Wall clock time and date at job start Tue Mar 31 2020 00:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47515 * 2 1 4 4 C 1.46900 * 111.00095 * 199.68258 * 3 2 1 5 5 C 1.50703 * 109.46801 * 71.91347 * 4 3 2 6 6 H 1.08000 * 120.00568 * 2.47167 * 5 4 3 7 7 C 1.37877 * 119.99734 * 182.46807 * 5 4 3 8 8 N 1.31518 * 120.00003 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00215 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47098 * 89.99830 * 9 7 5 11 11 H 1.48499 * 109.46968 * 210.00115 * 9 7 5 12 12 H 1.48501 * 109.46827 * 330.00158 * 9 7 5 13 13 C 1.39031 * 110.99923 * 75.73026 * 3 2 1 14 14 N 1.32342 * 119.64609 * 62.25554 * 13 3 2 15 15 C 1.31880 * 121.96041 * 179.97438 * 14 13 3 16 16 C 1.37993 * 121.00243 * 359.74003 * 15 14 13 17 17 C 1.40013 * 119.16834 * 0.48923 * 16 15 14 18 18 C 1.48060 * 120.88382 * 179.79478 * 17 16 15 19 19 O 1.21433 * 119.99793 * 173.66547 * 18 17 16 20 20 O 1.34670 * 120.00644 * 353.38838 * 18 17 16 21 21 C 1.45197 * 117.00495 * 179.97438 * 20 18 17 22 22 C 1.39083 * 119.64059 * 242.23197 * 13 3 2 23 23 C 1.50703 * 120.53510 * 359.97438 * 22 13 3 24 24 H 1.09001 * 109.46953 * 63.96030 * 1 2 3 25 25 H 1.08996 * 109.47682 * 183.96481 * 1 2 3 26 26 H 1.08998 * 109.47351 * 303.96753 * 1 2 3 27 27 H 1.08993 * 109.47081 * 239.99482 * 2 1 3 28 28 H 1.09010 * 109.46685 * 119.99917 * 2 1 3 29 29 H 1.08993 * 109.47439 * 191.91432 * 4 3 2 30 30 H 1.08999 * 109.47084 * 311.91740 * 4 3 2 31 31 H 0.96996 * 119.99939 * 180.02562 * 8 7 5 32 32 H 1.08008 * 119.49825 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.41377 * 180.28159 * 16 15 14 34 34 H 1.08999 * 109.47058 * 300.00176 * 21 20 18 35 35 H 1.08999 * 109.46846 * 60.00089 * 21 20 18 36 36 H 1.08997 * 109.47232 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.47104 * 263.72257 * 23 22 13 38 38 H 1.09003 * 109.47414 * 23.72154 * 23 22 13 39 39 H 1.09001 * 109.47293 * 143.72147 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4127 1.4508 -0.4619 5 6 3.4631 1.1871 -1.9448 6 1 2.5482 1.0298 -2.4968 7 6 4.6772 1.1466 -2.5969 8 7 4.7213 0.9170 -3.8911 9 14 6.2597 1.4180 -1.6422 10 1 6.7659 0.1146 -1.1422 11 1 7.2755 2.0348 -2.5326 12 1 5.9957 2.3203 -0.4927 13 6 1.8842 1.9613 1.2579 14 7 2.5393 1.4483 2.2871 15 6 2.4445 1.9586 3.4995 16 6 1.6545 3.0628 3.7461 17 6 0.9377 3.6386 2.6902 18 6 0.0751 4.8212 2.9129 19 8 -0.4482 5.3775 1.9688 20 8 -0.1338 5.2766 4.1629 21 6 -0.9900 6.4405 4.3061 22 6 1.0621 3.0712 1.4210 23 6 0.3189 3.6528 0.2461 24 1 -0.3633 0.4511 -0.9234 25 1 -0.3634 -1.0251 0.0711 26 1 -0.3634 0.5742 0.8523 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8177 2.4413 -0.2551 30 1 4.0047 0.6997 0.0610 31 1 5.5754 0.8882 -4.3498 32 1 2.9965 1.5076 4.3109 33 1 1.5874 3.4756 4.7419 34 1 -0.5594 7.2780 3.7574 35 1 -1.9792 6.2150 3.9075 36 1 -1.0740 6.7022 5.3609 37 1 0.8868 4.4867 -0.1664 38 1 0.1913 2.8866 -0.5186 39 1 -0.6591 4.0058 0.5733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:36 Heat of formation + Delta-G solvation = -31.342964 kcal Electronic energy + Delta-G solvation = -21998.441568 eV Core-core repulsion = 18714.038182 eV Total energy + Delta-G solvation = -3284.403385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00942 -39.88320 -36.82817 -36.58347 -33.35804 -32.66341 -31.45151 -30.17143 -28.30923 -27.35427 -26.43845 -24.38741 -22.41260 -21.98532 -21.51771 -20.07528 -18.02954 -17.20849 -16.80208 -16.59974 -16.14817 -15.31417 -15.21143 -15.09324 -14.17172 -13.96402 -13.75441 -13.50276 -13.25716 -13.00724 -12.66549 -12.48995 -12.38062 -12.32191 -12.14873 -11.51461 -11.37262 -11.25017 -11.00516 -10.79848 -10.55994 -10.48904 -10.40739 -9.93240 -9.70523 -9.46436 -9.25103 -8.60187 -8.51873 -7.79667 -6.07382 -4.05309 0.61923 1.20652 2.42512 2.50635 3.28887 3.36174 3.40354 3.84053 4.22758 4.41378 4.49067 4.67445 4.85537 4.91926 4.94473 5.10581 5.18242 5.24853 5.31941 5.60580 5.71097 5.76789 5.87602 5.91500 6.01622 6.03081 6.19303 6.24442 6.44708 6.50852 6.60368 6.67419 6.78019 6.87822 6.91834 7.55347 7.57397 7.68756 8.00774 8.10311 8.60090 9.01284 9.53750 11.05298 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004898 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.858402 B = 5714.848327 C = 5830.229469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.476 5.476 4 C 0.173 3.827 5 C -0.511 4.511 6 H 0.084 0.916 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.310 3.690 14 N -0.485 5.485 15 C 0.090 3.910 16 C -0.134 4.134 17 C -0.092 4.092 18 C 0.511 3.489 19 O -0.489 6.489 20 O -0.356 6.356 21 C 0.037 3.963 22 C -0.041 4.041 23 C -0.110 4.110 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.002 0.998 31 H 0.264 0.736 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 6.076 17.572 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.200 5.200 4 C 0.049 3.951 5 C -0.549 4.549 6 H 0.102 0.898 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.080 3.920 14 N -0.198 5.198 15 C -0.068 4.068 16 C -0.154 4.154 17 C -0.101 4.101 18 C 0.355 3.645 19 O -0.376 6.376 20 O -0.272 6.272 21 C -0.057 4.057 22 C -0.045 4.045 23 C -0.167 4.167 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.601 5.794 16.664 20.086 hybrid contribution 0.938 0.635 1.209 1.656 sum -8.663 6.428 17.872 20.876 Atomic orbital electron populations 1.21785 0.96092 1.00554 1.01757 1.22099 0.94582 0.87785 1.02403 1.60259 1.25280 1.19154 1.15305 1.20184 0.81667 0.96317 0.96948 1.20966 0.94937 1.48650 0.90350 0.89751 1.24829 0.98657 0.94725 0.94729 1.69881 1.25894 1.49630 1.08157 0.86907 0.83928 0.78979 0.80249 1.20115 1.21101 1.19341 1.20105 0.90644 0.91614 0.89659 1.67797 1.20227 1.31445 1.00317 1.22525 0.96770 0.93411 0.94069 1.22283 0.96831 0.96879 0.99401 1.19188 1.00485 0.95783 0.94693 1.21123 0.79053 0.83333 0.80962 1.90824 1.47446 1.56957 1.42378 1.86529 1.64310 1.45866 1.30528 1.23285 0.93586 0.85570 1.03233 1.20856 0.95515 0.93915 0.94215 1.20932 0.99351 1.01452 0.94953 0.91794 0.92850 0.94071 0.88515 0.94326 0.95830 0.97994 0.92579 0.82503 0.83805 0.91719 0.91734 0.87995 0.90440 0.89311 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.06 37.16 0.37 -1.92 16 2 C 0.06 1.11 5.50 -3.82 -0.02 1.09 16 3 N -0.48 -10.07 3.23 -174.59 -0.56 -10.63 16 4 C 0.17 4.28 3.55 -4.97 -0.02 4.26 16 5 C -0.51 -14.30 8.87 -34.44 -0.31 -14.61 16 6 H 0.08 2.54 8.00 -52.49 -0.42 2.12 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 9 Si 0.87 21.72 27.42 -169.99 -4.66 17.06 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.59 6.61 56.52 0.37 -6.22 16 13 C 0.31 5.91 4.51 -155.06 -0.70 5.21 16 14 N -0.49 -8.77 9.45 -12.48 -0.12 -8.88 16 15 C 0.09 1.25 11.16 -17.62 -0.20 1.05 16 16 C -0.13 -1.69 9.70 -39.01 -0.38 -2.07 16 17 C -0.09 -1.37 5.90 -104.70 -0.62 -1.99 16 18 C 0.51 7.11 7.86 34.76 0.27 7.39 16 19 O -0.49 -7.65 13.31 -19.21 -0.26 -7.90 16 20 O -0.36 -4.00 9.94 -40.41 -0.40 -4.40 16 21 C 0.04 0.29 10.56 101.05 1.07 1.36 16 22 C -0.04 -0.70 5.96 -103.81 -0.62 -1.32 16 23 C -0.11 -1.85 8.65 36.01 0.31 -1.54 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 27 H 0.10 2.03 7.08 -51.93 -0.37 1.66 16 28 H 0.04 0.73 7.50 -51.92 -0.39 0.34 16 29 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 30 H 0.00 0.06 7.35 -51.93 -0.38 -0.33 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.14 1.37 7.72 -52.49 -0.41 0.96 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.56 7.29 -51.93 -0.38 1.18 16 39 H 0.08 1.25 5.95 -51.93 -0.31 0.94 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -31.95 326.81 -6.77 -38.72 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.54 Total: -1.38 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.93 Total: -1.11 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.09 Total: -45.91 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.66 Total: -12.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.66 Total: 17.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.95 -6.77 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.378 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds