Wall clock time and date at job start Mon Mar 30 2020 23:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 O 1.45193 * 109.46988 * 119.99840 * 2 1 3 5 5 C 1.34232 * 117.00145 * 149.99772 * 4 2 1 6 6 O 1.20825 * 119.99980 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00304 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47137 * 60.00037 * 7 5 4 9 9 C 1.53003 * 109.47242 * 300.00605 * 7 5 4 10 10 N 1.46498 * 109.47437 * 180.02562 * 7 5 4 11 11 C 1.32211 * 120.00019 * 233.32647 * 10 7 5 12 12 C 1.46914 * 120.83600 * 353.71699 * 11 10 7 13 13 C 1.34373 * 119.36967 * 179.97438 * 12 11 10 14 14 N 1.36417 * 121.22322 * 359.97438 * 13 12 11 15 15 H 0.96998 * 119.09278 * 179.97438 * 14 13 12 16 16 C 1.37773 * 121.82225 * 0.02562 * 14 13 12 17 17 C 1.40171 * 119.74665 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00289 * 202.85103 * 17 16 14 19 19 C 1.40359 * 120.00313 * 22.85091 * 17 16 14 20 20 N 1.30586 * 119.99349 * 17.47105 * 19 17 16 21 21 Si 1.86795 * 119.99948 * 197.47593 * 19 17 16 22 22 H 1.48496 * 109.47197 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47040 * 120.00098 * 21 19 17 24 24 H 1.48505 * 109.46911 * 239.99798 * 21 19 17 25 25 C 1.39074 * 120.50923 * 359.73377 * 16 14 13 26 26 H 1.08997 * 109.46937 * 300.00600 * 1 2 3 27 27 H 1.09007 * 109.46484 * 60.00313 * 1 2 3 28 28 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47406 * 239.99435 * 2 1 3 30 30 H 1.09009 * 109.46848 * 299.99819 * 3 2 1 31 31 H 1.08997 * 109.47588 * 59.99798 * 3 2 1 32 32 H 1.09002 * 109.47588 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47299 * 179.97438 * 9 7 5 34 34 H 1.09001 * 109.46591 * 299.99767 * 9 7 5 35 35 H 1.09000 * 109.47540 * 59.99473 * 9 7 5 36 36 H 1.08000 * 120.30985 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.38675 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99283 * 180.02562 * 20 19 17 39 39 H 1.07994 * 120.63278 * 180.26555 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6844 1.1855 5 6 3.1936 -1.3170 1.0851 6 8 3.8019 -1.2990 0.0413 7 6 3.7599 -2.0487 2.2747 8 1 3.0669 -2.8313 2.5835 9 6 3.9650 -1.0649 3.4284 10 7 5.0456 -2.6498 1.9116 11 6 5.2535 -3.9394 2.1153 12 6 4.2637 -4.7584 2.8279 13 6 4.5048 -6.0665 3.0182 14 7 5.6513 -6.6480 2.5616 15 1 5.7939 -7.5949 2.7164 16 6 6.6127 -5.9273 1.8874 17 6 7.7745 -6.5691 1.4367 18 1 8.6707 -5.9958 1.2508 19 6 7.7732 -7.9570 1.2271 20 7 6.6417 -8.5993 1.1156 21 14 9.3899 -8.8850 1.1077 22 1 10.5194 -7.9339 1.2653 23 1 9.4524 -9.9105 2.1800 24 1 9.4832 -9.5483 -0.2177 25 6 6.4367 -4.5692 1.6454 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 4.3742 -1.5942 4.2889 34 1 4.6580 -0.2823 3.1195 35 1 3.0086 -0.6173 3.6987 36 1 3.3505 -4.3134 3.1946 37 1 3.7771 -6.6690 3.5417 38 1 6.6408 -9.5585 0.9710 39 1 7.1870 -4.0032 1.1134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163406915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:17 Heat of formation + Delta-G solvation = -58.233029 kcal Electronic energy + Delta-G solvation = -21153.000963 eV Core-core repulsion = 17867.431537 eV Total energy + Delta-G solvation = -3285.569426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94180 -38.63618 -36.44782 -35.04234 -33.79795 -32.93443 -31.23196 -30.56757 -27.69706 -27.28262 -26.03976 -24.25678 -22.00035 -21.54516 -20.56994 -19.45664 -18.09812 -17.12880 -16.69792 -16.02026 -15.58154 -15.31652 -14.91842 -14.59647 -14.03239 -13.68843 -13.38710 -13.11475 -12.96142 -12.82950 -12.33265 -12.27774 -12.11752 -11.84727 -11.72533 -11.62419 -11.53018 -11.23954 -11.12653 -10.91370 -10.79536 -10.63029 -10.31388 -10.19577 -9.75054 -9.71699 -9.36155 -8.30631 -7.58481 -7.35245 -6.07127 -4.84803 2.51105 2.61056 2.86109 2.92870 2.96205 3.00354 3.31265 3.61770 4.22833 4.55498 4.85259 4.98087 5.16868 5.21623 5.35634 5.47221 5.48957 5.59704 5.68757 5.78359 5.79294 5.91643 6.01664 6.06080 6.16990 6.24778 6.39070 6.46626 6.62714 6.67596 6.71470 6.80530 7.02191 7.32451 7.57311 7.70331 7.93511 8.14527 8.23261 8.54980 8.72987 8.85182 9.61041 9.65024 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.003426 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.402612 B = 8171.031430 C = 8283.699225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.167 4.167 4 O -0.365 6.365 5 C 0.460 3.540 6 O -0.490 6.490 7 C 0.098 3.902 8 H 0.067 0.933 9 C -0.130 4.130 10 N -0.650 5.650 11 C 0.290 3.710 12 C -0.309 4.309 13 C 0.132 3.868 14 N -0.600 5.600 15 H 0.414 0.586 16 C 0.330 3.670 17 C -0.463 4.463 18 H 0.105 0.895 19 C 0.076 3.924 20 N -0.810 5.810 21 Si 0.924 3.076 22 H -0.254 1.254 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.349 4.349 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.293 0.707 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 4.114 3.048 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 C -0.224 4.224 4 O -0.283 6.283 5 C 0.301 3.699 6 O -0.374 6.374 7 C -0.015 4.015 8 H 0.084 0.916 9 C -0.188 4.188 10 N -0.380 5.380 11 C 0.131 3.869 12 C -0.339 4.339 13 C 0.001 3.999 14 N -0.210 5.210 15 H 0.254 0.746 16 C 0.222 3.778 17 C -0.496 4.496 18 H 0.123 0.877 19 C -0.143 4.143 20 N -0.438 5.438 21 Si 0.748 3.252 22 H -0.177 1.177 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.378 4.378 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.374 4.792 2.335 9.099 hybrid contribution -0.191 -1.356 0.138 1.376 sum -7.565 3.436 2.473 8.669 Atomic orbital electron populations 1.21856 0.93020 1.02882 1.02604 1.22566 0.94482 0.92679 0.88247 1.22173 1.02332 0.95520 1.02388 1.86606 1.38053 1.63288 1.40337 1.24621 0.78029 0.76089 0.91150 1.90574 1.58747 1.57346 1.30782 1.20845 0.95592 0.96106 0.89003 0.91601 1.21743 1.00969 0.98992 0.97144 1.73576 1.14892 1.09636 1.39850 1.20294 0.91398 0.88795 0.86446 1.22288 1.03520 0.94533 1.13564 1.21254 0.88729 0.94517 0.95359 1.42096 1.16195 1.13776 1.48974 0.74601 1.17653 0.85357 0.89906 0.84924 1.19588 0.98142 0.92054 1.39780 0.87668 1.26235 0.99134 0.98180 0.90721 1.69362 1.27929 1.11588 1.34890 0.85959 0.81057 0.79288 0.78929 1.17741 1.19384 1.19489 1.20262 1.02684 0.92780 1.22077 0.91637 0.90883 0.91881 0.90205 0.91263 0.91822 0.91917 0.92097 0.92475 0.92779 0.86473 0.84953 0.89612 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.57 37.16 0.36 -1.21 16 2 C 0.08 1.09 3.18 -26.73 -0.09 1.01 16 3 C -0.17 -2.09 9.55 37.16 0.35 -1.73 16 4 O -0.36 -6.40 9.78 -39.26 -0.38 -6.79 16 5 C 0.46 9.74 7.30 36.01 0.26 10.00 16 6 O -0.49 -12.01 15.65 -18.75 -0.29 -12.31 16 7 C 0.10 2.06 3.31 -69.08 -0.23 1.83 16 8 H 0.07 1.32 5.34 -51.93 -0.28 1.04 16 9 C -0.13 -2.30 9.45 37.16 0.35 -1.95 16 10 N -0.65 -16.29 9.70 -51.91 -0.50 -16.79 16 11 C 0.29 7.21 6.80 -82.74 -0.56 6.65 16 12 C -0.31 -6.51 9.34 -37.44 -0.35 -6.86 16 13 C 0.13 2.52 11.15 -16.88 -0.19 2.34 16 14 N -0.60 -12.85 4.88 -10.83 -0.05 -12.90 16 15 H 0.41 8.41 6.37 -40.82 -0.26 8.15 16 16 C 0.33 8.01 6.36 -84.16 -0.54 7.48 16 17 C -0.46 -10.87 9.03 -38.06 -0.34 -11.22 16 18 H 0.11 2.42 7.91 -52.48 -0.42 2.00 16 19 C 0.08 1.63 5.17 -17.28 -0.09 1.54 16 20 N -0.81 -17.44 11.15 55.57 0.62 -16.82 16 21 Si 0.92 16.16 29.60 -169.99 -5.03 11.13 16 22 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 23 H -0.27 -4.56 7.11 56.52 0.40 -4.16 16 24 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 25 C -0.35 -9.00 9.83 -37.82 -0.37 -9.37 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.28 7.16 -51.93 -0.37 0.91 16 30 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 36 H 0.12 2.20 6.01 -52.49 -0.32 1.89 16 37 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.29 5.64 8.29 -40.82 -0.34 5.30 16 39 H 0.12 3.09 8.06 -52.49 -0.42 2.67 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -29.27 332.55 -7.49 -36.76 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.42 Total: 14.22 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.43 Total: -1.50 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.06 Total: -46.52 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.68 Total: -19.10 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.27 -7.49 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163406915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.475 kcal (2) G-P(sol) polarization free energy of solvation -29.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds