Wall clock time and date at job start Mon Mar 30 2020 23:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47439 * 2 1 4 4 O 1.45207 * 109.46923 * 119.99715 * 2 1 3 5 5 C 1.34224 * 116.99906 * 89.99598 * 4 2 1 6 6 O 1.20832 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00017 * 180.02562 * 5 4 2 8 8 H 1.08998 * 109.46888 * 60.00466 * 7 5 4 9 9 C 1.53001 * 109.47074 * 300.00266 * 7 5 4 10 10 N 1.46504 * 109.47286 * 180.02562 * 7 5 4 11 11 C 1.38820 * 120.00269 * 204.99974 * 10 7 5 12 12 C 1.39799 * 119.57918 * 359.97438 * 11 10 7 13 13 C 1.38604 * 119.48846 * 179.97438 * 12 11 10 14 14 C 1.38388 * 118.67866 * 0.25056 * 13 12 11 15 15 C 1.40553 * 119.15049 * 359.48922 * 14 13 12 16 16 C 1.41321 * 119.78834 * 180.25016 * 15 14 13 17 17 H 1.08003 * 119.99497 * 353.95426 * 16 15 14 18 18 C 1.40016 * 120.00201 * 173.95383 * 16 15 14 19 19 N 1.30741 * 120.00273 * 6.29033 * 18 16 15 20 20 Si 1.86808 * 119.99985 * 186.28481 * 18 16 15 21 21 H 1.48500 * 109.46547 * 94.98765 * 20 18 16 22 22 H 1.48497 * 109.47170 * 214.98750 * 20 18 16 23 23 H 1.48497 * 109.46999 * 334.98916 * 20 18 16 24 24 N 1.31952 * 119.58739 * 179.97438 * 11 10 7 25 25 H 1.08997 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47208 * 300.00376 * 1 2 3 27 27 H 1.09004 * 109.46271 * 60.00130 * 1 2 3 28 28 H 1.08994 * 109.47312 * 239.99469 * 2 1 3 29 29 H 1.09003 * 109.47244 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47212 * 300.00024 * 3 2 1 31 31 H 1.09004 * 109.47228 * 59.99636 * 3 2 1 32 32 H 1.09003 * 109.47060 * 179.97438 * 9 7 5 33 33 H 1.09006 * 109.47135 * 299.99911 * 9 7 5 34 34 H 1.08994 * 109.47133 * 59.99803 * 9 7 5 35 35 H 0.97001 * 119.99716 * 24.99887 * 10 7 5 36 36 H 1.08000 * 120.25739 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.65933 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.42208 * 179.74582 * 14 13 12 39 39 H 0.97006 * 120.00104 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2170 -2.0075 1.0853 6 8 1.9981 -2.5749 0.0412 7 6 2.7181 -2.7853 2.2749 8 1 2.0085 -2.6894 3.0967 9 6 4.0781 -2.2344 2.7083 10 7 2.8571 -4.1977 1.9115 11 6 2.7916 -5.1768 2.8934 12 6 2.5932 -4.8051 4.2264 13 6 2.5275 -5.7843 5.2052 14 6 2.6667 -7.1090 4.8298 15 6 2.8586 -7.4194 3.4725 16 6 2.9971 -8.7680 3.0734 17 1 3.0534 -9.5483 3.8180 18 6 3.0613 -9.0925 1.7129 19 7 3.1172 -8.1427 0.8162 20 14 3.0673 -10.8827 1.1790 21 1 1.6821 -11.3059 0.8514 22 1 3.9292 -11.0387 -0.0201 23 1 3.5951 -11.7262 2.2812 24 7 2.9174 -6.4465 2.5569 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 4.4403 -2.7967 3.5690 33 1 4.7876 -2.3303 1.8864 34 1 3.9750 -1.1835 2.9786 35 1 2.9950 -4.4487 0.9847 36 1 2.4910 -3.7631 4.4914 37 1 2.3752 -5.5184 6.2408 38 1 2.6243 -7.8944 5.5698 39 1 3.1621 -8.3676 -0.1264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163402643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:10 Heat of formation + Delta-G solvation = -52.849266 kcal Electronic energy + Delta-G solvation = -21405.267309 eV Core-core repulsion = 18119.931340 eV Total energy + Delta-G solvation = -3285.335969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61755 -38.36976 -36.99878 -35.34551 -33.46480 -33.17324 -31.05036 -30.04042 -28.04021 -27.50990 -25.47917 -24.75915 -22.12021 -21.54702 -20.75814 -19.90625 -17.83595 -17.39117 -16.87216 -16.07739 -15.62450 -14.99772 -14.71430 -14.37421 -14.35422 -13.79469 -13.61949 -13.22663 -12.98879 -12.74234 -12.53993 -12.41506 -12.19293 -12.02103 -11.93033 -11.85654 -11.43412 -11.17602 -11.09000 -10.97586 -10.65015 -10.61254 -10.42872 -10.15697 -9.91953 -9.53613 -8.95634 -7.93453 -7.50946 -6.59180 -6.32334 -4.46845 2.28504 2.53117 2.88140 3.13373 3.16750 3.23010 3.29924 4.00219 4.12332 4.58306 4.64051 4.71232 4.83679 4.94473 5.23721 5.29191 5.29477 5.47976 5.54853 5.59778 5.78730 5.81496 5.93854 5.95696 6.04434 6.14061 6.32407 6.47363 6.55091 6.83089 6.85899 6.90604 7.25376 7.56452 7.75226 7.82935 7.89705 8.16924 8.32239 8.65339 8.80042 9.09814 10.24011 10.40718 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.004090 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.825107 B = 6843.741813 C = 7635.122473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 C -0.148 4.148 4 O -0.351 6.351 5 C 0.458 3.542 6 O -0.497 6.497 7 C 0.176 3.824 8 H 0.113 0.887 9 C -0.161 4.161 10 N -0.724 5.724 11 C 0.415 3.585 12 C -0.371 4.371 13 C -0.030 4.030 14 C -0.314 4.314 15 C 0.292 3.708 16 C -0.433 4.433 17 H 0.084 0.916 18 C 0.070 3.930 19 N -0.713 5.713 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 N -0.529 5.529 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 15.101 -1.282 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 C -0.205 4.205 4 O -0.268 6.268 5 C 0.300 3.700 6 O -0.383 6.383 7 C 0.067 3.933 8 H 0.131 0.869 9 C -0.220 4.220 10 N -0.364 5.364 11 C 0.176 3.824 12 C -0.397 4.397 13 C -0.055 4.055 14 C -0.337 4.337 15 C 0.166 3.834 16 C -0.465 4.465 17 H 0.102 0.898 18 C -0.155 4.155 19 N -0.334 5.334 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.186 1.186 24 N -0.250 5.250 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.443 14.893 -2.599 15.186 hybrid contribution -0.241 -0.607 0.092 0.660 sum -1.683 14.285 -2.507 14.601 Atomic orbital electron populations 1.22212 0.94363 1.03281 1.02912 1.22719 0.94626 0.92996 0.87346 1.21878 1.02109 0.93498 1.03032 1.86561 1.77127 1.22160 1.40996 1.24105 0.74195 0.81237 0.90487 1.90667 1.47308 1.69717 1.30627 1.20081 0.98697 0.82246 0.92290 0.86934 1.22246 0.95603 1.01151 1.03001 1.43950 1.82048 1.00617 1.09762 1.18377 0.90096 0.88503 0.85442 1.20621 1.28316 0.97809 0.92985 1.20589 0.95141 0.93133 0.96594 1.21550 1.19686 0.95171 0.97331 1.18199 0.86695 0.92039 0.86491 1.19599 1.42892 0.91802 0.92234 0.89779 1.26062 0.93608 0.98882 0.96948 1.70148 1.28449 1.33195 1.01600 0.86355 0.78906 0.82832 0.78933 1.19572 1.20229 1.18552 1.68172 1.24939 0.96235 1.35629 0.91812 0.91505 0.90827 0.89762 0.91660 0.90519 0.91367 0.90137 0.92159 0.91192 0.75733 0.88982 0.88809 0.88624 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 9.55 37.16 0.35 -1.34 16 2 C 0.08 0.86 3.18 -26.73 -0.09 0.77 16 3 C -0.15 -1.16 9.57 37.15 0.36 -0.80 16 4 O -0.35 -4.67 9.78 -39.24 -0.38 -5.06 16 5 C 0.46 7.33 7.30 36.01 0.26 7.59 16 6 O -0.50 -9.38 15.06 -18.76 -0.28 -9.66 16 7 C 0.18 2.88 2.77 -69.08 -0.19 2.69 16 8 H 0.11 1.77 6.44 -51.93 -0.33 1.43 16 9 C -0.16 -2.23 9.33 37.16 0.35 -1.89 16 10 N -0.72 -15.28 5.11 -55.03 -0.28 -15.56 16 11 C 0.42 10.20 7.63 -155.33 -1.18 9.02 16 12 C -0.37 -8.36 8.84 -38.86 -0.34 -8.70 16 13 C -0.03 -0.69 10.15 -39.39 -0.40 -1.09 16 14 C -0.31 -7.92 9.83 -38.65 -0.38 -8.30 16 15 C 0.29 8.19 6.54 -85.00 -0.56 7.63 16 16 C -0.43 -11.84 9.13 -37.74 -0.34 -12.18 16 17 H 0.08 2.15 7.85 -52.48 -0.41 1.74 16 18 C 0.07 1.83 5.49 -17.35 -0.10 1.74 16 19 N -0.71 -19.43 11.49 55.55 0.64 -18.79 16 20 Si 0.91 19.02 29.56 -169.99 -5.03 14.00 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 24 N -0.53 -14.83 7.92 -10.33 -0.08 -14.91 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.20 7.64 -51.93 -0.40 0.80 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.41 9.15 7.91 -40.82 -0.32 8.82 16 36 H 0.09 1.78 6.04 -52.49 -0.32 1.46 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 39 H 0.27 6.75 8.29 -40.82 -0.34 6.41 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -30.98 332.11 -8.19 -39.17 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.52 Total: 10.65 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.26 Total: -4.85 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.27 Total: -49.26 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.67 Total: -14.71 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.98 -8.19 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163402643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.680 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds