Wall clock time and date at job start Mon Mar 30 2020 23:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47305 * 2 1 4 4 O 1.45198 * 109.47428 * 120.00267 * 2 1 3 5 5 C 1.34228 * 117.00579 * 89.99476 * 4 2 1 6 6 O 1.20830 * 119.99775 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00367 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.47074 * 60.00207 * 7 5 4 9 9 C 1.53002 * 109.47047 * 300.00218 * 7 5 4 10 10 N 1.46500 * 109.47020 * 180.02562 * 7 5 4 11 11 C 1.39724 * 119.99629 * 204.99933 * 10 7 5 12 12 C 1.39336 * 120.36281 * 0.02562 * 11 10 7 13 13 N 1.31985 * 121.20388 * 180.02562 * 12 11 10 14 14 C 1.31490 * 122.05845 * 359.97438 * 13 12 11 15 15 C 1.40763 * 120.56822 * 0.02969 * 14 13 12 16 16 C 1.41423 * 120.62353 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99791 * 23.36685 * 16 15 14 18 18 C 1.39934 * 119.99884 * 203.37356 * 16 15 14 19 19 N 1.30829 * 120.00159 * 17.33793 * 18 16 15 20 20 Si 1.86800 * 119.99761 * 197.33725 * 18 16 15 21 21 H 1.48501 * 109.46785 * 94.68713 * 20 18 16 22 22 H 1.48501 * 109.46894 * 214.68484 * 20 18 16 23 23 H 1.48496 * 109.47199 * 334.68989 * 20 18 16 24 24 C 1.38659 * 120.36230 * 179.72326 * 11 10 7 25 25 H 1.09002 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46819 * 300.00025 * 1 2 3 27 27 H 1.09000 * 109.47160 * 60.00143 * 1 2 3 28 28 H 1.09004 * 109.47512 * 239.99949 * 2 1 3 29 29 H 1.09004 * 109.47330 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46895 * 300.00019 * 3 2 1 31 31 H 1.08997 * 109.47250 * 59.99662 * 3 2 1 32 32 H 1.09007 * 109.47122 * 60.00133 * 9 7 5 33 33 H 1.09001 * 109.47174 * 299.99927 * 9 7 5 34 34 H 1.08996 * 109.47100 * 179.97438 * 9 7 5 35 35 H 0.96998 * 120.00107 * 25.00358 * 10 7 5 36 36 H 1.08000 * 119.39634 * 359.97438 * 12 11 10 37 37 H 1.08013 * 119.71561 * 180.02562 * 14 13 12 38 38 H 0.96993 * 120.00178 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.92294 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 -2.0075 1.0851 6 8 1.9981 -2.5749 0.0410 7 6 2.7183 -2.7854 2.2746 8 1 2.0088 -2.6895 3.0966 9 6 4.0783 -2.2345 2.7080 10 7 2.8573 -4.1977 1.9111 11 6 2.7915 -5.1832 2.8995 12 6 2.5933 -4.8311 4.2330 13 7 2.5289 -5.7482 5.1800 14 6 2.6468 -7.0313 4.9182 15 6 2.8494 -7.4770 3.5984 16 6 2.9769 -8.8568 3.3155 17 1 2.5607 -9.5876 3.9932 18 6 3.6424 -9.2750 2.1578 19 7 4.4292 -8.4468 1.5202 20 14 3.4072 -11.0160 1.5228 21 1 2.3374 -11.0269 0.4930 22 1 4.6767 -11.4997 0.9230 23 1 3.0206 -11.9051 2.6475 24 6 2.9164 -6.5226 2.5632 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.9752 -1.1835 2.9784 33 1 4.7878 -2.3303 1.8861 34 1 4.4406 -2.7967 3.5686 35 1 2.9952 -4.4487 0.9844 36 1 2.4913 -3.7888 4.4965 37 1 2.5877 -7.7496 5.7227 38 1 4.8902 -8.7366 0.7175 39 1 3.0655 -6.8257 1.5374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163402314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:13 Heat of formation + Delta-G solvation = -85.082660 kcal Electronic energy + Delta-G solvation = -21304.382761 eV Core-core repulsion = 18017.649048 eV Total energy + Delta-G solvation = -3286.733714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87293 -40.30643 -38.30475 -36.97237 -35.82207 -34.27390 -32.76721 -31.97764 -29.13498 -28.22277 -27.49040 -26.00800 -23.91297 -23.25220 -22.16396 -21.42890 -19.26035 -19.00471 -18.19686 -17.51025 -17.24882 -16.99291 -16.49852 -16.12009 -15.52666 -15.25936 -15.05886 -14.61684 -14.45858 -14.15467 -13.79616 -13.51006 -13.39232 -13.29163 -13.22297 -13.17442 -13.05676 -12.81179 -12.75065 -12.61102 -12.14692 -11.94544 -11.76004 -11.64856 -11.47292 -11.31565 -11.16753 -10.02262 -9.72960 -8.70929 -8.22963 -6.44430 0.91199 0.99469 1.16861 1.39482 1.39863 1.53506 1.54809 2.19549 2.57809 2.76912 3.49477 3.77494 3.78948 3.90276 3.93851 4.05994 4.11733 4.29300 4.58395 4.63310 4.69003 4.72520 4.73722 4.82135 4.84298 4.86606 4.95497 5.09647 5.16279 5.19877 5.21801 5.27018 5.40771 5.66161 5.82294 6.00105 6.28589 6.52849 6.69475 6.71889 6.82689 6.95731 7.80022 8.26816 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.003867 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.513585 B = 7238.877934 C = 7861.647059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 C -0.142 4.142 4 O -0.344 6.344 5 C 0.468 3.532 6 O -0.533 6.533 7 C 0.164 3.836 8 H 0.123 0.877 9 C -0.153 4.153 10 N -0.736 5.736 11 C 0.188 3.812 12 C -0.102 4.102 13 N -0.450 5.450 14 C -0.074 4.074 15 C 0.073 3.927 16 C -0.481 4.481 17 H 0.086 0.914 18 C 0.036 3.964 19 N -0.814 5.814 20 Si 0.986 3.014 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.254 1.254 24 C -0.233 4.233 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.289 0.711 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 16.118 -5.103 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 C -0.199 4.199 4 O -0.260 6.260 5 C 0.311 3.689 6 O -0.422 6.422 7 C 0.057 3.943 8 H 0.141 0.859 9 C -0.212 4.212 10 N -0.371 5.371 11 C 0.085 3.915 12 C -0.262 4.262 13 N -0.157 5.157 14 C -0.238 4.238 15 C 0.068 3.932 16 C -0.510 4.510 17 H 0.104 0.896 18 C -0.181 4.181 19 N -0.439 5.439 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.177 1.177 24 C -0.264 4.264 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.100 0.900 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.896 16.504 -4.674 17.396 hybrid contribution 0.174 -1.414 -1.810 2.304 sum -2.722 15.090 -6.484 16.648 Atomic orbital electron populations 1.22222 0.93469 1.02116 1.04719 1.23100 0.95482 0.94327 0.85761 1.21901 1.02166 0.91189 1.04637 1.86553 1.76594 1.20633 1.42233 1.23913 0.73329 0.82012 0.89608 1.90639 1.49121 1.70617 1.31797 1.20393 1.00318 0.80716 0.92907 0.85931 1.22183 0.93820 1.02854 1.02335 1.44256 1.82389 1.02165 1.08264 1.18604 0.94524 0.88501 0.89846 1.21747 1.18779 0.98316 0.87331 1.66847 1.09212 1.02648 1.36991 1.22471 1.14829 0.91518 0.94983 1.18575 0.88249 0.94657 0.91745 1.19864 1.31996 0.92356 1.06827 0.89607 1.26835 0.91707 1.04214 0.95297 1.69878 1.19199 1.39076 1.15720 0.85126 0.78756 0.76374 0.79094 1.19005 1.19229 1.17732 1.21062 1.15195 0.90497 0.99606 0.94352 0.90407 0.88429 0.91184 0.91617 0.88220 0.90459 0.87951 0.92433 0.91188 0.76789 0.83377 0.85091 0.90020 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.55 71.98 0.69 -2.18 16 2 C 0.07 1.30 3.18 30.59 0.10 1.40 16 3 C -0.14 -1.71 9.57 71.98 0.69 -1.02 16 4 O -0.34 -8.16 9.78 -51.39 -0.50 -8.66 16 5 C 0.47 13.72 7.30 71.24 0.52 14.24 16 6 O -0.53 -18.79 15.06 21.95 0.33 -18.46 16 7 C 0.16 4.87 2.78 44.25 0.12 5.00 16 8 H 0.12 3.43 6.50 -2.39 -0.02 3.41 16 9 C -0.15 -3.85 9.37 71.98 0.67 -3.17 16 10 N -0.74 -28.41 5.13 -322.31 -1.65 -30.06 16 11 C 0.19 8.70 6.65 38.25 0.25 8.96 16 12 C -0.10 -4.61 10.05 84.93 0.85 -3.75 16 13 N -0.45 -22.38 10.33 -193.05 -1.99 -24.37 16 14 C -0.07 -3.88 10.97 85.36 0.94 -2.94 16 15 C 0.07 4.00 5.59 -21.21 -0.12 3.88 16 16 C -0.48 -25.69 9.08 23.47 0.21 -25.48 16 17 H 0.09 4.36 7.90 -2.91 -0.02 4.34 16 18 C 0.04 1.79 5.18 85.25 0.44 2.23 16 19 N -0.81 -42.13 10.92 21.82 0.24 -41.90 16 20 Si 0.99 37.71 29.59 68.60 2.03 39.74 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 24 C -0.23 -12.39 8.67 23.04 0.20 -12.19 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.56 7.16 -2.38 -0.02 1.54 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.93 8.11 -2.38 -0.02 1.91 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.95 7.74 -2.39 -0.02 1.93 16 35 H 0.40 15.98 7.81 -92.71 -0.72 15.26 16 36 H 0.15 5.60 6.11 -2.91 -0.02 5.58 16 37 H 0.13 6.40 8.06 -2.90 -0.02 6.38 16 38 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 39 H 0.11 6.12 6.20 -2.91 -0.02 6.11 16 Total: -1.00 -63.91 330.95 4.36 -59.55 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.34 Total: 39.20 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 5.57 Total: -15.04 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -3.41 Total: -96.33 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.17 Total: -27.13 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -63.91 4.36 -59.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163402314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.536 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds