878 7 N -0.743 5.743 8 C 0.175 3.825 9 C -0.155 4.155 10 C -0.179 4.179 11 C 0.049 3.951 12 O -0.345 6.345 13 C 0.215 3.785 14 C -0.556 4.556 15 H 0.065 0.935 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.122 4.122 23 C -0.146 4.146 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.420 0.580 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.408 0.592 33 H 0.140 0.860 34 H 0.107 0.893 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.273 0.727 38 H 0.134 0.866 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 19.755 -0.005 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.294 3.706 3 O -0.485 6.485 4 N -0.371 5.371 5 C -0.009 4.009 6 C -0.003 4.003 7 N -0.377 5.377 8 C 0.074 3.926 9 C -0.178 4.178 10 C -0.199 4.199 11 C 0.003 3.997 12 O -0.260 6.260 13 C 0.141 3.859 14 C -0.593 4.593 15 H 0.083 0.917 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.811 3.189 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.141 4.141 23 C -0.168 4.168 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.257 0.743 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.158 0.842 34 H 0.125 0.875 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.082 0.918 38 H 0.152 0.848 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.503 20.271 -0.004 23.308 hybrid contribution 0.138 -1.170 0.001 1.178 sum -11.365 19.101 -0.003 22.226 Atomic orbital electron populations 1.21878 0.88004 1.06504 1.05936 1.21611 0.92355 0.82625 0.74035 1.90717 1.72162 1.33347 1.52251 1.45905 1.06676 1.09686 1.74806 1.21238 0.80994 0.96238 1.02473 1.21339 0.80842 0.95669 1.02423 1.44155 1.04671 1.04645 1.84278 1.17589 0.91067 0.86299 0.97673 1.20530 1.00101 0.89921 1.07235 1.21163 0.93315 0.99307 1.06101 1.19509 0.91548 0.87073 1.01575 1.86018 1.37858 1.13394 1.88698 1.20069 0.91429 0.79915 0.94477 1.21376 0.94089 0.90609 1.53273 0.91687 1.25979 0.97329 1.02133 0.93539 1.70064 1.12517 1.24116 1.49769 0.85058 0.78377 0.77077 0.78419 1.18806 1.19458 1.19445 1.20406 1.00451 0.89229 1.04044 1.20606 0.92047 0.97758 1.06360 0.87549 0.88056 0.88063 0.74268 0.91564 0.91571 0.91186 0.91195 0.75533 0.84178 0.87462 0.98483 0.98476 0.91756 0.84793 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 10.39 71.23 0.74 -0.24 16 2 C 0.50 7.61 7.94 87.66 0.70 8.30 16 3 O -0.60 -15.58 17.10 -3.03 -0.05 -15.63 16 4 N -0.72 -7.69 5.56 -463.06 -2.57 -10.27 16 5 C 0.12 1.52 5.79 86.38 0.50 2.02 16 6 C 0.12 1.63 5.03 86.38 0.43 2.07 16 7 N -0.74 -13.01 5.74 -339.25 -1.95 -14.96 16 8 C 0.18 4.48 6.66 38.14 0.25 4.73 16 9 C -0.16 -4.67 9.31 22.39 0.21 -4.46 16 10 C -0.18 -7.13 9.03 22.35 0.20 -6.93 16 11 C 0.05 2.14 6.69 22.49 0.15 2.29 16 12 O -0.34 -18.13 10.12 -93.56 -0.95 -19.08 16 13 C 0.21 12.35 4.49 71.24 0.32 12.67 16 14 C -0.56 -33.41 9.43 25.60 0.24 -33.16 16 15 H 0.06 3.86 7.81 -2.91 -0.02 3.84 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 18 Si 0.99 44.03 29.54 68.60 2.03 46.06 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 C -0.12 -4.20 9.98 22.35 0.22 -3.98 16 23 C -0.15 -3.86 9.89 22.39 0.22 -3.64 16 24 H 0.11 0.02 7.91 -2.38 -0.02 0.00 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.42 1.88 8.31 -92.71 -0.77 1.11 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.91 7.96 -2.38 -0.02 0.89 16 31 H 0.07 0.90 7.94 -2.39 -0.02 0.88 16 32 H 0.41 5.68 8.49 -92.71 -0.79 4.89 16 33 H 0.14 3.39 6.73 -2.91 -0.02 3.37 16 34 H 0.11 4.69 6.29 -2.91 -0.02 4.67 16 35 H 0.00 -0.15 7.66 -2.39 -0.02 -0.17 16 36 H 0.00 -0.15 7.66 -2.39 -0.02 -0.17 16 37 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -77.46 336.50 0.96 -76.50 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -0.49 Total: 11.46 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.65 Total: -19.33 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -4.24 Total: -79.98 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.00 Total: -34.71 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.46 0.96 -76.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161661113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.077 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds