Wall clock time and date at job start Tue Mar 31 2020 00:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47515 * 2 1 4 4 C 1.46900 * 111.00095 * 199.68258 * 3 2 1 5 5 C 1.50703 * 109.46801 * 71.91347 * 4 3 2 6 6 H 1.08000 * 120.00568 * 2.47167 * 5 4 3 7 7 C 1.37877 * 119.99734 * 182.46807 * 5 4 3 8 8 N 1.31518 * 120.00003 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00215 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47098 * 89.99830 * 9 7 5 11 11 H 1.48499 * 109.46968 * 210.00115 * 9 7 5 12 12 H 1.48501 * 109.46827 * 330.00158 * 9 7 5 13 13 C 1.39031 * 110.99923 * 75.73026 * 3 2 1 14 14 N 1.32342 * 119.64609 * 62.25554 * 13 3 2 15 15 C 1.31880 * 121.96041 * 179.97438 * 14 13 3 16 16 C 1.37993 * 121.00243 * 359.74003 * 15 14 13 17 17 C 1.40013 * 119.16834 * 0.48923 * 16 15 14 18 18 C 1.48060 * 120.88382 * 179.79478 * 17 16 15 19 19 O 1.21433 * 119.99793 * 173.66547 * 18 17 16 20 20 O 1.34670 * 120.00644 * 353.38838 * 18 17 16 21 21 C 1.45197 * 117.00495 * 179.97438 * 20 18 17 22 22 C 1.39083 * 119.64059 * 242.23197 * 13 3 2 23 23 C 1.50703 * 120.53510 * 359.97438 * 22 13 3 24 24 H 1.09001 * 109.46953 * 63.96030 * 1 2 3 25 25 H 1.08996 * 109.47682 * 183.96481 * 1 2 3 26 26 H 1.08998 * 109.47351 * 303.96753 * 1 2 3 27 27 H 1.08993 * 109.47081 * 239.99482 * 2 1 3 28 28 H 1.09010 * 109.46685 * 119.99917 * 2 1 3 29 29 H 1.08993 * 109.47439 * 191.91432 * 4 3 2 30 30 H 1.08999 * 109.47084 * 311.91740 * 4 3 2 31 31 H 0.96996 * 119.99939 * 180.02562 * 8 7 5 32 32 H 1.08008 * 119.49825 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.41377 * 180.28159 * 16 15 14 34 34 H 1.08999 * 109.47058 * 300.00176 * 21 20 18 35 35 H 1.08999 * 109.46846 * 60.00089 * 21 20 18 36 36 H 1.08997 * 109.47232 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.47104 * 263.72257 * 23 22 13 38 38 H 1.09003 * 109.47414 * 23.72154 * 23 22 13 39 39 H 1.09001 * 109.47293 * 143.72147 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4127 1.4508 -0.4619 5 6 3.4631 1.1871 -1.9448 6 1 2.5482 1.0298 -2.4968 7 6 4.6772 1.1466 -2.5969 8 7 4.7213 0.9170 -3.8911 9 14 6.2597 1.4180 -1.6422 10 1 6.7659 0.1146 -1.1422 11 1 7.2755 2.0348 -2.5326 12 1 5.9957 2.3203 -0.4927 13 6 1.8842 1.9613 1.2579 14 7 2.5393 1.4483 2.2871 15 6 2.4445 1.9586 3.4995 16 6 1.6545 3.0628 3.7461 17 6 0.9377 3.6386 2.6902 18 6 0.0751 4.8212 2.9129 19 8 -0.4482 5.3775 1.9688 20 8 -0.1338 5.2766 4.1629 21 6 -0.9900 6.4405 4.3061 22 6 1.0621 3.0712 1.4210 23 6 0.3189 3.6528 0.2461 24 1 -0.3633 0.4511 -0.9234 25 1 -0.3634 -1.0251 0.0711 26 1 -0.3634 0.5742 0.8523 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 3.8177 2.4413 -0.2551 30 1 4.0047 0.6997 0.0610 31 1 5.5754 0.8882 -4.3498 32 1 2.9965 1.5076 4.3109 33 1 1.5874 3.4756 4.7419 34 1 -0.5594 7.2780 3.7574 35 1 -1.9792 6.2150 3.9075 36 1 -1.0740 6.7022 5.3609 37 1 0.8868 4.4867 -0.1664 38 1 0.1913 2.8866 -0.5186 39 1 -0.6591 4.0058 0.5733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:32 Heat of formation + Delta-G solvation = -51.322614 kcal Electronic energy + Delta-G solvation = -21999.307951 eV Core-core repulsion = 18714.038182 eV Total energy + Delta-G solvation = -3285.269768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 5.79 seconds Orbital eigenvalues (eV) -42.16277 -41.03115 -38.22381 -37.67236 -34.80191 -34.58578 -32.72726 -31.84093 -29.46448 -28.69720 -27.75117 -25.63238 -24.01357 -23.52955 -22.73105 -21.41036 -19.35995 -18.78623 -18.23469 -17.57967 -17.34579 -16.89770 -16.67468 -16.23033 -15.93622 -15.13806 -15.04212 -14.81069 -14.52790 -14.44913 -14.26309 -14.13911 -13.65224 -13.56679 -13.08626 -12.98024 -12.89372 -12.73314 -12.57862 -12.29278 -12.01107 -11.84808 -11.80909 -11.68725 -11.56603 -10.93243 -10.81279 -10.59451 -9.77042 -9.43016 -8.30624 -6.33674 -0.53718 0.00013 1.31425 1.32433 1.39816 1.43416 1.48906 2.31301 2.63718 2.82767 3.02572 3.47176 3.50529 3.77019 3.94127 4.01344 4.27750 4.31608 4.35662 4.42175 4.49071 4.60365 4.66289 4.73369 4.75325 4.79179 4.80315 4.85488 4.96521 5.04765 5.13893 5.24192 5.32160 5.33439 5.47974 5.49792 5.90365 6.25569 6.56045 6.63459 6.72135 6.87688 7.29308 8.85481 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004898 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.858402 B = 5714.848327 C = 5830.229469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 N -0.485 5.485 4 C 0.192 3.808 5 C -0.514 4.514 6 H 0.047 0.953 7 C 0.018 3.982 8 N -0.940 5.940 9 Si 0.939 3.061 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.262 1.262 13 C 0.279 3.721 14 N -0.512 5.512 15 C 0.092 3.908 16 C -0.104 4.104 17 C -0.096 4.096 18 C 0.516 3.484 19 O -0.513 6.513 20 O -0.349 6.349 21 C 0.029 3.971 22 C -0.059 4.059 23 C -0.099 4.099 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.012 0.988 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 6.906 21.511 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 N -0.209 5.209 4 C 0.066 3.934 5 C -0.552 4.552 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.581 5.581 9 Si 0.763 3.237 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.187 1.187 13 C 0.051 3.949 14 N -0.225 5.225 15 C -0.066 4.066 16 C -0.124 4.124 17 C -0.106 4.106 18 C 0.361 3.639 19 O -0.402 6.402 20 O -0.265 6.265 21 C -0.064 4.064 22 C -0.063 4.063 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.014 0.986 31 H 0.077 0.923 32 H 0.215 0.785 33 H 0.204 0.796 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.523 6.625 20.616 23.656 hybrid contribution 0.790 0.437 0.143 0.914 sum -8.733 7.062 20.759 23.603 Atomic orbital electron populations 1.21667 0.93494 1.02139 1.01541 1.22063 0.96688 0.86966 1.00919 1.60053 1.22827 1.20099 1.17888 1.19776 0.84153 0.95030 0.94479 1.21136 0.93737 1.48105 0.92219 0.93440 1.25668 1.02310 0.94447 0.95598 1.70016 1.27045 1.51087 1.09923 0.85838 0.79477 0.79396 0.78970 1.18952 1.20239 1.18668 1.19884 0.92999 0.92933 0.89120 1.67711 1.20764 1.32430 1.01553 1.23251 0.96498 0.93404 0.93428 1.22738 0.93981 0.95247 1.00410 1.19368 1.00785 0.96124 0.94299 1.20968 0.78511 0.82860 0.81603 1.90817 1.48355 1.57672 1.43390 1.86508 1.64608 1.46874 1.28479 1.23654 0.92914 0.84163 1.05660 1.20802 0.96101 0.94010 0.95353 1.20770 0.99682 1.00348 0.94816 0.92599 0.90358 0.93520 0.91416 0.94135 0.97008 0.98614 0.92264 0.78476 0.79574 0.91865 0.91670 0.84290 0.91770 0.91043 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 10.06 71.98 0.72 -3.47 16 2 C 0.06 2.39 5.50 86.30 0.47 2.87 16 3 N -0.49 -21.19 3.23 -706.27 -2.28 -23.47 16 4 C 0.19 9.71 3.55 85.56 0.30 10.01 16 5 C -0.51 -30.10 8.87 25.60 0.23 -29.88 16 6 H 0.05 3.06 8.00 -2.91 -0.02 3.03 16 7 C 0.02 1.06 5.47 84.65 0.46 1.53 16 8 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 9 Si 0.94 45.35 27.42 68.60 1.88 47.23 16 10 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.26 -12.31 6.61 99.48 0.66 -11.65 16 13 C 0.28 10.58 4.51 133.06 0.60 11.18 16 14 N -0.51 -17.65 9.45 -193.40 -1.83 -19.48 16 15 C 0.09 2.21 11.16 84.63 0.94 3.16 16 16 C -0.10 -2.19 9.70 22.64 0.22 -1.97 16 17 C -0.10 -2.64 5.90 -19.92 -0.12 -2.76 16 18 C 0.52 13.17 7.86 70.43 0.55 13.72 16 19 O -0.51 -15.50 13.31 20.05 0.27 -15.23 16 20 O -0.35 -6.57 9.94 -55.79 -0.55 -7.12 16 21 C 0.03 0.36 10.56 113.37 1.20 1.55 16 22 C -0.06 -2.00 5.96 -19.34 -0.12 -2.11 16 23 C -0.10 -3.44 8.65 71.24 0.62 -2.83 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.44 7.62 -2.39 -0.02 1.42 16 27 H 0.07 3.02 7.08 -2.39 -0.02 3.00 16 28 H 0.04 1.56 7.50 -2.38 -0.02 1.54 16 29 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 30 H 0.00 -0.20 7.35 -2.39 -0.02 -0.22 16 31 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.19 2.35 7.72 -2.91 -0.02 2.33 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 36 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.66 7.29 -2.39 -0.02 2.65 16 39 H 0.09 2.80 5.95 -2.39 -0.01 2.79 16 Total: -1.00 -72.34 326.81 4.87 -67.47 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.00 Total: 8.11 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 6.09 Total: 1.00 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -3.81 Total: -101.46 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.29 Total: -22.36 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -72.34 4.87 -67.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.150 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.79 seconds