Wall clock time and date at job start Tue Mar 31 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00243 * 2 1 4 4 C 1.52997 * 109.47033 * 270.00544 * 3 2 1 5 5 C 1.52998 * 109.47004 * 179.97438 * 4 3 2 6 6 O 1.43756 * 109.63550 * 294.36417 * 5 4 3 7 7 C 1.44786 * 104.81638 * 215.81179 * 6 5 4 8 8 C 1.54906 * 101.72557 * 36.09937 * 7 6 5 9 9 O 1.43366 * 109.63398 * 174.99819 * 5 4 3 10 10 C 1.39082 * 119.99859 * 180.02562 * 2 1 3 11 11 C 1.38745 * 119.65578 * 184.72431 * 10 2 1 12 12 C 1.40776 * 118.66699 * 179.75995 * 11 10 2 13 13 C 1.41553 * 120.99332 * 180.26077 * 12 11 10 14 14 H 1.08001 * 120.00017 * 203.51232 * 13 12 11 15 15 C 1.40023 * 120.00260 * 23.50707 * 13 12 11 16 16 N 1.30757 * 119.99637 * 17.03643 * 15 13 12 17 17 Si 1.86795 * 120.00263 * 197.03840 * 15 13 12 18 18 H 1.48497 * 109.47208 * 359.97438 * 17 15 13 19 19 H 1.48509 * 109.47176 * 119.99719 * 17 15 13 20 20 H 1.48503 * 109.47404 * 239.99654 * 17 15 13 21 21 C 1.41188 * 118.01352 * 0.49784 * 12 11 10 22 22 C 1.36552 * 119.14564 * 359.75753 * 21 12 11 23 23 N 1.32091 * 121.27037 * 359.97438 * 22 21 12 24 24 H 1.08992 * 109.47400 * 89.99945 * 1 2 3 25 25 H 1.09004 * 109.46718 * 209.99973 * 1 2 3 26 26 H 1.09005 * 109.46786 * 329.99261 * 1 2 3 27 27 H 1.08993 * 109.47173 * 150.00151 * 3 2 1 28 28 H 1.09006 * 109.46650 * 30.00505 * 3 2 1 29 29 H 1.08997 * 109.47217 * 299.99332 * 4 3 2 30 30 H 1.09003 * 109.47368 * 59.99791 * 4 3 2 31 31 H 1.09001 * 109.62816 * 54.60515 * 5 4 3 32 32 H 1.09001 * 110.97157 * 277.98905 * 7 6 5 33 33 H 1.09002 * 111.00843 * 154.22549 * 7 6 5 34 34 H 1.08994 * 110.69559 * 206.04883 * 8 7 6 35 35 H 1.08997 * 110.84834 * 82.90422 * 8 7 6 36 36 H 1.07999 * 120.66790 * 0.02562 * 11 10 2 37 37 H 0.97002 * 119.99263 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.42782 * 179.78284 * 21 12 11 39 39 H 1.08005 * 119.36207 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2169 3.0357 -1.4425 6 8 2.3899 4.0704 -0.8840 7 6 2.7194 5.2582 -1.6435 8 6 2.9505 4.6726 -3.0590 9 8 3.5597 3.3941 -2.7876 10 6 2.1604 -1.2045 -0.0005 11 6 3.5443 -1.1983 0.0988 12 6 4.2267 -2.4296 0.1014 13 6 5.6374 -2.4809 0.2060 14 1 6.1752 -3.3421 -0.1621 15 6 6.3357 -1.4151 0.7866 16 7 5.7001 -0.5405 1.5220 17 14 8.1750 -1.2426 0.5105 18 1 8.6524 -2.3531 -0.3520 19 1 8.4564 0.0560 -0.1528 20 1 8.8787 -1.2937 1.8172 21 6 3.4624 -3.6116 -0.0086 22 6 2.1036 -3.5182 -0.1073 23 7 1.4947 -2.3460 -0.1012 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 3.1499 1.1383 0.5138 28 1 1.6084 2.0283 0.5140 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 4.1248 2.9347 -0.8478 32 1 3.6269 5.7261 -1.2618 33 1 1.8892 5.9645 -1.6441 34 1 3.6260 5.3071 -3.6327 35 1 2.0045 4.5446 -3.5850 36 1 4.0868 -0.2677 0.1769 37 1 6.1838 0.1980 1.9239 38 1 3.9461 -4.5772 -0.0142 39 1 1.5155 -4.4201 -0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167027161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:14 Heat of formation + Delta-G solvation = -69.891764 kcal Electronic energy + Delta-G solvation = -21922.738657 eV Core-core repulsion = 18636.663670 eV Total energy + Delta-G solvation = -3286.074987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.38246 -40.40474 -37.59988 -36.04972 -35.89361 -33.56410 -32.29738 -30.74840 -30.10844 -28.04943 -26.87464 -25.22379 -24.14595 -23.37839 -22.73136 -21.47969 -19.39449 -18.33050 -17.82257 -17.51981 -17.19427 -16.77218 -16.40780 -15.93412 -15.75418 -15.44200 -15.09840 -14.87957 -14.52726 -14.29149 -14.07756 -13.83586 -13.75473 -13.61717 -13.16329 -12.97991 -12.87827 -12.78067 -12.58448 -12.40866 -11.93357 -11.89446 -11.70434 -11.22481 -11.20389 -10.75294 -10.43130 -9.86892 -9.78050 -8.66050 -8.08891 -6.50989 1.05424 1.13626 1.38556 1.52996 1.58840 2.20028 2.25832 2.48749 2.82335 2.98819 3.67711 3.82337 3.84767 3.90187 4.07980 4.09296 4.24540 4.27412 4.39185 4.48415 4.59377 4.61207 4.71611 4.78462 4.83513 4.92391 4.95730 4.99149 5.06196 5.11720 5.17299 5.29993 5.37887 5.65740 5.97785 6.03244 6.10615 6.38044 6.50210 6.85221 6.91715 7.03873 7.87439 8.30210 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.006465 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.994123 B = 4329.717835 C = 6014.155745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.627 5.627 3 C 0.146 3.854 4 C -0.134 4.134 5 C 0.245 3.755 6 O -0.389 6.389 7 C 0.012 3.988 8 C 0.012 3.988 9 O -0.408 6.408 10 C 0.379 3.621 11 C -0.301 4.301 12 C 0.120 3.880 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.041 3.959 16 N -0.809 5.809 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.263 1.263 20 H -0.263 1.263 21 C -0.323 4.323 22 C 0.129 3.871 23 N -0.627 5.627 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.107 0.893 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 13.496 -4.854 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.344 5.344 3 C 0.022 3.978 4 C -0.173 4.173 5 C 0.149 3.851 6 O -0.310 6.310 7 C -0.063 4.063 8 C -0.063 4.063 9 O -0.330 6.330 10 C 0.151 3.849 11 C -0.327 4.327 12 C 0.112 3.888 13 C -0.520 4.520 14 H 0.096 0.904 15 C -0.176 4.176 16 N -0.435 5.435 17 Si 0.800 3.200 18 H -0.182 1.182 19 H -0.187 1.187 20 H -0.188 1.188 21 C -0.348 4.348 22 C -0.023 4.023 23 N -0.351 5.351 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.621 13.704 -4.718 15.212 hybrid contribution 1.732 -0.224 0.029 1.746 sum -2.889 13.480 -4.689 14.562 Atomic orbital electron populations 1.21381 0.78871 1.02116 1.00438 1.46166 1.05454 1.01714 1.81029 1.21133 0.97378 0.84186 0.95127 1.22258 1.00874 0.95216 0.98988 1.23812 0.92189 0.88266 0.80835 1.89226 1.63877 1.19464 1.58455 1.24670 1.04281 0.88620 0.88746 1.24492 1.00243 0.83365 0.98245 1.88916 1.74494 1.39013 1.30585 1.18377 0.88554 0.86242 0.91704 1.21547 0.91996 0.99361 1.19814 1.18034 0.94116 0.91278 0.85379 1.19869 0.91822 1.04239 1.36067 0.90366 1.26767 1.05732 0.93591 0.91498 1.69869 1.40455 1.11664 1.21479 0.85198 0.75942 0.79519 0.79337 1.18200 1.18730 1.18765 1.21686 0.95344 0.97974 1.19798 1.21776 0.92028 0.94287 0.94213 1.66904 1.40657 0.97582 1.29938 0.94420 0.92467 0.90308 0.92068 0.88949 0.92568 0.90791 0.90346 0.89464 0.84503 0.85835 0.89949 0.86079 0.90000 0.87484 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.93 10.46 127.77 1.34 5.26 16 2 N -0.63 -26.19 2.99 -729.05 -2.18 -28.37 16 3 C 0.15 5.38 5.19 86.38 0.45 5.83 16 4 C -0.13 -4.62 5.63 30.59 0.17 -4.44 16 5 C 0.24 7.38 4.01 71.98 0.29 7.67 16 6 O -0.39 -10.12 10.92 -126.22 -1.38 -11.50 16 7 C 0.01 0.20 7.95 72.63 0.58 0.78 16 8 C 0.01 0.22 8.07 72.63 0.59 0.80 16 9 O -0.41 -11.91 11.22 -126.22 -1.42 -13.32 16 10 C 0.38 19.17 7.37 132.90 0.98 20.15 16 11 C -0.30 -16.44 7.96 23.01 0.18 -16.26 16 12 C 0.12 6.76 5.61 -21.12 -0.12 6.64 16 13 C -0.49 -26.84 9.12 23.52 0.21 -26.62 16 14 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 15 C 0.04 2.08 5.20 85.29 0.44 2.52 16 16 N -0.81 -41.82 10.91 21.84 0.24 -41.58 16 17 Si 0.98 38.01 29.59 68.60 2.03 40.03 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 C -0.32 -16.66 9.85 22.60 0.22 -16.44 16 22 C 0.13 6.19 11.10 84.26 0.94 7.12 16 23 N -0.63 -31.34 9.14 -194.47 -1.78 -33.11 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 2.10 7.45 -2.39 -0.02 2.08 16 26 H 0.08 2.17 7.89 -2.38 -0.02 2.15 16 27 H 0.06 2.59 5.99 -2.39 -0.01 2.57 16 28 H 0.09 2.96 7.60 -2.38 -0.02 2.94 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.12 6.69 4.16 -2.91 -0.01 6.68 16 37 H 0.29 13.35 8.29 -92.71 -0.77 12.59 16 38 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 Total: -1.00 -66.86 324.16 2.83 -64.03 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 1.05 Total: 30.80 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 6.27 Total: -6.98 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.72 Total: -103.06 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -2.79 Total: -24.82 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -66.86 2.83 -64.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167027161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.861 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds