Wall clock time and date at job start Tue Mar 31 2020 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47037 * 2 1 4 4 C 1.34662 * 116.99769 * 179.97438 * 3 2 1 5 5 O 1.21431 * 120.00461 * 0.02562 * 4 3 2 6 6 C 1.48070 * 120.00094 * 179.97438 * 4 3 2 7 7 C 1.40055 * 120.88142 * 359.97438 * 6 4 3 8 8 C 1.37947 * 119.17158 * 180.02562 * 7 6 4 9 9 N 1.31924 * 121.00544 * 0.02562 * 8 7 6 10 10 C 1.32324 * 121.95401 * 359.72317 * 9 8 7 11 11 N 1.39025 * 119.64045 * 180.27269 * 10 9 8 12 12 C 1.46495 * 120.00163 * 5.26908 * 11 10 9 13 13 C 1.53002 * 109.47740 * 89.99810 * 12 11 10 14 14 C 1.46499 * 119.99524 * 185.26783 * 11 10 9 15 15 C 1.50694 * 109.47328 * 90.00099 * 14 11 10 16 16 H 1.08005 * 119.99926 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00123 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46992 * 120.00098 * 19 17 15 22 22 H 1.48500 * 109.47309 * 240.00101 * 19 17 15 23 23 C 1.39119 * 120.71328 * 0.54113 * 10 9 8 24 24 H 1.09005 * 109.47192 * 60.00517 * 1 2 3 25 25 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47578 * 300.00122 * 1 2 3 27 27 H 1.08999 * 109.47139 * 239.99572 * 2 1 3 28 28 H 1.08997 * 109.46911 * 120.00068 * 2 1 3 29 29 H 1.07999 * 120.41889 * 359.97438 * 7 6 4 30 30 H 1.07994 * 119.50447 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47236 * 210.00302 * 12 11 10 32 32 H 1.09003 * 109.47215 * 329.99325 * 12 11 10 33 33 H 1.08999 * 109.46703 * 59.99623 * 13 12 11 34 34 H 1.08993 * 109.47239 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.46710 * 300.00422 * 13 12 11 36 36 H 1.09008 * 109.46616 * 210.00056 * 14 11 10 37 37 H 1.08995 * 109.47337 * 329.99625 * 14 11 10 38 38 H 0.97001 * 120.00650 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.53976 * 179.75671 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5454 0.0005 5 8 4.0888 0.5824 0.0005 6 6 3.9150 2.9136 0.0000 7 6 3.0791 4.0374 -0.0016 8 6 3.6442 5.2958 -0.0026 9 7 4.9541 5.4525 -0.0026 10 6 5.7828 4.4209 0.0038 11 7 7.1554 4.6417 0.0093 12 6 7.6775 6.0055 0.1245 13 6 7.8740 6.3536 1.6014 14 6 8.0796 3.5102 -0.1001 15 6 8.3821 3.2473 -1.5528 16 1 7.9307 3.8613 -2.3181 17 6 9.2351 2.2229 -1.9049 18 7 9.7852 1.4756 -0.9730 19 14 9.6095 1.8966 -3.7057 20 1 8.8709 2.8704 -4.5492 21 1 11.0681 2.0435 -3.9425 22 1 9.1875 0.5168 -4.0569 23 6 5.2954 3.1179 -0.0004 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0055 3.9202 -0.0029 30 1 3.0047 6.1660 -0.0043 31 1 8.6333 6.0738 -0.3952 32 1 6.9704 6.7043 -0.3225 33 1 8.5812 5.6548 2.0483 34 1 8.2629 7.3682 1.6870 35 1 6.9183 6.2853 2.1209 36 1 9.0046 3.7445 0.4271 37 1 7.6237 2.6245 0.3422 38 1 10.3856 0.7551 -1.2207 39 1 5.9744 2.2780 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:44 Heat of formation + Delta-G solvation = -46.012373 kcal Electronic energy + Delta-G solvation = -21479.891739 eV Core-core repulsion = 18194.852240 eV Total energy + Delta-G solvation = -3285.039499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.46938 -39.40129 -36.50855 -36.23577 -32.96000 -32.35274 -31.56020 -31.06186 -29.10971 -26.60780 -25.21693 -23.41674 -23.11934 -22.31435 -21.29039 -19.97167 -17.79080 -16.98259 -16.52280 -16.46405 -15.85640 -15.38629 -15.11348 -14.49902 -14.31365 -14.00363 -13.98027 -13.40631 -13.24802 -12.95304 -12.82707 -12.60895 -12.04611 -11.98468 -11.82503 -11.65686 -11.34412 -11.17565 -10.94211 -10.65358 -10.53148 -10.51895 -10.40250 -10.10688 -9.95017 -9.50643 -9.08371 -8.97246 -8.52429 -6.82709 -6.10573 -4.21010 1.05577 1.82791 2.66506 2.92773 3.25466 3.33642 3.37760 3.79520 4.35452 4.41851 4.72347 4.82759 4.90050 4.96480 5.17051 5.19964 5.42666 5.52738 5.55668 5.64002 5.64345 5.70832 5.81112 5.85216 5.92906 6.12093 6.26766 6.30411 6.39392 6.51843 6.57315 6.68572 6.86785 7.08704 7.22803 7.68542 7.87120 7.92255 8.09526 8.26621 8.63852 8.89456 9.46411 10.92906 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.005763 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.067807 B = 4857.329707 C = 6422.045413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.510 3.490 5 O -0.493 6.493 6 C -0.045 4.045 7 C -0.214 4.214 8 C 0.138 3.862 9 N -0.539 5.539 10 C 0.415 3.585 11 N -0.581 5.581 12 C 0.124 3.876 13 C -0.163 4.163 14 C 0.248 3.752 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.160 4.160 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.153 0.847 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 3.221 3.650 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.354 3.646 5 O -0.380 6.380 6 C -0.054 4.054 7 C -0.238 4.238 8 C -0.020 4.020 9 N -0.258 5.258 10 C 0.178 3.822 11 N -0.289 5.289 12 C 0.001 3.999 13 C -0.221 4.221 14 C 0.128 3.872 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.185 4.185 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.761 3.576 3.675 14.685 hybrid contribution -0.029 -1.373 -1.022 1.712 sum -13.790 2.203 2.653 14.214 Atomic orbital electron populations 1.21795 0.92665 1.02827 1.03492 1.23025 0.95212 0.80317 1.02788 1.86530 1.23958 1.32085 1.84479 1.21280 0.80399 0.89987 0.72955 1.90869 1.60275 1.42309 1.44522 1.19040 0.93422 0.89792 1.03147 1.21798 1.00404 0.92522 1.09026 1.22223 0.89967 0.96053 0.93757 1.67082 1.04488 1.33914 1.20348 1.18284 0.86289 0.87955 0.89714 1.47219 1.00738 1.08330 1.72638 1.21232 0.99517 0.83535 0.95649 1.22141 1.01508 1.00602 0.97886 1.19455 0.87582 0.82869 0.97293 1.21548 1.27881 1.15892 0.92212 0.92070 1.24939 0.95506 0.95517 0.97852 1.69926 1.30764 1.19659 1.32586 0.86451 0.78034 0.78301 0.84766 1.19703 1.20833 1.20787 1.21789 0.94071 0.98444 1.04239 0.91463 0.90337 0.91488 0.91130 0.91181 0.84770 0.82999 0.90796 0.90617 0.92792 0.92524 0.92999 0.94272 0.94415 0.92558 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -5.12 9.57 -40.39 -0.39 -5.51 16 4 C 0.51 9.09 7.92 34.76 0.28 9.36 16 5 O -0.49 -10.23 16.23 -19.21 -0.31 -10.55 16 6 C -0.05 -0.82 5.90 -104.70 -0.62 -1.44 16 7 C -0.21 -3.21 9.70 -39.01 -0.38 -3.59 16 8 C 0.14 2.07 11.16 -17.62 -0.20 1.87 16 9 N -0.54 -9.86 9.04 -12.48 -0.11 -9.98 16 10 C 0.42 8.57 7.37 -155.07 -1.14 7.43 16 11 N -0.58 -12.44 2.57 -175.23 -0.45 -12.89 16 12 C 0.12 2.26 6.19 -4.04 -0.03 2.24 16 13 C -0.16 -2.54 10.24 37.16 0.38 -2.16 16 14 C 0.25 6.14 5.00 -5.20 -0.03 6.11 16 15 C -0.54 -14.61 9.39 -34.44 -0.32 -14.94 16 16 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.16 -3.34 8.84 -38.77 -0.34 -3.68 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.13 1.65 7.71 -52.49 -0.40 1.24 16 30 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.08 1.33 7.29 -51.93 -0.38 0.95 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 1.01 8.07 -51.92 -0.42 0.59 16 37 H 0.04 1.00 5.97 -51.93 -0.31 0.69 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.16 3.64 5.71 -52.49 -0.30 3.34 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -30.64 337.35 -7.93 -38.57 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.58 Total: 0.65 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.88 Total: 3.01 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.17 Total: -47.74 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.70 Total: -16.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.64 -7.93 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.442 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds