Wall clock time and date at job start Mon Mar 30 2020 23:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47439 * 2 1 4 4 O 1.45207 * 109.46923 * 119.99715 * 2 1 3 5 5 C 1.34224 * 116.99906 * 89.99598 * 4 2 1 6 6 O 1.20832 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00017 * 180.02562 * 5 4 2 8 8 H 1.08998 * 109.46888 * 60.00466 * 7 5 4 9 9 C 1.53001 * 109.47074 * 300.00266 * 7 5 4 10 10 N 1.46504 * 109.47286 * 180.02562 * 7 5 4 11 11 C 1.38820 * 120.00269 * 204.99974 * 10 7 5 12 12 C 1.39799 * 119.57918 * 359.97438 * 11 10 7 13 13 C 1.38604 * 119.48846 * 179.97438 * 12 11 10 14 14 C 1.38388 * 118.67866 * 0.25056 * 13 12 11 15 15 C 1.40553 * 119.15049 * 359.48922 * 14 13 12 16 16 C 1.41321 * 119.78834 * 180.25016 * 15 14 13 17 17 H 1.08003 * 119.99497 * 353.95426 * 16 15 14 18 18 C 1.40016 * 120.00201 * 173.95383 * 16 15 14 19 19 N 1.30741 * 120.00273 * 6.29033 * 18 16 15 20 20 Si 1.86808 * 119.99985 * 186.28481 * 18 16 15 21 21 H 1.48500 * 109.46547 * 94.98765 * 20 18 16 22 22 H 1.48497 * 109.47170 * 214.98750 * 20 18 16 23 23 H 1.48497 * 109.46999 * 334.98916 * 20 18 16 24 24 N 1.31952 * 119.58739 * 179.97438 * 11 10 7 25 25 H 1.08997 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47208 * 300.00376 * 1 2 3 27 27 H 1.09004 * 109.46271 * 60.00130 * 1 2 3 28 28 H 1.08994 * 109.47312 * 239.99469 * 2 1 3 29 29 H 1.09003 * 109.47244 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47212 * 300.00024 * 3 2 1 31 31 H 1.09004 * 109.47228 * 59.99636 * 3 2 1 32 32 H 1.09003 * 109.47060 * 179.97438 * 9 7 5 33 33 H 1.09006 * 109.47135 * 299.99911 * 9 7 5 34 34 H 1.08994 * 109.47133 * 59.99803 * 9 7 5 35 35 H 0.97001 * 119.99716 * 24.99887 * 10 7 5 36 36 H 1.08000 * 120.25739 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.65933 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.42208 * 179.74582 * 14 13 12 39 39 H 0.97006 * 120.00104 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2170 -2.0075 1.0853 6 8 1.9981 -2.5749 0.0412 7 6 2.7181 -2.7853 2.2749 8 1 2.0085 -2.6894 3.0967 9 6 4.0781 -2.2344 2.7083 10 7 2.8571 -4.1977 1.9115 11 6 2.7916 -5.1768 2.8934 12 6 2.5932 -4.8051 4.2264 13 6 2.5275 -5.7843 5.2052 14 6 2.6667 -7.1090 4.8298 15 6 2.8586 -7.4194 3.4725 16 6 2.9971 -8.7680 3.0734 17 1 3.0534 -9.5483 3.8180 18 6 3.0613 -9.0925 1.7129 19 7 3.1172 -8.1427 0.8162 20 14 3.0673 -10.8827 1.1790 21 1 1.6821 -11.3059 0.8514 22 1 3.9292 -11.0387 -0.0201 23 1 3.5951 -11.7262 2.2812 24 7 2.9174 -6.4465 2.5569 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 4.4403 -2.7967 3.5690 33 1 4.7876 -2.3303 1.8864 34 1 3.9750 -1.1835 2.9786 35 1 2.9950 -4.4487 0.9847 36 1 2.4910 -3.7631 4.4914 37 1 2.3752 -5.5184 6.2408 38 1 2.6243 -7.8944 5.5698 39 1 3.1621 -8.3676 -0.1264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163402643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:09 Heat of formation + Delta-G solvation = -70.725251 kcal Electronic energy + Delta-G solvation = -21406.042470 eV Core-core repulsion = 18119.931340 eV Total energy + Delta-G solvation = -3286.111130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.85812 -40.15914 -38.25717 -36.91012 -35.23846 -34.20957 -32.71285 -31.85249 -29.74995 -28.21853 -27.35951 -26.02051 -23.53311 -23.29597 -22.06080 -21.35057 -19.30134 -19.17777 -18.18226 -17.37834 -17.24502 -16.53357 -16.32908 -15.96375 -15.45296 -15.21748 -15.09671 -14.62897 -14.42690 -14.14211 -13.70611 -13.65554 -13.35205 -13.22838 -13.16231 -12.91260 -12.75670 -12.73046 -12.68196 -12.56485 -12.15296 -11.93902 -11.72844 -11.63764 -11.44222 -11.34065 -10.75213 -9.86256 -9.44893 -8.40758 -8.23961 -6.48025 1.00949 1.04529 1.30567 1.40537 1.42074 1.55162 1.57653 2.24382 2.55743 2.91575 3.50987 3.79183 3.90790 3.94713 3.97863 4.12296 4.15372 4.40366 4.62128 4.64152 4.72652 4.73672 4.83011 4.84824 4.85585 4.96233 5.01759 5.09703 5.10722 5.20496 5.23015 5.33598 5.41309 5.70215 5.95962 6.03291 6.20857 6.45820 6.60792 6.77096 6.88833 7.15895 8.32673 8.50521 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.004090 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.825107 B = 6843.741813 C = 7635.122473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.343 6.343 5 C 0.466 3.534 6 O -0.533 6.533 7 C 0.171 3.829 8 H 0.126 0.874 9 C -0.151 4.151 10 N -0.726 5.726 11 C 0.397 3.603 12 C -0.362 4.362 13 C -0.027 4.027 14 C -0.339 4.339 15 C 0.259 3.741 16 C -0.472 4.472 17 H 0.089 0.911 18 C 0.025 3.975 19 N -0.755 5.755 20 Si 0.986 3.014 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.253 1.253 24 N -0.568 5.568 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.394 0.606 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 16.973 -0.472 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 C -0.198 4.198 4 O -0.259 6.259 5 C 0.309 3.691 6 O -0.422 6.422 7 C 0.063 3.937 8 H 0.143 0.857 9 C -0.210 4.210 10 N -0.364 5.364 11 C 0.158 3.842 12 C -0.387 4.387 13 C -0.051 4.051 14 C -0.362 4.362 15 C 0.132 3.868 16 C -0.504 4.504 17 H 0.107 0.893 18 C -0.197 4.197 19 N -0.377 5.377 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.176 1.176 24 N -0.290 5.290 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.229 0.771 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.674 16.837 -1.760 17.012 hybrid contribution -0.207 -0.952 -0.126 0.982 sum -1.881 15.885 -1.885 16.107 Atomic orbital electron populations 1.22223 0.93504 1.02017 1.04766 1.23103 0.95479 0.94391 0.85770 1.21896 1.02177 0.91034 1.04672 1.86545 1.76663 1.20491 1.42174 1.23956 0.73411 0.82045 0.89670 1.90663 1.48994 1.70635 1.31922 1.20375 1.00583 0.79948 0.92767 0.85700 1.22179 0.93563 1.02905 1.02335 1.44110 1.81468 1.02160 1.08619 1.18797 0.89977 0.88303 0.87149 1.21013 1.26078 0.99725 0.91909 1.21047 0.93263 0.92048 0.98714 1.21726 1.21055 0.96895 0.96566 1.18673 0.87488 0.92683 0.87933 1.19959 1.44798 0.92201 0.93415 0.89316 1.26991 0.92482 1.03752 0.96433 1.70270 1.29790 1.35693 1.01977 0.85147 0.79005 0.76574 0.78623 1.19118 1.19469 1.17595 1.68109 1.26367 0.97759 1.36785 0.94563 0.90253 0.88425 0.91382 0.91581 0.88235 0.90337 0.90850 0.92706 0.87717 0.77126 0.85310 0.84682 0.87743 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.55 71.98 0.69 -2.38 16 2 C 0.07 1.37 3.18 30.59 0.10 1.46 16 3 C -0.14 -1.79 9.57 71.98 0.69 -1.10 16 4 O -0.34 -8.52 9.78 -51.35 -0.50 -9.02 16 5 C 0.47 14.64 7.30 71.24 0.52 15.16 16 6 O -0.53 -20.55 15.06 21.94 0.33 -20.22 16 7 C 0.17 5.38 2.77 44.25 0.12 5.51 16 8 H 0.13 3.63 6.44 -2.39 -0.02 3.61 16 9 C -0.15 -3.87 9.33 71.98 0.67 -3.20 16 10 N -0.73 -31.02 5.11 -328.01 -1.68 -32.70 16 11 C 0.40 19.71 7.63 133.42 1.02 20.73 16 12 C -0.36 -15.68 8.84 22.74 0.20 -15.48 16 13 C -0.03 -1.16 10.15 22.39 0.23 -0.94 16 14 C -0.34 -17.21 9.83 22.87 0.22 -16.98 16 15 C 0.26 14.98 6.54 40.18 0.26 15.24 16 16 C -0.47 -26.69 9.13 23.46 0.21 -26.47 16 17 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 18 C 0.02 1.33 5.49 85.29 0.47 1.80 16 19 N -0.76 -42.87 11.49 21.83 0.25 -42.62 16 20 Si 0.99 39.95 29.56 68.60 2.03 41.98 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 24 N -0.57 -32.95 7.92 -186.58 -1.48 -34.42 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.63 7.16 -2.39 -0.02 1.61 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.07 2.01 7.64 -2.39 -0.02 1.99 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 35 H 0.39 18.51 7.91 -92.71 -0.73 17.78 16 36 H 0.13 4.54 6.04 -2.91 -0.02 4.52 16 37 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 39 H 0.27 14.24 8.29 -92.70 -0.77 13.47 16 Total: -1.00 -70.46 332.11 4.68 -65.78 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: 0.32 Total: 37.88 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.40 Total: -6.65 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -2.90 Total: -109.74 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.17 Total: -29.24 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -70.46 4.68 -65.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163402643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.950 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds