Wall clock time and date at job start Mon Mar 30 2020 23:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46983 * 2 1 4 4 O 1.45201 * 109.47159 * 119.99778 * 2 1 3 5 5 C 1.34232 * 117.00289 * 89.99920 * 4 2 1 6 6 O 1.20822 * 119.99643 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00065 * 180.02562 * 5 4 2 8 8 H 1.08992 * 109.47066 * 60.00574 * 7 5 4 9 9 C 1.52999 * 109.47173 * 300.00283 * 7 5 4 10 10 N 1.46507 * 109.46808 * 180.02562 * 7 5 4 11 11 C 1.38088 * 119.99609 * 204.99735 * 10 7 5 12 12 N 1.32261 * 119.90730 * 0.02562 * 11 10 7 13 13 C 1.31973 * 121.86769 * 179.97438 * 12 11 10 14 14 C 1.38685 * 121.44577 * 0.02562 * 13 12 11 15 15 C 1.38010 * 119.62719 * 0.23171 * 14 13 12 16 16 C 1.41011 * 118.27968 * 359.51306 * 15 14 13 17 17 C 1.41014 * 120.70784 * 180.26143 * 16 15 14 18 18 H 1.07991 * 120.00104 * 150.11489 * 17 16 15 19 19 C 1.39956 * 119.99827 * 330.11875 * 17 16 15 20 20 N 1.30862 * 120.00108 * 162.13434 * 19 17 16 21 21 Si 1.86800 * 119.99942 * 342.13307 * 19 17 16 22 22 H 1.48495 * 109.47129 * 95.38918 * 21 19 17 23 23 H 1.48498 * 109.47168 * 215.39380 * 21 19 17 24 24 H 1.48504 * 109.47079 * 335.39063 * 21 19 17 25 25 H 1.08996 * 109.46926 * 299.99699 * 1 2 3 26 26 H 1.08999 * 109.47022 * 60.00221 * 1 2 3 27 27 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47567 * 239.99903 * 2 1 3 29 29 H 1.09006 * 109.47024 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47061 * 299.99755 * 3 2 1 31 31 H 1.09000 * 109.46742 * 59.99985 * 3 2 1 32 32 H 1.09006 * 109.47188 * 180.02562 * 9 7 5 33 33 H 1.09009 * 109.47139 * 300.00142 * 9 7 5 34 34 H 1.08996 * 109.47544 * 59.99712 * 9 7 5 35 35 H 0.96997 * 119.99555 * 25.00297 * 10 7 5 36 36 H 1.07991 * 119.28029 * 180.02562 * 13 12 11 37 37 H 1.07996 * 120.19081 * 179.97438 * 14 13 12 38 38 H 1.07999 * 120.86199 * 179.74163 * 15 14 13 39 39 H 0.97002 * 120.00115 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2172 -2.0075 1.0853 6 8 1.9982 -2.5748 0.0412 7 6 2.7183 -2.7852 2.2748 8 1 2.0087 -2.6894 3.0966 9 6 4.0782 -2.2343 2.7083 10 7 2.8574 -4.1977 1.9113 11 6 2.7923 -5.1715 2.8882 12 7 2.6038 -4.8272 4.1512 13 6 2.5349 -5.7255 5.1155 14 6 2.6579 -7.0814 4.8513 15 6 2.8616 -7.5081 3.5547 16 6 2.9273 -6.5371 2.5343 17 6 3.1282 -6.9164 1.1911 18 1 2.7195 -6.3145 0.3931 19 6 3.8573 -8.0731 0.8922 20 7 3.7582 -8.6213 -0.2919 21 14 4.9718 -8.8345 2.1836 22 1 4.2412 -9.9154 2.8928 23 1 6.1769 -9.4003 1.5259 24 1 5.3832 -7.7927 3.1587 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 4.4409 -2.7971 3.5684 33 1 4.7878 -2.3301 1.8864 34 1 3.9751 -1.1834 2.9785 35 1 2.9953 -4.4486 0.9846 36 1 2.3794 -5.3977 6.1326 37 1 2.5987 -7.7991 5.6561 38 1 2.9642 -8.5588 3.3269 39 1 4.2638 -9.4228 -0.4992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163395717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:06 Heat of formation + Delta-G solvation = -78.183631 kcal Electronic energy + Delta-G solvation = -21704.591540 eV Core-core repulsion = 18418.156991 eV Total energy + Delta-G solvation = -3286.434549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.84169 -40.53343 -38.22787 -36.67718 -35.78927 -34.23233 -33.10591 -32.48537 -29.75499 -28.21761 -27.17056 -26.00881 -24.10262 -22.94113 -22.21754 -21.39234 -19.42082 -19.29394 -18.28507 -17.77931 -17.39985 -16.92376 -16.41366 -15.56652 -15.44885 -15.27069 -15.10584 -15.00269 -14.69833 -14.14338 -14.00215 -13.83410 -13.64939 -13.38369 -13.23303 -13.17636 -13.08005 -12.74519 -12.68838 -12.59178 -12.07313 -11.93586 -11.80257 -11.62266 -11.42636 -11.29906 -10.95407 -10.10532 -9.95966 -8.86562 -8.58471 -6.33477 0.73618 0.88981 1.03903 1.26170 1.38231 1.44084 1.48877 2.12090 2.59683 2.69095 3.54842 3.57906 3.79683 3.92227 4.09055 4.10592 4.12776 4.18177 4.36701 4.63665 4.64681 4.70034 4.72948 4.76372 4.81636 4.84448 4.87943 5.06128 5.09894 5.20602 5.21219 5.24921 5.42029 5.50837 5.73474 5.97427 6.15844 6.39751 6.52725 6.67332 6.76716 6.90446 7.70920 8.21587 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022265 B = 0.004821 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.293880 B = 5806.975684 C = 6513.222096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 C -0.140 4.140 4 O -0.344 6.344 5 C 0.464 3.536 6 O -0.535 6.535 7 C 0.173 3.827 8 H 0.120 0.880 9 C -0.143 4.143 10 N -0.717 5.717 11 C 0.317 3.683 12 N -0.529 5.529 13 C 0.021 3.979 14 C -0.178 4.178 15 C -0.201 4.201 16 C -0.010 4.010 17 C -0.469 4.469 18 H 0.057 0.943 19 C 0.048 3.952 20 N -0.852 5.852 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.280 1.280 24 H -0.257 1.257 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.406 0.594 36 H 0.168 0.832 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 15.415 4.867 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 C -0.197 4.197 4 O -0.260 6.260 5 C 0.307 3.693 6 O -0.424 6.424 7 C 0.066 3.934 8 H 0.137 0.863 9 C -0.202 4.202 10 N -0.356 5.356 11 C 0.078 3.922 12 N -0.247 5.247 13 C -0.132 4.132 14 C -0.200 4.200 15 C -0.227 4.227 16 C -0.018 4.018 17 C -0.501 4.501 18 H 0.075 0.925 19 C -0.166 4.166 20 N -0.479 5.479 21 Si 0.789 3.211 22 H -0.182 1.182 23 H -0.207 1.207 24 H -0.181 1.181 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.244 0.756 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.124 0.876 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.244 16.143 4.639 16.842 hybrid contribution 0.325 -1.903 -0.983 2.167 sum -0.918 14.240 3.657 14.730 Atomic orbital electron populations 1.22216 0.93472 1.01996 1.04756 1.23108 0.95535 0.94428 0.85805 1.21894 1.02150 0.91017 1.04669 1.86552 1.76667 1.20630 1.42152 1.24128 0.73347 0.82031 0.89780 1.90657 1.49136 1.70635 1.31947 1.20228 1.00354 0.80655 0.92163 0.86277 1.22053 0.93729 1.02469 1.01948 1.43805 1.81270 1.02104 1.08452 1.18461 0.99878 0.86414 0.87401 1.66743 1.19434 1.39489 0.99046 1.22234 1.04827 0.88748 0.97403 1.21691 1.04366 0.97659 0.96257 1.21270 1.09674 0.97747 0.94034 1.18181 0.98065 0.91209 0.94319 1.19040 1.31347 1.07926 0.91741 0.92470 1.26725 0.96927 0.95172 0.97750 1.69743 1.35917 1.18529 1.23675 0.85474 0.77791 0.79229 0.78594 1.18206 1.20714 1.18110 0.90270 0.88359 0.94603 0.91452 0.91632 0.88176 0.90345 0.91304 0.92871 0.88312 0.75585 0.81520 0.84358 0.87590 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.55 71.98 0.69 -2.63 16 2 C 0.07 1.46 3.18 30.60 0.10 1.56 16 3 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 4 O -0.34 -9.38 9.78 -51.44 -0.50 -9.88 16 5 C 0.46 15.73 7.30 71.24 0.52 16.25 16 6 O -0.53 -21.78 15.06 21.98 0.33 -21.45 16 7 C 0.17 5.97 3.09 44.24 0.14 6.10 16 8 H 0.12 4.05 7.53 -2.39 -0.02 4.03 16 9 C -0.14 -4.12 9.43 71.98 0.68 -3.44 16 10 N -0.72 -31.09 5.00 -326.70 -1.63 -32.72 16 11 C 0.32 14.91 7.49 134.06 1.00 15.92 16 12 N -0.53 -22.45 9.17 -191.46 -1.76 -24.21 16 13 C 0.02 0.79 11.17 84.78 0.95 1.74 16 14 C -0.18 -7.05 10.08 22.32 0.22 -6.82 16 15 C -0.20 -9.44 7.27 22.90 0.17 -9.28 16 16 C -0.01 -0.53 5.13 -21.06 -0.11 -0.64 16 17 C -0.47 -26.27 8.93 23.37 0.21 -26.07 16 18 H 0.06 3.47 7.03 -2.92 -0.02 3.45 16 19 C 0.05 2.60 5.42 85.25 0.46 3.06 16 20 N -0.85 -47.24 13.93 21.83 0.30 -46.94 16 21 Si 0.97 43.06 24.53 68.60 1.68 44.74 16 22 H -0.26 -10.75 6.71 99.48 0.67 -10.08 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -11.78 6.84 99.48 0.68 -11.10 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.75 7.16 -2.39 -0.02 1.73 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.10 2.20 8.11 -2.39 -0.02 2.18 16 35 H 0.41 19.25 6.08 -92.71 -0.56 18.69 16 36 H 0.17 4.98 8.06 -2.92 -0.02 4.96 16 37 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.11 4.94 4.80 -2.91 -0.01 4.93 16 39 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -64.58 326.01 4.57 -60.01 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.43 Total: 36.00 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.71 Total: -5.56 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -3.08 Total: -103.86 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.17 Total: -31.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.68 Total: 44.74 kcal Total: -64.58 4.57 -60.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163395717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.174 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds