Wall clock time and date at job start Tue Mar 31 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 111.00116 * 2 1 4 4 C 1.53004 * 109.47144 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46888 * 179.97438 * 4 3 2 6 6 C 1.39152 * 120.00130 * 179.97438 * 5 4 3 7 7 C 1.39414 * 119.49550 * 0.02562 * 6 5 4 8 8 C 1.37804 * 121.19631 * 179.97438 * 7 6 5 9 9 C 1.39577 * 120.13945 * 0.02562 * 8 7 6 10 10 C 1.47010 * 120.48371 * 179.97438 * 9 8 7 11 11 O 1.21567 * 119.99703 * 174.32889 * 10 9 8 12 12 O 1.34837 * 120.00375 * 354.33295 * 10 9 8 13 13 C 1.45203 * 117.00226 * 179.97438 * 12 10 9 14 14 C 1.46537 * 119.02672 * 359.97438 * 9 8 7 15 15 C 1.40941 * 120.56887 * 179.97438 * 14 9 8 16 16 H 1.08006 * 119.99631 * 327.48129 * 15 14 9 17 17 C 1.40239 * 120.00138 * 147.75454 * 15 14 9 18 18 N 1.30638 * 120.00260 * 350.50361 * 17 15 14 19 19 Si 1.86801 * 120.00206 * 170.50565 * 17 15 14 20 20 H 1.48496 * 109.47204 * 89.99773 * 19 17 15 21 21 H 1.48500 * 109.47285 * 210.00019 * 19 17 15 22 22 H 1.48504 * 109.46855 * 330.00258 * 19 17 15 23 23 C 1.38437 * 119.50238 * 180.25832 * 6 5 4 24 24 H 1.08995 * 109.47201 * 299.99633 * 1 2 3 25 25 H 1.08994 * 109.47362 * 60.00372 * 1 2 3 26 26 H 1.09001 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.00908 * 111.00144 * 236.04470 * 2 1 3 28 28 H 1.08996 * 109.47065 * 60.00141 * 3 2 1 29 29 H 1.09002 * 109.46736 * 300.00346 * 3 2 1 30 30 H 1.08996 * 109.47263 * 59.99970 * 4 3 2 31 31 H 1.08996 * 109.46928 * 299.99698 * 4 3 2 32 32 H 0.97000 * 120.00365 * 0.02562 * 5 4 3 33 33 H 1.07994 * 119.40638 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.92993 * 180.02562 * 8 7 6 35 35 H 1.08994 * 109.47217 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.47026 * 300.00206 * 13 12 10 37 37 H 1.09000 * 109.46520 * 59.99878 * 13 12 10 38 38 H 0.97001 * 120.00686 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.11930 * 0.02766 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0499 2.6982 -0.0013 6 6 5.4242 2.9160 -0.0014 7 6 6.2921 1.8249 -0.0014 8 6 7.6590 2.0000 -0.0021 9 6 8.2007 3.2864 -0.0021 10 6 9.6577 3.4820 -0.0023 11 8 10.1207 4.6012 -0.1063 12 8 10.4806 2.4201 0.1130 13 6 11.9077 2.6879 0.1048 14 6 7.2958 4.4390 -0.0021 15 6 7.8076 5.7522 -0.0016 16 1 8.7385 5.9687 0.5016 17 6 7.1054 6.7787 -0.6495 18 7 6.0807 6.4919 -1.4073 19 14 7.6354 8.5564 -0.4291 20 1 8.6263 8.9110 -1.4768 21 1 6.4510 9.4443 -0.5471 22 1 8.2504 8.7269 0.9118 23 6 5.9091 4.2127 0.0035 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5262 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6458 1.8947 -0.8900 30 1 3.8740 0.8074 -0.8908 31 1 3.8747 0.8071 0.8891 32 1 3.4395 3.4521 -0.0008 33 1 5.8859 0.8243 -0.0010 34 1 8.3124 1.1402 -0.0025 35 1 12.4540 1.7501 0.2048 36 1 12.1814 3.1701 -0.8336 37 1 12.1587 3.3448 0.9376 38 1 5.5947 7.2019 -1.8551 39 1 5.2238 5.0474 0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167725493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:15 Heat of formation + Delta-G solvation = -83.978199 kcal Electronic energy + Delta-G solvation = -21102.110185 eV Core-core repulsion = 17815.424364 eV Total energy + Delta-G solvation = -3286.685821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91826 -39.53152 -37.75354 -36.94387 -35.98745 -35.03601 -31.62265 -31.35763 -29.21461 -27.98224 -27.23301 -25.23502 -23.73942 -23.38512 -22.28560 -21.13440 -19.20999 -18.33787 -17.79777 -17.37012 -17.04646 -16.89672 -16.50891 -16.43043 -15.56425 -15.16524 -14.98814 -14.69449 -14.46195 -14.19033 -14.07715 -14.00271 -13.44843 -13.13743 -12.98442 -12.84751 -12.70068 -12.66901 -12.56381 -12.34471 -12.20318 -11.98327 -11.51737 -11.39851 -11.19670 -10.70442 -10.52636 -9.47922 -9.28539 -8.72165 -8.04185 -6.43001 0.51292 1.07504 1.34964 1.47998 1.54222 2.17590 2.20764 2.23535 2.56804 2.78906 3.53442 3.71455 3.96008 4.14086 4.37616 4.41957 4.46583 4.50793 4.53787 4.55058 4.62863 4.70707 4.82949 4.90948 5.00407 5.03658 5.06734 5.14365 5.28571 5.46837 5.66688 5.78772 5.90262 5.93604 6.06607 6.10650 6.39389 6.52783 6.82239 6.86426 6.91706 7.11708 7.36949 8.26618 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.004968 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.486334 B = 5634.364665 C = 7528.606410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.700 5.700 3 C 0.058 3.942 4 C 0.135 3.865 5 N -0.745 5.745 6 C 0.254 3.746 7 C -0.300 4.300 8 C 0.006 3.994 9 C -0.322 4.322 10 C 0.503 3.497 11 O -0.557 6.557 12 O -0.374 6.374 13 C 0.033 3.967 14 C 0.157 3.843 15 C -0.455 4.455 16 H 0.081 0.919 17 C 0.036 3.964 18 N -0.807 5.807 19 Si 0.980 3.020 20 H -0.269 1.269 21 H -0.254 1.254 22 H -0.263 1.263 23 C -0.263 4.263 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.083 0.917 27 H 0.350 0.650 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.291 0.709 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -9.022 0.931 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.332 5.332 3 C -0.071 4.071 4 C 0.010 3.990 5 N -0.376 5.376 6 C 0.150 3.850 7 C -0.322 4.322 8 C -0.013 4.013 9 C -0.326 4.326 10 C 0.356 3.644 11 O -0.451 6.451 12 O -0.292 6.292 13 C -0.060 4.060 14 C 0.153 3.847 15 C -0.483 4.483 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.432 5.432 19 Si 0.801 3.199 20 H -0.195 1.195 21 H -0.178 1.178 22 H -0.187 1.187 23 C -0.288 4.288 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.830 -8.928 1.431 11.331 hybrid contribution 0.162 1.618 -1.037 1.929 sum -6.668 -7.309 0.394 9.902 Atomic orbital electron populations 1.22242 0.86286 1.02945 1.00674 1.60278 1.09086 1.13106 1.50727 1.21962 0.93215 0.90739 1.01232 1.21141 0.93286 0.83318 1.01238 1.44435 1.02892 1.07517 1.82729 1.17797 0.83941 0.93249 0.89996 1.20173 0.92431 0.96969 1.22617 1.20888 0.94886 0.94687 0.90805 1.19969 0.87562 0.95041 1.29978 1.21322 0.88329 0.81893 0.72829 1.90694 1.78242 1.26117 1.50041 1.86544 1.19814 1.37802 1.85078 1.23356 0.76838 1.04231 1.01615 1.18481 0.90933 0.91422 0.83907 1.20143 1.06619 0.93003 1.28547 0.90117 1.26796 0.93360 1.05354 0.92525 1.69771 1.15995 1.36908 1.20514 0.85244 0.79030 0.75926 0.79725 1.19451 1.17804 1.18723 1.20508 0.94673 0.93951 1.19650 0.91737 0.95536 0.89865 0.83177 0.90572 0.94470 0.92672 0.92154 0.76879 0.85576 0.85360 0.84792 0.93090 0.92969 0.89833 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.77 16 2 N -0.70 -12.81 6.86 -537.17 -3.68 -16.49 16 3 C 0.06 1.23 5.80 86.30 0.50 1.73 16 4 C 0.13 3.55 5.13 86.38 0.44 4.00 16 5 N -0.75 -25.28 5.71 -339.85 -1.94 -27.22 16 6 C 0.25 11.05 6.63 38.31 0.25 11.31 16 7 C -0.30 -12.41 9.24 22.45 0.21 -12.20 16 8 C 0.01 0.28 9.60 22.49 0.22 0.50 16 9 C -0.32 -16.77 6.07 -18.49 -0.11 -16.88 16 10 C 0.50 25.58 7.85 70.12 0.55 26.13 16 11 O -0.56 -31.13 13.55 19.62 0.27 -30.86 16 12 O -0.37 -15.51 9.85 -57.49 -0.57 -16.07 16 13 C 0.03 1.03 10.57 113.37 1.20 2.23 16 14 C 0.16 8.81 5.67 -19.90 -0.11 8.70 16 15 C -0.45 -26.25 7.85 23.42 0.18 -26.07 16 16 H 0.08 4.89 5.97 -2.91 -0.02 4.87 16 17 C 0.04 1.91 5.26 85.36 0.45 2.36 16 18 N -0.81 -42.04 11.06 21.87 0.24 -41.79 16 19 Si 0.98 40.75 29.57 68.60 2.03 42.78 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C -0.26 -13.48 8.46 22.87 0.19 -13.28 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.35 5.57 8.82 -89.69 -0.79 4.78 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.44 7.90 -2.39 -0.02 1.42 16 31 H 0.06 1.66 7.90 -2.39 -0.02 1.64 16 32 H 0.40 12.73 8.46 -92.71 -0.78 11.95 16 33 H 0.13 4.39 6.58 -2.91 -0.02 4.38 16 34 H 0.13 4.93 7.63 -2.91 -0.02 4.91 16 35 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 39 H 0.11 5.66 6.49 -2.91 -0.02 5.64 16 Total: -1.00 -67.17 329.91 1.19 -65.98 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.49 Total: 33.40 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.34 Total: -9.72 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -5.38 Total: -85.50 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.30 Total: -46.94 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -67.17 1.19 -65.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167725493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.997 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds