Wall clock time and date at job start Mon Mar 30 2020 23:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47355 * 2 1 4 4 O 1.45193 * 109.46988 * 119.99840 * 2 1 3 5 5 C 1.34232 * 117.00145 * 149.99772 * 4 2 1 6 6 O 1.20825 * 119.99980 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00304 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47137 * 60.00037 * 7 5 4 9 9 C 1.53003 * 109.47242 * 300.00605 * 7 5 4 10 10 N 1.46498 * 109.47437 * 180.02562 * 7 5 4 11 11 C 1.32211 * 120.00019 * 233.32647 * 10 7 5 12 12 C 1.46914 * 120.83600 * 353.71699 * 11 10 7 13 13 C 1.34373 * 119.36967 * 179.97438 * 12 11 10 14 14 N 1.36417 * 121.22322 * 359.97438 * 13 12 11 15 15 H 0.96998 * 119.09278 * 179.97438 * 14 13 12 16 16 C 1.37773 * 121.82225 * 0.02562 * 14 13 12 17 17 C 1.40171 * 119.74665 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00289 * 202.85103 * 17 16 14 19 19 C 1.40359 * 120.00313 * 22.85091 * 17 16 14 20 20 N 1.30586 * 119.99349 * 17.47105 * 19 17 16 21 21 Si 1.86795 * 119.99948 * 197.47593 * 19 17 16 22 22 H 1.48496 * 109.47197 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47040 * 120.00098 * 21 19 17 24 24 H 1.48505 * 109.46911 * 239.99798 * 21 19 17 25 25 C 1.39074 * 120.50923 * 359.73377 * 16 14 13 26 26 H 1.08997 * 109.46937 * 300.00600 * 1 2 3 27 27 H 1.09007 * 109.46484 * 60.00313 * 1 2 3 28 28 H 1.08998 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47406 * 239.99435 * 2 1 3 30 30 H 1.09009 * 109.46848 * 299.99819 * 3 2 1 31 31 H 1.08997 * 109.47588 * 59.99798 * 3 2 1 32 32 H 1.09002 * 109.47588 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47299 * 179.97438 * 9 7 5 34 34 H 1.09001 * 109.46591 * 299.99767 * 9 7 5 35 35 H 1.09000 * 109.47540 * 59.99473 * 9 7 5 36 36 H 1.08000 * 120.30985 * 0.02562 * 12 11 10 37 37 H 1.08003 * 119.38675 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99283 * 180.02562 * 20 19 17 39 39 H 1.07994 * 120.63278 * 180.26555 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6844 1.1855 5 6 3.1936 -1.3170 1.0851 6 8 3.8019 -1.2990 0.0413 7 6 3.7599 -2.0487 2.2747 8 1 3.0669 -2.8313 2.5835 9 6 3.9650 -1.0649 3.4284 10 7 5.0456 -2.6498 1.9116 11 6 5.2535 -3.9394 2.1153 12 6 4.2637 -4.7584 2.8279 13 6 4.5048 -6.0665 3.0182 14 7 5.6513 -6.6480 2.5616 15 1 5.7939 -7.5949 2.7164 16 6 6.6127 -5.9273 1.8874 17 6 7.7745 -6.5691 1.4367 18 1 8.6707 -5.9958 1.2508 19 6 7.7732 -7.9570 1.2271 20 7 6.6417 -8.5993 1.1156 21 14 9.3899 -8.8850 1.1077 22 1 10.5194 -7.9339 1.2653 23 1 9.4524 -9.9105 2.1800 24 1 9.4832 -9.5483 -0.2177 25 6 6.4367 -4.5692 1.6454 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8901 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 4.3742 -1.5942 4.2889 34 1 4.6580 -0.2823 3.1195 35 1 3.0086 -0.6173 3.6987 36 1 3.3505 -4.3134 3.1946 37 1 3.7771 -6.6690 3.5417 38 1 6.6408 -9.5585 0.9710 39 1 7.1870 -4.0032 1.1134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163406915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:16 Heat of formation + Delta-G solvation = -76.176741 kcal Electronic energy + Delta-G solvation = -21153.779061 eV Core-core repulsion = 17867.431537 eV Total energy + Delta-G solvation = -3286.347524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50361 -40.34004 -37.96125 -36.77258 -35.48762 -34.16716 -32.86895 -32.25719 -29.38721 -28.22007 -27.79116 -25.79048 -23.57621 -23.15212 -21.97256 -21.04534 -19.82132 -18.69774 -18.42707 -17.58419 -17.12681 -16.87790 -16.46952 -16.11034 -15.49650 -15.17020 -14.73793 -14.62599 -14.49021 -14.23757 -13.64142 -13.51384 -13.32341 -13.23761 -13.16948 -13.08864 -12.86730 -12.81003 -12.70483 -12.45305 -12.35360 -11.92479 -11.88702 -11.54010 -11.41996 -11.35518 -11.06086 -10.02788 -9.33480 -9.02192 -7.83064 -6.70742 0.88124 0.98266 1.30935 1.41622 1.52493 1.58078 1.83891 2.15801 2.54090 2.88879 3.45216 3.80671 3.88992 3.91303 3.97138 4.10863 4.13494 4.28194 4.45796 4.62346 4.66025 4.74027 4.80556 4.83335 4.90556 4.92243 4.96753 5.02312 5.09280 5.15271 5.20201 5.24625 5.53408 5.59761 5.74552 5.95526 6.05274 6.36547 6.47329 6.93804 6.96013 7.15313 7.85690 8.00192 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.003426 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.402612 B = 8171.031430 C = 8283.699225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.061 3.939 3 C -0.162 4.162 4 O -0.356 6.356 5 C 0.464 3.536 6 O -0.536 6.536 7 C 0.090 3.910 8 H 0.079 0.921 9 C -0.119 4.119 10 N -0.692 5.692 11 C 0.272 3.728 12 C -0.326 4.326 13 C 0.146 3.854 14 N -0.600 5.600 15 H 0.419 0.581 16 C 0.323 3.677 17 C -0.491 4.491 18 H 0.095 0.905 19 C 0.050 3.950 20 N -0.818 5.818 21 Si 0.996 3.004 22 H -0.262 1.262 23 H -0.251 1.251 24 H -0.266 1.266 25 C -0.398 4.398 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.191 0.809 38 H 0.308 0.692 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 2.805 4.148 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 C -0.219 4.219 4 O -0.273 6.273 5 C 0.307 3.693 6 O -0.424 6.424 7 C -0.024 4.024 8 H 0.097 0.903 9 C -0.177 4.177 10 N -0.422 5.422 11 C 0.113 3.887 12 C -0.356 4.356 13 C 0.016 3.984 14 N -0.211 5.211 15 H 0.261 0.739 16 C 0.214 3.786 17 C -0.523 4.523 18 H 0.113 0.887 19 C -0.168 4.168 20 N -0.445 5.445 21 Si 0.816 3.184 22 H -0.186 1.186 23 H -0.175 1.175 24 H -0.191 1.191 25 C -0.428 4.428 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.208 0.792 38 H 0.120 0.880 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.287 3.495 3.457 10.507 hybrid contribution 0.327 -0.965 -0.274 1.055 sum -8.959 2.530 3.183 9.839 Atomic orbital electron populations 1.21871 0.89474 1.03419 1.04713 1.23032 0.97110 0.93085 0.86088 1.22170 1.00443 0.94611 1.04707 1.86570 1.36111 1.62814 1.41844 1.24676 0.78499 0.75699 0.90433 1.90552 1.60251 1.59246 1.32380 1.21014 0.94389 0.97033 0.89925 0.90335 1.21668 1.02377 0.97870 0.95788 1.73429 1.17685 1.10468 1.40638 1.20472 0.91961 0.89373 0.86935 1.22388 1.03731 0.95151 1.14297 1.22002 0.88293 0.94508 0.93571 1.42107 1.16467 1.13843 1.48684 0.73934 1.17700 0.86304 0.89565 0.85050 1.19785 0.97862 0.93612 1.41054 0.88687 1.26952 1.02572 0.97773 0.89547 1.69330 1.29436 1.12774 1.32953 0.84913 0.76307 0.77825 0.79375 1.18609 1.17452 1.19100 1.20172 1.03592 0.93998 1.24996 0.90171 0.88068 0.92171 0.92578 0.88349 0.90100 0.94847 0.91631 0.93773 0.89585 0.84084 0.79248 0.88019 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.57 71.98 0.69 -1.90 16 2 C 0.06 1.73 3.18 30.59 0.10 1.83 16 3 C -0.16 -3.87 9.55 71.98 0.69 -3.19 16 4 O -0.36 -12.33 9.78 -51.43 -0.50 -12.84 16 5 C 0.46 20.12 7.30 71.24 0.52 20.64 16 6 O -0.54 -27.66 15.65 21.97 0.34 -27.32 16 7 C 0.09 3.82 3.31 44.25 0.15 3.97 16 8 H 0.08 3.10 5.34 -2.39 -0.01 3.09 16 9 C -0.12 -4.14 9.45 71.98 0.68 -3.46 16 10 N -0.69 -36.40 9.70 -318.14 -3.09 -39.48 16 11 C 0.27 14.12 6.80 42.30 0.29 14.41 16 12 C -0.33 -13.57 9.34 23.66 0.22 -13.35 16 13 C 0.15 5.31 11.15 83.10 0.93 6.24 16 14 N -0.60 -25.35 4.88 -188.19 -0.92 -26.26 16 15 H 0.42 16.42 6.37 -92.71 -0.59 15.83 16 16 C 0.32 16.24 6.36 38.88 0.25 16.49 16 17 C -0.49 -23.79 9.03 23.26 0.21 -23.58 16 18 H 0.10 4.64 7.91 -2.91 -0.02 4.62 16 19 C 0.05 2.11 5.17 85.39 0.44 2.55 16 20 N -0.82 -33.97 11.15 21.90 0.24 -33.73 16 21 Si 1.00 32.02 29.60 68.60 2.03 34.05 16 22 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 23 H -0.25 -7.35 7.11 99.48 0.71 -6.65 16 24 H -0.27 -8.42 7.11 99.48 0.71 -7.71 16 25 C -0.40 -22.00 9.83 23.41 0.23 -21.77 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.85 7.16 -2.39 -0.02 1.83 16 30 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 2.40 8.11 -2.39 -0.02 2.38 16 36 H 0.14 5.05 6.01 -2.91 -0.02 5.04 16 37 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.31 11.11 8.29 -92.71 -0.77 10.34 16 39 H 0.08 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.57 332.55 3.96 -64.60 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.47 Total: 42.12 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 5.38 Total: -1.14 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -3.76 Total: -99.48 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.16 Total: -40.16 kcal Atomic # 14 Polarization: 32.02 SS G_CDS: 2.03 Total: 34.05 kcal Total: -68.57 3.96 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163406915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.573 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds