Wall clock time and date at job start Mon Mar 30 2020 23:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 O 1.45198 * 109.47428 * 120.00267 * 2 1 3 5 5 C 1.34228 * 117.00579 * 89.99476 * 4 2 1 6 6 O 1.20830 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00367 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47074 * 60.00207 * 7 5 4 9 9 C 1.53002 * 109.47047 * 300.00218 * 7 5 4 10 10 N 1.46500 * 109.47020 * 180.02562 * 7 5 4 11 11 C 1.39724 * 119.99629 * 204.99933 * 10 7 5 12 12 C 1.39336 * 120.36281 * 0.02562 * 11 10 7 13 13 N 1.31985 * 121.20388 * 180.02562 * 12 11 10 14 14 C 1.31490 * 122.05845 * 359.97438 * 13 12 11 15 15 C 1.40763 * 120.56822 * 0.02969 * 14 13 12 16 16 C 1.41423 * 120.62353 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99791 * 23.36685 * 16 15 14 18 18 C 1.39934 * 119.99884 * 203.37356 * 16 15 14 19 19 N 1.30829 * 120.00159 * 17.33793 * 18 16 15 20 20 Si 1.86800 * 119.99761 * 197.33725 * 18 16 15 21 21 H 1.48501 * 109.46785 * 94.68713 * 20 18 16 22 22 H 1.48501 * 109.46894 * 214.68484 * 20 18 16 23 23 H 1.48496 * 109.47199 * 334.68989 * 20 18 16 24 24 C 1.38659 * 120.36230 * 179.72326 * 11 10 7 25 25 H 1.09002 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46819 * 300.00025 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00143 * 1 2 3 28 28 H 1.09004 * 109.47512 * 239.99949 * 2 1 3 29 29 H 1.09004 * 109.47330 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46895 * 300.00019 * 3 2 1 31 31 H 1.08997 * 109.47250 * 59.99662 * 3 2 1 32 32 H 1.09007 * 109.47122 * 60.00133 * 9 7 5 33 33 H 1.09001 * 109.47174 * 299.99927 * 9 7 5 34 34 H 1.08996 * 109.47100 * 179.97438 * 9 7 5 35 35 H 0.96998 * 120.00107 * 25.00358 * 10 7 5 36 36 H 1.08000 * 119.39634 * 359.97438 * 12 11 10 37 37 H 1.08013 * 119.71561 * 180.02562 * 14 13 12 38 38 H 0.96993 * 120.00178 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.92294 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0851 6 8 1.9981 -2.5749 0.0410 7 6 2.7183 -2.7854 2.2746 8 1 2.0088 -2.6895 3.0966 9 6 4.0783 -2.2345 2.7080 10 7 2.8573 -4.1977 1.9111 11 6 2.7915 -5.1832 2.8995 12 6 2.5933 -4.8311 4.2330 13 7 2.5289 -5.7482 5.1800 14 6 2.6468 -7.0313 4.9182 15 6 2.8494 -7.4770 3.5984 16 6 2.9769 -8.8568 3.3155 17 1 2.5607 -9.5876 3.9932 18 6 3.6424 -9.2750 2.1578 19 7 4.4292 -8.4468 1.5202 20 14 3.4072 -11.0160 1.5228 21 1 2.3374 -11.0269 0.4930 22 1 4.6767 -11.4997 0.9230 23 1 3.0206 -11.9051 2.6475 24 6 2.9164 -6.5226 2.5632 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.9752 -1.1835 2.9784 33 1 4.7878 -2.3303 1.8861 34 1 4.4406 -2.7967 3.5686 35 1 2.9952 -4.4487 0.9844 36 1 2.4913 -3.7888 4.4965 37 1 2.5877 -7.7496 5.7227 38 1 4.8902 -8.7366 0.7175 39 1 3.0655 -6.8257 1.5374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163402314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:13 Heat of formation + Delta-G solvation = -68.177729 kcal Electronic energy + Delta-G solvation = -21303.649709 eV Core-core repulsion = 18017.649048 eV Total energy + Delta-G solvation = -3286.000661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68768 -38.51686 -37.09591 -35.46862 -33.94567 -33.36549 -31.22447 -30.12205 -27.55205 -27.49326 -25.57429 -24.81510 -22.21056 -21.80965 -20.80185 -20.09290 -17.86278 -17.25644 -16.93548 -16.18459 -15.55955 -15.35529 -14.87724 -14.73992 -14.42556 -13.83217 -13.77976 -13.29735 -13.05293 -12.79214 -12.57830 -12.45516 -12.26466 -12.10248 -11.93822 -11.69482 -11.58391 -11.37702 -11.19444 -11.14090 -10.93174 -10.69144 -10.51754 -10.25695 -9.90987 -9.66321 -9.32581 -8.07811 -7.77548 -6.85759 -6.47126 -4.47229 2.20623 2.48356 2.73700 3.04790 3.08886 3.11106 3.24510 3.88498 4.09686 4.53624 4.58278 4.64445 4.66708 4.89566 5.18287 5.23450 5.25394 5.44232 5.50283 5.54931 5.75352 5.76510 5.78270 5.89498 5.91245 6.10726 6.31049 6.42289 6.51948 6.61136 6.88833 7.07522 7.14293 7.50950 7.67448 7.74918 7.96246 8.16327 8.39905 8.59847 8.75470 8.84263 9.73494 10.10151 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.003867 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.513585 B = 7238.877934 C = 7861.647059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 C -0.148 4.148 4 O -0.350 6.350 5 C 0.460 3.540 6 O -0.502 6.502 7 C 0.170 3.830 8 H 0.113 0.887 9 C -0.162 4.162 10 N -0.739 5.739 11 C 0.176 3.824 12 C -0.102 4.102 13 N -0.444 5.444 14 C -0.050 4.050 15 C 0.096 3.904 16 C -0.450 4.450 17 H 0.083 0.917 18 C 0.076 3.924 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.205 4.205 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.400 0.600 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.281 0.719 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 14.542 -4.706 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 C -0.206 4.206 4 O -0.267 6.267 5 C 0.302 3.698 6 O -0.389 6.389 7 C 0.061 3.939 8 H 0.130 0.870 9 C -0.221 4.221 10 N -0.376 5.376 11 C 0.076 3.924 12 C -0.261 4.261 13 N -0.151 5.151 14 C -0.215 4.215 15 C 0.091 3.909 16 C -0.479 4.479 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.184 1.184 24 C -0.235 4.235 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.707 14.874 -4.291 15.715 hybrid contribution 0.128 -1.132 -1.891 2.208 sum -2.579 13.741 -6.181 15.287 Atomic orbital electron populations 1.22210 0.94325 1.03246 1.02984 1.22727 0.94646 0.93035 0.87272 1.21881 1.02126 0.93462 1.03085 1.86569 1.77006 1.22138 1.41011 1.24142 0.73969 0.81260 0.90442 1.90641 1.47676 1.69830 1.30741 1.20143 0.98672 0.82732 0.92330 0.86980 1.22246 0.95536 1.01253 1.03023 1.44196 1.83351 1.00914 1.09147 1.18613 0.96251 0.88624 0.88927 1.21243 1.19957 0.97137 0.87726 1.66822 1.09207 1.02677 1.36357 1.22342 1.13294 0.90880 0.94966 1.18265 0.87731 0.93849 0.91064 1.19581 1.30753 0.92244 1.05372 0.89870 1.25967 0.92698 0.99889 0.95782 1.69825 1.18835 1.37007 1.15294 0.86256 0.78622 0.81844 0.79783 1.19319 1.20253 1.18387 1.21096 1.12951 0.89053 1.00396 0.91858 0.91445 0.90801 0.89807 0.91649 0.90499 0.91308 0.91161 0.92198 0.90084 0.76352 0.86660 0.85857 0.90779 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.55 37.15 0.35 -1.26 16 2 C 0.08 0.82 3.18 -26.73 -0.09 0.74 16 3 C -0.15 -1.12 9.57 37.16 0.36 -0.76 16 4 O -0.35 -4.50 9.78 -39.25 -0.38 -4.88 16 5 C 0.46 6.99 7.30 36.01 0.26 7.26 16 6 O -0.50 -8.89 15.06 -18.75 -0.28 -9.17 16 7 C 0.17 2.65 2.78 -69.08 -0.19 2.46 16 8 H 0.11 1.70 6.50 -51.93 -0.34 1.36 16 9 C -0.16 -2.20 9.37 37.16 0.35 -1.85 16 10 N -0.74 -14.32 5.13 -53.23 -0.27 -14.60 16 11 C 0.18 4.06 6.65 -83.70 -0.56 3.50 16 12 C -0.10 -2.34 10.05 -17.08 -0.17 -2.51 16 13 N -0.44 -11.05 10.33 -12.37 -0.13 -11.18 16 14 C -0.05 -1.28 10.97 -16.74 -0.18 -1.46 16 15 C 0.10 2.56 5.59 -106.70 -0.60 1.96 16 16 C -0.45 -11.69 9.08 -37.74 -0.34 -12.04 16 17 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16 18 C 0.08 1.86 5.18 -17.34 -0.09 1.77 16 19 N -0.79 -19.92 10.92 55.55 0.61 -19.31 16 20 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.20 -5.29 8.67 -38.39 -0.33 -5.62 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.97 7.16 -51.93 -0.37 0.60 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 35 H 0.40 7.94 7.81 -40.82 -0.32 7.62 16 36 H 0.12 2.31 6.11 -52.49 -0.32 1.99 16 37 H 0.12 2.93 8.06 -52.48 -0.42 2.51 16 38 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 39 H 0.13 3.36 6.20 -52.48 -0.33 3.04 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -29.09 330.95 -7.16 -36.25 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.43 Total: 12.38 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.23 Total: -7.81 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.21 Total: -45.08 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.67 Total: -14.05 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.09 -7.16 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163402314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.929 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds