Wall clock time and date at job start Tue Mar 31 2020 01:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46993 * 2 1 4 4 C 1.34729 * 116.99994 * 180.02562 * 3 2 1 5 5 O 1.21481 * 119.99700 * 0.02562 * 4 3 2 6 6 C 1.47605 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.40039 * 120.98472 * 5.69942 * 6 4 3 8 8 C 1.37912 * 119.08803 * 180.02562 * 7 6 4 9 9 N 1.31949 * 121.14036 * 0.02657 * 8 7 6 10 10 C 1.31554 * 122.19750 * 359.67617 * 9 8 7 11 11 C 1.39221 * 120.75953 * 0.58706 * 10 9 8 12 12 N 1.38851 * 120.60533 * 179.73207 * 11 10 9 13 13 C 1.46499 * 120.00424 * 354.52045 * 12 11 10 14 14 C 1.53005 * 109.47204 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46874 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47017 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99777 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00108 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47431 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47408 * 120.00012 * 20 18 16 23 23 H 1.48501 * 109.46757 * 239.99494 * 20 18 16 24 24 H 1.08995 * 109.47502 * 59.99925 * 1 2 3 25 25 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46772 * 299.99690 * 1 2 3 27 27 H 1.09005 * 109.46772 * 240.00310 * 2 1 3 28 28 H 1.08995 * 109.47502 * 120.00074 * 2 1 3 29 29 H 1.07995 * 120.45427 * 359.97438 * 7 6 4 30 30 H 1.08000 * 119.42785 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.62360 * 180.31636 * 10 9 8 32 32 H 0.97004 * 120.00238 * 174.52331 * 12 11 10 33 33 H 1.09002 * 109.47086 * 60.00078 * 13 12 11 34 34 H 1.08999 * 109.46916 * 300.00166 * 13 12 11 35 35 H 1.08999 * 109.47165 * 299.99825 * 14 13 12 36 36 H 1.09002 * 109.47189 * 59.99952 * 14 13 12 37 37 H 1.08999 * 109.47266 * 299.99989 * 15 14 13 38 38 H 1.09002 * 109.47067 * 60.00104 * 15 14 13 39 39 H 0.97004 * 119.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 -0.0005 5 8 4.0896 0.5821 -0.0015 6 6 3.9138 2.9095 0.0000 7 6 3.0855 4.0322 0.1203 8 6 3.6542 5.2886 0.1157 9 7 4.9591 5.4465 -0.0002 10 6 5.7817 4.4258 -0.1103 11 6 5.2987 3.1200 -0.1209 12 7 6.1693 2.0453 -0.2427 13 6 7.5953 2.2810 -0.4820 14 6 8.3253 0.9397 -0.5761 15 6 9.8144 1.1860 -0.8266 16 6 10.5335 -0.1352 -0.9187 17 1 9.9833 -1.0582 -0.8098 18 6 11.8937 -0.1656 -1.1418 19 7 12.5635 0.9583 -1.2749 20 14 12.7850 -1.8033 -1.2567 21 1 11.8121 -2.9102 -1.0745 22 1 13.4290 -1.9241 -2.5893 23 1 13.8226 -1.8774 -0.1969 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0160 3.9158 0.2145 30 1 3.0205 6.1583 0.2077 31 1 6.8434 4.6028 -0.1978 32 1 5.8334 1.1382 -0.1695 33 1 8.0101 2.8640 0.3403 34 1 7.7212 2.8291 -1.4157 35 1 8.1993 0.3912 0.3574 36 1 7.9103 0.3571 -1.3986 37 1 9.9399 1.7342 -1.7603 38 1 10.2296 1.7687 -0.0044 39 1 13.5206 0.9369 -1.4315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:42 Heat of formation + Delta-G solvation = -64.543266 kcal Electronic energy + Delta-G solvation = -20721.004435 eV Core-core repulsion = 17435.161376 eV Total energy + Delta-G solvation = -3285.843059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03883 -39.69063 -37.15741 -36.30189 -33.81212 -32.89176 -31.85960 -31.48226 -29.32068 -26.51962 -25.46231 -23.90362 -23.05742 -21.97652 -21.55206 -20.26883 -18.41461 -17.32632 -16.88168 -16.78044 -16.60092 -15.95306 -15.11522 -15.05413 -14.52971 -14.45640 -14.26396 -14.14973 -13.72610 -13.58410 -13.10150 -12.43759 -12.29637 -12.22127 -12.06612 -11.88690 -11.79318 -11.01231 -10.94846 -10.82668 -10.72029 -10.59454 -10.57031 -9.89599 -9.66912 -9.56035 -9.50956 -9.15240 -8.40257 -7.58386 -6.05008 -4.07626 0.56972 1.29262 2.36161 2.45071 3.28737 3.36251 3.39738 3.44791 3.81751 4.40147 4.42711 4.54983 4.61257 4.64831 4.68041 4.83184 4.95585 5.15668 5.31270 5.32792 5.43370 5.50297 5.52617 5.60409 5.61068 5.77956 5.86170 6.00209 6.13311 6.42303 6.50943 6.61917 6.93285 7.17939 7.47264 7.58954 7.70551 7.82564 7.93594 8.00416 8.35453 8.98913 9.56951 11.06362 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.003442 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.842067 B = 8132.089980 C = 9587.963667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.523 3.477 5 O -0.514 6.514 6 C -0.195 4.195 7 C -0.060 4.060 8 C 0.001 3.999 9 N -0.417 5.417 10 C 0.026 3.974 11 C 0.239 3.761 12 N -0.704 5.704 13 C 0.105 3.895 14 C -0.120 4.120 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.826 4.129 2.954 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.370 3.630 5 O -0.403 6.403 6 C -0.209 4.209 7 C -0.081 4.081 8 C -0.153 4.153 9 N -0.126 5.126 10 C -0.142 4.142 11 C 0.122 3.878 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.161 0.839 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.954 4.659 2.885 23.599 hybrid contribution 0.148 -2.240 -0.064 2.246 sum -22.806 2.419 2.821 23.106 Atomic orbital electron populations 1.21809 0.92462 1.03082 1.03543 1.23075 0.95370 0.79825 1.02954 1.86523 1.23459 1.32571 1.84328 1.20907 0.80610 0.89163 0.72296 1.90599 1.59551 1.42581 1.47547 1.18738 0.92013 0.90950 1.19246 1.22156 1.00617 0.92022 0.93268 1.22290 0.91062 0.96293 1.05688 1.67280 1.04960 1.34549 1.05796 1.22537 1.00457 0.85499 1.05702 1.19045 0.88437 0.90792 0.89556 1.45947 1.07635 1.08112 1.71857 1.21924 0.78212 1.00846 1.00842 1.21861 0.99174 0.93491 1.01290 1.19038 0.87448 0.97451 0.97329 1.21243 0.92896 0.92696 1.49199 0.92576 1.25017 0.97712 0.96424 0.95269 1.69965 1.08077 1.25857 1.49448 0.86523 0.79712 0.84046 0.77657 1.19738 1.20963 1.20963 0.91413 0.90116 0.91427 0.90975 0.91001 0.83919 0.82651 0.81726 0.73578 0.91499 0.91532 0.92546 0.92585 0.96223 0.96203 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.50 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -3.93 9.59 -40.57 -0.39 -4.32 16 4 C 0.52 7.09 7.90 34.55 0.27 7.36 16 5 O -0.51 -8.09 13.60 -19.25 -0.26 -8.35 16 6 C -0.20 -2.59 5.92 -104.51 -0.62 -3.21 16 7 C -0.06 -0.64 9.70 -39.03 -0.38 -1.02 16 8 C 0.00 0.01 11.15 -17.62 -0.20 -0.18 16 9 N -0.42 -5.61 10.32 -13.12 -0.14 -5.74 16 10 C 0.03 0.36 10.49 -17.31 -0.18 0.18 16 11 C 0.24 3.47 6.68 -83.43 -0.56 2.91 16 12 N -0.70 -11.06 5.61 -58.31 -0.33 -11.38 16 13 C 0.10 1.73 4.96 -4.04 -0.02 1.71 16 14 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.14 1.14 7.72 -52.49 -0.41 0.74 16 30 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.17 2.12 6.75 -52.49 -0.35 1.77 16 32 H 0.42 6.95 5.17 -40.82 -0.21 6.73 16 33 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 34 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -31.38 334.26 -7.68 -39.06 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.56 Total: 2.46 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.76 Total: -7.48 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.27 Total: -42.99 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.65 Total: -12.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.38 -7.68 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.479 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds