Wall clock time and date at job start Tue Mar 31 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00116 * 2 1 4 4 C 1.53004 * 109.47144 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46888 * 179.97438 * 4 3 2 6 6 C 1.39152 * 120.00130 * 179.97438 * 5 4 3 7 7 C 1.39414 * 119.49550 * 0.02562 * 6 5 4 8 8 C 1.37804 * 121.19631 * 179.97438 * 7 6 5 9 9 C 1.39577 * 120.13945 * 0.02562 * 8 7 6 10 10 C 1.47010 * 120.48371 * 179.97438 * 9 8 7 11 11 O 1.21567 * 119.99703 * 174.32889 * 10 9 8 12 12 O 1.34837 * 120.00375 * 354.33295 * 10 9 8 13 13 C 1.45203 * 117.00226 * 179.97438 * 12 10 9 14 14 C 1.46537 * 119.02672 * 359.97438 * 9 8 7 15 15 C 1.40941 * 120.56887 * 179.97438 * 14 9 8 16 16 H 1.08006 * 119.99631 * 327.48129 * 15 14 9 17 17 C 1.40239 * 120.00138 * 147.75454 * 15 14 9 18 18 N 1.30638 * 120.00260 * 350.50361 * 17 15 14 19 19 Si 1.86801 * 120.00206 * 170.50565 * 17 15 14 20 20 H 1.48496 * 109.47204 * 89.99773 * 19 17 15 21 21 H 1.48500 * 109.47285 * 210.00019 * 19 17 15 22 22 H 1.48504 * 109.46855 * 330.00258 * 19 17 15 23 23 C 1.38437 * 119.50238 * 180.25832 * 6 5 4 24 24 H 1.08995 * 109.47201 * 299.99633 * 1 2 3 25 25 H 1.08994 * 109.47362 * 60.00372 * 1 2 3 26 26 H 1.09001 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.00908 * 111.00144 * 236.04470 * 2 1 3 28 28 H 1.08996 * 109.47065 * 60.00141 * 3 2 1 29 29 H 1.09002 * 109.46736 * 300.00346 * 3 2 1 30 30 H 1.08996 * 109.47263 * 59.99970 * 4 3 2 31 31 H 1.08996 * 109.46928 * 299.99698 * 4 3 2 32 32 H 0.97000 * 120.00365 * 0.02562 * 5 4 3 33 33 H 1.07994 * 119.40638 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.92993 * 180.02562 * 8 7 6 35 35 H 1.08994 * 109.47217 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47026 * 300.00206 * 13 12 10 37 37 H 1.09000 * 109.46520 * 59.99878 * 13 12 10 38 38 H 0.97001 * 120.00686 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.11930 * 0.02766 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6982 -0.0013 6 6 5.4242 2.9160 -0.0014 7 6 6.2921 1.8249 -0.0014 8 6 7.6590 2.0000 -0.0021 9 6 8.2007 3.2864 -0.0021 10 6 9.6577 3.4820 -0.0023 11 8 10.1207 4.6012 -0.1063 12 8 10.4806 2.4201 0.1130 13 6 11.9077 2.6879 0.1048 14 6 7.2958 4.4390 -0.0021 15 6 7.8076 5.7522 -0.0016 16 1 8.7385 5.9687 0.5016 17 6 7.1054 6.7787 -0.6495 18 7 6.0807 6.4919 -1.4073 19 14 7.6354 8.5564 -0.4291 20 1 8.6263 8.9110 -1.4768 21 1 6.4510 9.4443 -0.5471 22 1 8.2504 8.7269 0.9118 23 6 5.9091 4.2127 0.0035 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5262 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6458 1.8947 -0.8900 30 1 3.8740 0.8074 -0.8908 31 1 3.8747 0.8071 0.8891 32 1 3.4395 3.4521 -0.0008 33 1 5.8859 0.8243 -0.0010 34 1 8.3124 1.1402 -0.0025 35 1 12.4540 1.7501 0.2048 36 1 12.1814 3.1701 -0.8336 37 1 12.1587 3.3448 0.9376 38 1 5.5947 7.2019 -1.8551 39 1 5.2238 5.0474 0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167725493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:16 Heat of formation + Delta-G solvation = -63.637186 kcal Electronic energy + Delta-G solvation = -21101.228132 eV Core-core repulsion = 17815.424364 eV Total energy + Delta-G solvation = -3285.803768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.11474 -37.91509 -36.54715 -35.25130 -34.37011 -33.34192 -30.08900 -29.60581 -27.80645 -26.55719 -25.45849 -24.21066 -22.30854 -21.84971 -20.64225 -19.36006 -17.37152 -16.62706 -16.33092 -15.77881 -15.66286 -15.24084 -15.10599 -14.90107 -14.42773 -13.85125 -13.57286 -13.41918 -12.85182 -12.70305 -12.44458 -12.28202 -12.06473 -11.87782 -11.55957 -11.45475 -11.27396 -11.10536 -10.98098 -10.87463 -10.57562 -10.27948 -9.85674 -9.59287 -9.36456 -8.90294 -8.75267 -8.67749 -7.39081 -6.86255 -6.35033 -4.45505 2.37622 2.86162 3.07783 3.15181 3.27558 3.77043 3.87255 3.94415 4.05906 4.58530 4.68074 4.95260 5.08831 5.22945 5.32418 5.52813 5.61386 5.65515 5.66477 5.75019 5.91085 6.02403 6.10482 6.15360 6.35293 6.51603 6.73344 6.83967 6.98878 7.12976 7.16205 7.24081 7.46433 7.57455 7.70055 7.85536 8.03116 8.38917 8.52184 8.68929 8.80668 8.92363 9.22058 10.10817 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.004968 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.486334 B = 5634.364665 C = 7528.606410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.693 5.693 3 C 0.047 3.953 4 C 0.135 3.865 5 N -0.755 5.755 6 C 0.244 3.756 7 C -0.304 4.304 8 C 0.003 3.997 9 C -0.288 4.288 10 C 0.505 3.495 11 O -0.524 6.524 12 O -0.376 6.376 13 C 0.041 3.959 14 C 0.184 3.816 15 C -0.415 4.415 16 H 0.104 0.896 17 C 0.072 3.928 18 N -0.783 5.783 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.238 4.238 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.343 0.657 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.391 0.609 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.282 0.718 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -7.400 1.020 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.082 4.082 4 C 0.009 3.991 5 N -0.387 5.387 6 C 0.143 3.857 7 C -0.326 4.326 8 C -0.016 4.016 9 C -0.291 4.291 10 C 0.357 3.643 11 O -0.416 6.416 12 O -0.295 6.295 13 C -0.054 4.054 14 C 0.179 3.821 15 C -0.443 4.443 16 H 0.121 0.879 17 C -0.148 4.148 18 N -0.407 5.407 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.262 4.262 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.767 -7.255 1.520 9.392 hybrid contribution -0.122 1.353 -1.073 1.731 sum -5.889 -5.901 0.447 8.349 Atomic orbital electron populations 1.22184 0.87611 1.01842 1.00479 1.60282 1.07820 1.14076 1.50169 1.22142 0.95328 0.89712 1.01058 1.20994 0.91379 0.85509 1.01189 1.44321 1.04388 1.05556 1.84472 1.17708 0.81865 0.94087 0.92070 1.19818 0.92806 0.95769 1.24240 1.20607 0.93958 0.95041 0.92039 1.19667 0.86852 0.94127 1.28495 1.21303 0.87904 0.81689 0.73410 1.90723 1.77614 1.24779 1.48471 1.86598 1.17661 1.39479 1.85750 1.22940 0.79347 1.01433 1.01643 1.18102 0.89629 0.90832 0.83566 1.20143 1.06454 0.91438 1.26255 0.87871 1.26121 0.93382 1.01986 0.93284 1.69758 1.15323 1.35466 1.20195 0.86158 0.78861 0.80459 0.80404 1.19253 1.20243 1.18216 1.20610 0.95402 0.92940 1.17268 0.91671 0.96015 0.91363 0.83944 0.90560 0.94750 0.93181 0.92023 0.77519 0.88716 0.87896 0.89595 0.92902 0.92912 0.90759 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.89 16 2 N -0.69 -7.28 6.86 -121.14 -0.83 -8.11 16 3 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 4 C 0.13 1.95 5.13 -4.04 -0.02 1.93 16 5 N -0.75 -13.38 5.71 -58.77 -0.34 -13.71 16 6 C 0.24 5.38 6.63 -84.03 -0.56 4.83 16 7 C -0.30 -6.57 9.24 -39.30 -0.36 -6.94 16 8 C 0.00 0.06 9.60 -39.24 -0.38 -0.32 16 9 C -0.29 -7.35 6.07 -102.50 -0.62 -7.97 16 10 C 0.51 12.55 7.85 34.29 0.27 12.82 16 11 O -0.52 -14.08 13.55 -19.32 -0.26 -14.34 16 12 O -0.38 -7.91 9.85 -40.87 -0.40 -8.32 16 13 C 0.04 0.67 10.57 101.05 1.07 1.73 16 14 C 0.18 4.95 5.67 -104.67 -0.59 4.36 16 15 C -0.41 -11.38 7.85 -37.81 -0.30 -11.68 16 16 H 0.10 2.93 5.97 -52.48 -0.31 2.61 16 17 C 0.07 1.82 5.26 -17.31 -0.09 1.73 16 18 N -0.78 -19.88 11.06 55.56 0.61 -19.27 16 19 Si 0.92 19.36 29.57 -169.99 -5.03 14.34 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.24 -5.94 8.46 -38.65 -0.33 -6.27 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.34 3.22 8.82 -39.29 -0.35 2.87 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 31 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 32 H 0.39 6.49 8.46 -40.82 -0.35 6.15 16 33 H 0.09 1.82 6.58 -52.49 -0.35 1.47 16 34 H 0.10 2.09 7.63 -52.49 -0.40 1.69 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 39 H 0.12 3.05 6.49 -52.49 -0.34 2.71 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -29.91 329.91 -7.99 -37.90 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.43 Total: 10.89 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.29 Total: -4.36 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.55 Total: -41.09 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.66 Total: -22.66 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.91 -7.99 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167725493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.735 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds