Wall clock time and date at job start Mon Mar 30 2020 23:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46983 * 2 1 4 4 O 1.45201 * 109.47159 * 119.99778 * 2 1 3 5 5 C 1.34232 * 117.00289 * 89.99920 * 4 2 1 6 6 O 1.20822 * 119.99643 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00065 * 180.02562 * 5 4 2 8 8 H 1.08992 * 109.47066 * 60.00574 * 7 5 4 9 9 C 1.52999 * 109.47173 * 300.00283 * 7 5 4 10 10 N 1.46507 * 109.46808 * 180.02562 * 7 5 4 11 11 C 1.38088 * 119.99609 * 204.99735 * 10 7 5 12 12 N 1.32261 * 119.90730 * 0.02562 * 11 10 7 13 13 C 1.31973 * 121.86769 * 179.97438 * 12 11 10 14 14 C 1.38685 * 121.44577 * 0.02562 * 13 12 11 15 15 C 1.38010 * 119.62719 * 0.23171 * 14 13 12 16 16 C 1.41011 * 118.27968 * 359.51306 * 15 14 13 17 17 C 1.41014 * 120.70784 * 180.26143 * 16 15 14 18 18 H 1.07991 * 120.00104 * 150.11489 * 17 16 15 19 19 C 1.39956 * 119.99827 * 330.11875 * 17 16 15 20 20 N 1.30862 * 120.00108 * 162.13434 * 19 17 16 21 21 Si 1.86800 * 119.99942 * 342.13307 * 19 17 16 22 22 H 1.48495 * 109.47129 * 95.38918 * 21 19 17 23 23 H 1.48498 * 109.47168 * 215.39380 * 21 19 17 24 24 H 1.48504 * 109.47079 * 335.39063 * 21 19 17 25 25 H 1.08996 * 109.46926 * 299.99699 * 1 2 3 26 26 H 1.08999 * 109.47022 * 60.00221 * 1 2 3 27 27 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47567 * 239.99903 * 2 1 3 29 29 H 1.09006 * 109.47024 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47061 * 299.99755 * 3 2 1 31 31 H 1.09000 * 109.46742 * 59.99985 * 3 2 1 32 32 H 1.09006 * 109.47188 * 180.02562 * 9 7 5 33 33 H 1.09009 * 109.47139 * 300.00142 * 9 7 5 34 34 H 1.08996 * 109.47544 * 59.99712 * 9 7 5 35 35 H 0.96997 * 119.99555 * 25.00297 * 10 7 5 36 36 H 1.07991 * 119.28029 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.19081 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.86199 * 179.74163 * 15 14 13 39 39 H 0.97002 * 120.00115 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 -2.0075 1.0853 6 8 1.9982 -2.5748 0.0412 7 6 2.7183 -2.7852 2.2748 8 1 2.0087 -2.6894 3.0966 9 6 4.0782 -2.2343 2.7083 10 7 2.8574 -4.1977 1.9113 11 6 2.7923 -5.1715 2.8882 12 7 2.6038 -4.8272 4.1512 13 6 2.5349 -5.7255 5.1155 14 6 2.6579 -7.0814 4.8513 15 6 2.8616 -7.5081 3.5547 16 6 2.9273 -6.5371 2.5343 17 6 3.1282 -6.9164 1.1911 18 1 2.7195 -6.3145 0.3931 19 6 3.8573 -8.0731 0.8922 20 7 3.7582 -8.6213 -0.2919 21 14 4.9718 -8.8345 2.1836 22 1 4.2412 -9.9154 2.8928 23 1 6.1769 -9.4003 1.5259 24 1 5.3832 -7.7927 3.1587 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 4.4409 -2.7971 3.5684 33 1 4.7878 -2.3301 1.8864 34 1 3.9751 -1.1834 2.9785 35 1 2.9953 -4.4486 0.9846 36 1 2.3794 -5.3977 6.1326 37 1 2.5987 -7.7991 5.6561 38 1 2.9642 -8.5588 3.3269 39 1 4.2638 -9.4228 -0.4992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163395717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:06 Heat of formation + Delta-G solvation = -61.425688 kcal Electronic energy + Delta-G solvation = -21703.864861 eV Core-core repulsion = 18418.156991 eV Total energy + Delta-G solvation = -3285.707870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52232 -38.79414 -36.94876 -35.12717 -33.90645 -33.23167 -31.26151 -30.94421 -28.09918 -27.45128 -25.36080 -24.65833 -22.50619 -21.40847 -20.79484 -20.05667 -17.87544 -17.45351 -16.91063 -16.24585 -15.95665 -15.30799 -14.90931 -14.34452 -14.02008 -13.80911 -13.56368 -13.26009 -13.17334 -13.11809 -12.49799 -12.39704 -12.28370 -12.14309 -11.99626 -11.90634 -11.80819 -11.37076 -11.29837 -11.01866 -10.79588 -10.55444 -10.29836 -10.07935 -9.89751 -9.46201 -9.26103 -8.25257 -8.17547 -6.95469 -6.83189 -4.38465 2.38600 2.53233 2.62279 2.76508 3.09280 3.19368 3.30567 3.96370 4.20473 4.57607 4.65128 4.74995 4.77947 5.01083 5.34071 5.34735 5.49710 5.52817 5.56352 5.61325 5.64950 5.75019 5.86026 6.00706 6.01231 6.10423 6.13236 6.38402 6.46214 6.51936 6.58274 6.79567 7.04108 7.30300 7.56050 7.76361 7.89250 8.05141 8.30738 8.35138 8.66959 8.75136 9.50625 10.06564 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.004821 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.293880 B = 5806.975684 C = 6513.222096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 C -0.148 4.148 4 O -0.351 6.351 5 C 0.456 3.544 6 O -0.500 6.500 7 C 0.177 3.823 8 H 0.117 0.883 9 C -0.154 4.154 10 N -0.711 5.711 11 C 0.323 3.677 12 N -0.527 5.527 13 C 0.001 3.999 14 C -0.168 4.168 15 C -0.200 4.200 16 C 0.021 3.979 17 C -0.441 4.441 18 H 0.092 0.908 19 C 0.085 3.915 20 N -0.807 5.807 21 Si 0.911 3.089 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.246 1.246 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.416 0.584 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 13.745 2.186 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.022 3.978 3 C -0.205 4.205 4 O -0.268 6.268 5 C 0.298 3.702 6 O -0.386 6.386 7 C 0.068 3.932 8 H 0.135 0.865 9 C -0.213 4.213 10 N -0.354 5.354 11 C 0.084 3.916 12 N -0.244 5.244 13 C -0.150 4.150 14 C -0.190 4.190 15 C -0.226 4.226 16 C 0.013 3.987 17 C -0.471 4.471 18 H 0.110 0.890 19 C -0.134 4.134 20 N -0.431 5.431 21 Si 0.738 3.262 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.170 1.170 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.256 0.744 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.338 14.420 1.964 14.615 hybrid contribution 0.483 -1.594 -0.311 1.695 sum -0.855 12.826 1.653 12.960 Atomic orbital electron populations 1.22205 0.94430 1.03251 1.02837 1.22706 0.94588 0.92992 0.87475 1.21875 1.02098 0.93560 1.02962 1.86571 1.77112 1.22294 1.40868 1.24296 0.74083 0.81201 0.90611 1.90660 1.47525 1.69728 1.30709 1.20028 0.98818 0.82384 0.91966 0.86531 1.22137 0.95575 1.00937 1.02654 1.43668 1.81829 1.00630 1.09225 1.18287 1.00427 0.86377 0.86541 1.66569 1.19159 1.39198 0.99518 1.21380 1.08844 0.88876 0.95946 1.21301 1.04839 0.96461 0.96402 1.21026 1.10639 0.97880 0.93018 1.18020 0.96329 0.89818 0.94519 1.19162 1.29154 1.07075 0.91685 0.88982 1.26093 0.96204 0.94958 0.96128 1.69707 1.34052 1.17273 1.22082 0.86290 0.78991 0.80070 0.80863 1.19687 1.21851 1.16951 0.91554 0.90882 0.91825 0.89770 0.91679 0.90576 0.91406 0.90284 0.92599 0.91485 0.74418 0.85793 0.88160 0.87457 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.55 37.16 0.35 -1.43 16 2 C 0.08 0.90 3.18 -26.73 -0.09 0.82 16 3 C -0.15 -1.25 9.57 37.16 0.36 -0.89 16 4 O -0.35 -4.97 9.78 -39.26 -0.38 -5.35 16 5 C 0.46 7.67 7.30 36.01 0.26 7.93 16 6 O -0.50 -9.76 15.06 -18.75 -0.28 -10.04 16 7 C 0.18 3.06 3.09 -69.08 -0.21 2.85 16 8 H 0.12 2.04 7.53 -51.93 -0.39 1.65 16 9 C -0.15 -2.32 9.43 37.16 0.35 -1.97 16 10 N -0.71 -15.02 5.00 -54.61 -0.27 -15.29 16 11 C 0.32 7.59 7.49 -155.03 -1.16 6.42 16 12 N -0.53 -11.73 9.17 -11.87 -0.11 -11.84 16 13 C 0.00 0.03 11.17 -17.33 -0.19 -0.17 16 14 C -0.17 -3.62 10.08 -39.50 -0.40 -4.02 16 15 C -0.20 -4.81 7.27 -38.62 -0.28 -5.09 16 16 C 0.02 0.52 5.13 -106.47 -0.55 -0.02 16 17 C -0.44 -11.71 8.93 -37.89 -0.34 -12.04 16 18 H 0.09 2.57 7.03 -52.49 -0.37 2.20 16 19 C 0.09 2.21 5.42 -17.32 -0.09 2.11 16 20 N -0.81 -21.38 13.93 55.55 0.77 -20.60 16 21 Si 0.91 20.72 24.53 -169.99 -4.17 16.55 16 22 H -0.27 -5.97 6.71 56.52 0.38 -5.59 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.25 -5.79 6.84 56.52 0.39 -5.40 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.08 7.16 -51.93 -0.37 0.71 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.07 0.84 8.11 -51.93 -0.42 0.41 16 35 H 0.42 9.25 6.08 -40.82 -0.25 9.00 16 36 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.11 2.56 4.80 -52.49 -0.25 2.31 16 39 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -28.78 326.01 -6.97 -35.75 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.45 Total: 11.40 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.39 Total: -47.73 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.67 Total: -15.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.17 Total: 16.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.78 -6.97 -35.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163395717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.676 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds