Wall clock time and date at job start Tue Mar 31 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00243 * 2 1 4 4 C 1.52997 * 109.47033 * 270.00544 * 3 2 1 5 5 C 1.52998 * 109.47004 * 179.97438 * 4 3 2 6 6 O 1.43756 * 109.63550 * 294.36417 * 5 4 3 7 7 C 1.44786 * 104.81638 * 215.81179 * 6 5 4 8 8 C 1.54906 * 101.72557 * 36.09937 * 7 6 5 9 9 O 1.43366 * 109.63398 * 174.99819 * 5 4 3 10 10 C 1.39082 * 119.99859 * 180.02562 * 2 1 3 11 11 C 1.38745 * 119.65578 * 184.72431 * 10 2 1 12 12 C 1.40776 * 118.66699 * 179.75995 * 11 10 2 13 13 C 1.41553 * 120.99332 * 180.26077 * 12 11 10 14 14 H 1.08001 * 120.00017 * 203.51232 * 13 12 11 15 15 C 1.40023 * 120.00260 * 23.50707 * 13 12 11 16 16 N 1.30757 * 119.99637 * 17.03643 * 15 13 12 17 17 Si 1.86795 * 120.00263 * 197.03840 * 15 13 12 18 18 H 1.48497 * 109.47208 * 359.97438 * 17 15 13 19 19 H 1.48509 * 109.47176 * 119.99719 * 17 15 13 20 20 H 1.48503 * 109.47404 * 239.99654 * 17 15 13 21 21 C 1.41188 * 118.01352 * 0.49784 * 12 11 10 22 22 C 1.36552 * 119.14564 * 359.75753 * 21 12 11 23 23 N 1.32091 * 121.27037 * 359.97438 * 22 21 12 24 24 H 1.08992 * 109.47400 * 89.99945 * 1 2 3 25 25 H 1.09004 * 109.46718 * 209.99973 * 1 2 3 26 26 H 1.09005 * 109.46786 * 329.99261 * 1 2 3 27 27 H 1.08993 * 109.47173 * 150.00151 * 3 2 1 28 28 H 1.09006 * 109.46650 * 30.00505 * 3 2 1 29 29 H 1.08997 * 109.47217 * 299.99332 * 4 3 2 30 30 H 1.09003 * 109.47368 * 59.99791 * 4 3 2 31 31 H 1.09001 * 109.62816 * 54.60515 * 5 4 3 32 32 H 1.09001 * 110.97157 * 277.98905 * 7 6 5 33 33 H 1.09002 * 111.00843 * 154.22549 * 7 6 5 34 34 H 1.08994 * 110.69559 * 206.04883 * 8 7 6 35 35 H 1.08997 * 110.84834 * 82.90422 * 8 7 6 36 36 H 1.07999 * 120.66790 * 0.02562 * 11 10 2 37 37 H 0.97002 * 119.99263 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.42782 * 179.78284 * 21 12 11 39 39 H 1.08005 * 119.36207 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4425 6 8 2.3899 4.0704 -0.8840 7 6 2.7194 5.2582 -1.6435 8 6 2.9505 4.6726 -3.0590 9 8 3.5597 3.3941 -2.7876 10 6 2.1604 -1.2045 -0.0005 11 6 3.5443 -1.1983 0.0988 12 6 4.2267 -2.4296 0.1014 13 6 5.6374 -2.4809 0.2060 14 1 6.1752 -3.3421 -0.1621 15 6 6.3357 -1.4151 0.7866 16 7 5.7001 -0.5405 1.5220 17 14 8.1750 -1.2426 0.5105 18 1 8.6524 -2.3531 -0.3520 19 1 8.4564 0.0560 -0.1528 20 1 8.8787 -1.2937 1.8172 21 6 3.4624 -3.6116 -0.0086 22 6 2.1036 -3.5182 -0.1073 23 7 1.4947 -2.3460 -0.1012 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 3.1499 1.1383 0.5138 28 1 1.6084 2.0283 0.5140 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 4.1248 2.9347 -0.8478 32 1 3.6269 5.7261 -1.2618 33 1 1.8892 5.9645 -1.6441 34 1 3.6260 5.3071 -3.6327 35 1 2.0045 4.5446 -3.5850 36 1 4.0868 -0.2677 0.1769 37 1 6.1838 0.1980 1.9239 38 1 3.9461 -4.5772 -0.0142 39 1 1.5155 -4.4201 -0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167027161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:15 Heat of formation + Delta-G solvation = -51.927224 kcal Electronic energy + Delta-G solvation = -21921.959656 eV Core-core repulsion = 18636.663670 eV Total energy + Delta-G solvation = -3285.295986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33754 -38.57264 -35.94378 -34.99571 -34.00230 -32.18278 -30.43570 -29.11753 -28.86534 -26.29631 -25.25979 -23.74048 -23.20510 -21.72268 -21.12338 -19.73343 -17.60894 -17.20346 -16.75032 -16.01388 -15.77618 -15.10218 -14.85569 -14.49402 -14.04904 -14.03111 -13.73055 -13.36052 -13.16662 -12.84031 -12.62418 -12.48283 -12.34729 -11.98071 -11.64609 -11.54983 -11.36545 -11.27853 -11.10520 -10.78526 -10.40330 -10.31423 -10.16535 -9.83967 -9.57069 -9.36175 -8.68540 -7.90739 -7.82495 -6.78268 -6.29861 -4.50874 2.83182 3.05901 3.07372 3.11994 3.34930 3.39288 3.82779 3.91490 4.15763 4.45473 4.74131 4.74548 4.90867 5.19302 5.25100 5.34101 5.43026 5.56512 5.71397 5.77766 5.81329 5.89931 6.01843 6.09982 6.23333 6.37449 6.42466 6.59585 6.75891 6.96090 7.00161 7.05853 7.14739 7.32792 7.59556 7.82329 8.05325 8.10394 8.40576 8.77404 8.88278 8.95260 9.79384 10.15525 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.006465 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.994123 B = 4329.717835 C = 6014.155745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.625 5.625 3 C 0.141 3.859 4 C -0.147 4.147 5 C 0.236 3.764 6 O -0.376 6.376 7 C 0.016 3.984 8 C 0.020 3.980 9 O -0.384 6.384 10 C 0.385 3.615 11 C -0.276 4.276 12 C 0.151 3.849 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.080 3.920 16 N -0.785 5.785 17 Si 0.905 3.095 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.301 4.301 22 C 0.129 3.871 23 N -0.619 5.619 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.279 0.721 38 H 0.097 0.903 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 11.725 -4.530 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.342 5.342 3 C 0.016 3.984 4 C -0.187 4.187 5 C 0.141 3.859 6 O -0.296 6.296 7 C -0.061 4.061 8 C -0.056 4.056 9 O -0.305 6.305 10 C 0.158 3.842 11 C -0.303 4.303 12 C 0.143 3.857 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.139 4.139 16 N -0.411 5.411 17 Si 0.730 3.270 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.200 1.200 21 C -0.326 4.326 22 C -0.024 4.024 23 N -0.341 5.341 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.431 11.896 -4.393 13.433 hybrid contribution 1.779 0.240 -0.062 1.796 sum -2.652 12.136 -4.456 13.197 Atomic orbital electron populations 1.21238 0.80916 1.01093 0.99594 1.45894 1.04075 1.02254 1.81985 1.21113 0.98344 0.84689 0.94252 1.22481 1.00963 0.94765 1.00453 1.24155 0.92858 0.88581 0.80339 1.89259 1.64080 1.18419 1.57885 1.24345 1.02302 0.89630 0.89827 1.24150 0.99263 0.84840 0.97391 1.88937 1.73891 1.36637 1.30986 1.18116 0.88513 0.84887 0.92673 1.21545 0.91059 0.99789 1.17880 1.17586 0.93184 0.90182 0.84774 1.19606 0.91469 1.03023 1.34607 0.90229 1.25923 1.00979 0.94537 0.92458 1.69831 1.38343 1.11345 1.21555 0.86306 0.82190 0.79434 0.79097 1.18321 1.19620 1.19957 1.21491 0.94571 0.97980 1.18561 1.21229 0.92021 0.93244 0.95871 1.66749 1.40733 0.97296 1.29340 0.95278 0.91266 0.93582 0.89532 0.91316 0.89364 0.91368 0.89345 0.90717 0.87603 0.88518 0.90834 0.85290 0.90997 0.88516 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.06 10.46 59.85 0.63 2.69 16 2 N -0.62 -13.07 2.99 -181.79 -0.54 -13.61 16 3 C 0.14 2.59 5.19 -4.04 -0.02 2.57 16 4 C -0.15 -2.51 5.63 -26.73 -0.15 -2.66 16 5 C 0.24 3.59 4.01 37.16 0.15 3.74 16 6 O -0.38 -5.22 10.92 -59.04 -0.64 -5.87 16 7 C 0.02 0.15 7.95 38.16 0.30 0.45 16 8 C 0.02 0.21 8.07 38.16 0.31 0.51 16 9 O -0.38 -5.73 11.22 -59.04 -0.66 -6.40 16 10 C 0.38 9.54 7.37 -154.98 -1.14 8.40 16 11 C -0.28 -7.28 7.96 -38.44 -0.31 -7.59 16 12 C 0.15 4.10 5.61 -106.55 -0.60 3.51 16 13 C -0.46 -12.12 9.12 -37.65 -0.34 -12.46 16 14 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 15 C 0.08 1.99 5.20 -17.34 -0.09 1.90 16 16 N -0.79 -19.87 10.91 55.55 0.61 -19.26 16 17 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 18 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 21 C -0.30 -7.59 9.85 -39.07 -0.38 -7.98 16 22 C 0.13 3.08 11.10 -18.05 -0.20 2.88 16 23 N -0.62 -15.40 9.14 -12.82 -0.12 -15.51 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.31 7.45 -51.93 -0.39 0.92 16 26 H 0.05 0.69 7.89 -51.93 -0.41 0.28 16 27 H 0.09 1.76 5.99 -51.93 -0.31 1.45 16 28 H 0.07 1.14 7.60 -51.93 -0.39 0.75 16 29 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 3.39 4.16 -52.49 -0.22 3.17 16 37 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -30.27 324.16 -8.85 -39.13 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.50 Total: 7.22 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.85 Total: -4.04 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.05 Total: -48.38 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.31 Total: -12.26 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.27 -8.85 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167027161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.801 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds