Wall clock time and date at job start Tue Mar 31 2020 00:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47037 * 2 1 4 4 C 1.34662 * 116.99769 * 179.97438 * 3 2 1 5 5 O 1.21431 * 120.00461 * 0.02562 * 4 3 2 6 6 C 1.48070 * 120.00094 * 179.97438 * 4 3 2 7 7 C 1.40055 * 120.88142 * 359.97438 * 6 4 3 8 8 C 1.37947 * 119.17158 * 180.02562 * 7 6 4 9 9 N 1.31924 * 121.00544 * 0.02562 * 8 7 6 10 10 C 1.32324 * 121.95401 * 359.72317 * 9 8 7 11 11 N 1.39025 * 119.64045 * 180.27269 * 10 9 8 12 12 C 1.46495 * 120.00163 * 5.26908 * 11 10 9 13 13 C 1.53002 * 109.47740 * 89.99810 * 12 11 10 14 14 C 1.46499 * 119.99524 * 185.26783 * 11 10 9 15 15 C 1.50694 * 109.47328 * 90.00099 * 14 11 10 16 16 H 1.08005 * 119.99926 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00123 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47108 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46992 * 120.00098 * 19 17 15 22 22 H 1.48500 * 109.47309 * 240.00101 * 19 17 15 23 23 C 1.39119 * 120.71328 * 0.54113 * 10 9 8 24 24 H 1.09005 * 109.47192 * 60.00517 * 1 2 3 25 25 H 1.09007 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47578 * 300.00122 * 1 2 3 27 27 H 1.08999 * 109.47139 * 239.99572 * 2 1 3 28 28 H 1.08997 * 109.46911 * 120.00068 * 2 1 3 29 29 H 1.07999 * 120.41889 * 359.97438 * 7 6 4 30 30 H 1.07994 * 119.50447 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47236 * 210.00302 * 12 11 10 32 32 H 1.09003 * 109.47215 * 329.99325 * 12 11 10 33 33 H 1.08999 * 109.46703 * 59.99623 * 13 12 11 34 34 H 1.08993 * 109.47239 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.46710 * 300.00422 * 13 12 11 36 36 H 1.09008 * 109.46616 * 210.00056 * 14 11 10 37 37 H 1.08995 * 109.47337 * 329.99625 * 14 11 10 38 38 H 0.97001 * 120.00650 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.53976 * 179.75671 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3490 1.5454 0.0005 5 8 4.0888 0.5824 0.0005 6 6 3.9150 2.9136 0.0000 7 6 3.0791 4.0374 -0.0016 8 6 3.6442 5.2958 -0.0026 9 7 4.9541 5.4525 -0.0026 10 6 5.7828 4.4209 0.0038 11 7 7.1554 4.6417 0.0093 12 6 7.6775 6.0055 0.1245 13 6 7.8740 6.3536 1.6014 14 6 8.0796 3.5102 -0.1001 15 6 8.3821 3.2473 -1.5528 16 1 7.9307 3.8613 -2.3181 17 6 9.2351 2.2229 -1.9049 18 7 9.7852 1.4756 -0.9730 19 14 9.6095 1.8966 -3.7057 20 1 8.8709 2.8704 -4.5492 21 1 11.0681 2.0435 -3.9425 22 1 9.1875 0.5168 -4.0569 23 6 5.2954 3.1179 -0.0004 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0055 3.9202 -0.0029 30 1 3.0047 6.1660 -0.0043 31 1 8.6333 6.0738 -0.3952 32 1 6.9704 6.7043 -0.3225 33 1 8.5812 5.6548 2.0483 34 1 8.2629 7.3682 1.6870 35 1 6.9183 6.2853 2.1209 36 1 9.0046 3.7445 0.4271 37 1 7.6237 2.6245 0.3422 38 1 10.3856 0.7551 -1.2207 39 1 5.9744 2.2780 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:41 Heat of formation + Delta-G solvation = -62.680914 kcal Electronic energy + Delta-G solvation = -21480.614541 eV Core-core repulsion = 18194.852240 eV Total energy + Delta-G solvation = -3285.762301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.85235 -40.80892 -37.91570 -37.72211 -34.94569 -33.77489 -32.72241 -32.26438 -30.78277 -28.38530 -26.55543 -25.24187 -24.29161 -23.54236 -22.73896 -21.40585 -19.24020 -18.62311 -18.35988 -17.67600 -17.30619 -16.98413 -16.58546 -16.23599 -15.79903 -15.24155 -15.22139 -14.91822 -14.53353 -14.36598 -14.33134 -13.65003 -13.62877 -13.36714 -13.07508 -12.97483 -12.81706 -12.67092 -12.53317 -12.47600 -12.18236 -11.93854 -11.81476 -11.72433 -11.58409 -11.02220 -10.69568 -10.67835 -10.39554 -8.53299 -8.09938 -6.41149 -0.38475 0.44675 1.34001 1.35859 1.42574 1.47504 1.51152 2.20479 2.38986 2.98272 3.03711 3.51425 3.67586 3.99171 4.00974 4.07190 4.15734 4.24881 4.31483 4.37435 4.48444 4.62069 4.70291 4.79979 4.89517 4.94191 4.95387 5.00281 5.07328 5.10481 5.12205 5.25789 5.35130 5.36947 5.61077 5.65861 5.99583 6.14426 6.56712 6.67439 6.71251 7.18341 7.33410 8.80220 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.005763 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.067807 B = 4857.329707 C = 6422.045413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.341 6.341 4 C 0.513 3.487 5 O -0.534 6.534 6 C -0.052 4.052 7 C -0.186 4.186 8 C 0.147 3.853 9 N -0.538 5.538 10 C 0.398 3.602 11 N -0.596 5.596 12 C 0.123 3.877 13 C -0.151 4.151 14 C 0.268 3.732 15 C -0.545 4.545 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.281 1.281 23 C -0.199 4.199 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.175 0.825 30 H 0.207 0.793 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.011 0.989 38 H 0.268 0.732 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.643 4.885 3.070 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.257 6.257 4 C 0.359 3.641 5 O -0.424 6.424 6 C -0.061 4.061 7 C -0.208 4.208 8 C -0.011 4.011 9 N -0.257 5.257 10 C 0.163 3.837 11 N -0.306 5.306 12 C 0.001 3.999 13 C -0.209 4.209 14 C 0.146 3.854 15 C -0.584 4.584 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.563 5.563 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.207 1.207 23 C -0.225 4.225 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.193 0.807 30 H 0.224 0.776 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.734 5.269 3.102 17.816 hybrid contribution 0.638 -1.876 -0.805 2.138 sum -16.096 3.393 2.297 16.609 Atomic orbital electron populations 1.21820 0.89249 1.04597 1.04144 1.23431 0.97737 0.78717 1.02572 1.86519 1.21603 1.34071 1.83548 1.21335 0.81298 0.89486 0.72011 1.90851 1.61503 1.43526 1.46545 1.19226 0.92739 0.91200 1.02916 1.22274 1.01923 0.91225 1.05414 1.23178 0.89096 0.97900 0.90969 1.67169 1.05838 1.32835 1.19869 1.18297 0.86200 0.88354 0.90866 1.47029 1.01001 1.08306 1.74252 1.21368 0.99117 0.82101 0.97335 1.22033 1.01101 1.01975 0.95789 1.18900 0.87346 0.83458 0.95670 1.21757 1.27682 1.15826 0.93136 0.93077 1.25757 0.95369 0.95274 1.02056 1.70031 1.31449 1.20226 1.34582 0.85463 0.78358 0.77938 0.79677 1.19347 1.19501 1.20679 1.21498 0.95080 0.97552 1.08359 0.90878 0.88018 0.90685 0.91656 0.91347 0.80739 0.77623 0.91770 0.89648 0.94215 0.89353 0.93268 0.95972 0.97089 0.92316 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.34 -9.34 9.57 -55.71 -0.53 -9.87 16 4 C 0.51 18.43 7.92 70.43 0.56 18.99 16 5 O -0.53 -23.33 16.23 20.06 0.33 -23.00 16 6 C -0.05 -1.87 5.90 -19.91 -0.12 -1.99 16 7 C -0.19 -4.93 9.70 22.64 0.22 -4.71 16 8 C 0.15 3.81 11.16 84.61 0.94 4.75 16 9 N -0.54 -18.70 9.04 -193.40 -1.75 -20.45 16 10 C 0.40 16.77 7.37 133.07 0.98 17.76 16 11 N -0.60 -26.63 2.57 -708.30 -1.82 -28.45 16 12 C 0.12 4.53 6.19 86.38 0.53 5.06 16 13 C -0.15 -4.64 10.24 71.98 0.74 -3.90 16 14 C 0.27 14.21 5.00 85.63 0.43 14.64 16 15 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 17 C 0.02 0.87 5.46 84.65 0.46 1.33 16 18 N -0.92 -55.25 13.29 21.45 0.28 -54.96 16 19 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 C -0.20 -8.74 8.84 22.80 0.20 -8.54 16 24 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 25 H 0.10 0.88 8.14 -2.38 -0.02 0.87 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.18 3.28 7.71 -2.91 -0.02 3.26 16 30 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 31 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 32 H 0.09 2.93 7.29 -2.39 -0.02 2.91 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.02 1.23 8.07 -2.38 -0.02 1.21 16 37 H 0.01 0.65 5.97 -2.39 -0.01 0.63 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.11 5.88 5.71 -2.91 -0.02 5.86 16 Total: -1.00 -70.87 337.35 5.95 -64.92 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.04 Total: 11.74 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.38 Total: 12.95 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.29 Total: -103.86 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.21 Total: -32.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.87 5.95 -64.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.243 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds