Wall clock time and date at job start Tue Mar 31 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46993 * 2 1 4 4 C 1.34729 * 116.99994 * 180.02562 * 3 2 1 5 5 O 1.21481 * 119.99700 * 0.02562 * 4 3 2 6 6 C 1.47605 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.40039 * 120.98472 * 5.69942 * 6 4 3 8 8 C 1.37912 * 119.08803 * 180.02562 * 7 6 4 9 9 N 1.31949 * 121.14036 * 0.02657 * 8 7 6 10 10 C 1.31554 * 122.19750 * 359.67617 * 9 8 7 11 11 C 1.39221 * 120.75953 * 0.58706 * 10 9 8 12 12 N 1.38851 * 120.60533 * 179.73207 * 11 10 9 13 13 C 1.46499 * 120.00424 * 354.52045 * 12 11 10 14 14 C 1.53005 * 109.47204 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46874 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47017 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99777 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00108 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47431 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47408 * 120.00012 * 20 18 16 23 23 H 1.48501 * 109.46757 * 239.99494 * 20 18 16 24 24 H 1.08995 * 109.47502 * 59.99925 * 1 2 3 25 25 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46772 * 299.99690 * 1 2 3 27 27 H 1.09005 * 109.46772 * 240.00310 * 2 1 3 28 28 H 1.08995 * 109.47502 * 120.00074 * 2 1 3 29 29 H 1.07995 * 120.45427 * 359.97438 * 7 6 4 30 30 H 1.08000 * 119.42785 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.62360 * 180.31636 * 10 9 8 32 32 H 0.97004 * 120.00238 * 174.52331 * 12 11 10 33 33 H 1.09002 * 109.47086 * 60.00078 * 13 12 11 34 34 H 1.08999 * 109.46916 * 300.00166 * 13 12 11 35 35 H 1.08999 * 109.47165 * 299.99825 * 14 13 12 36 36 H 1.09002 * 109.47189 * 59.99952 * 14 13 12 37 37 H 1.08999 * 109.47266 * 299.99989 * 15 14 13 38 38 H 1.09002 * 109.47067 * 60.00104 * 15 14 13 39 39 H 0.97004 * 119.99956 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5455 -0.0005 5 8 4.0896 0.5821 -0.0015 6 6 3.9138 2.9095 0.0000 7 6 3.0855 4.0322 0.1203 8 6 3.6542 5.2886 0.1157 9 7 4.9591 5.4465 -0.0002 10 6 5.7817 4.4258 -0.1103 11 6 5.2987 3.1200 -0.1209 12 7 6.1693 2.0453 -0.2427 13 6 7.5953 2.2810 -0.4820 14 6 8.3253 0.9397 -0.5761 15 6 9.8144 1.1860 -0.8266 16 6 10.5335 -0.1352 -0.9187 17 1 9.9833 -1.0582 -0.8098 18 6 11.8937 -0.1656 -1.1418 19 7 12.5635 0.9583 -1.2749 20 14 12.7850 -1.8033 -1.2567 21 1 11.8121 -2.9102 -1.0745 22 1 13.4290 -1.9241 -2.5893 23 1 13.8226 -1.8774 -0.1969 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0160 3.9158 0.2145 30 1 3.0205 6.1583 0.2077 31 1 6.8434 4.6028 -0.1978 32 1 5.8334 1.1382 -0.1695 33 1 8.0101 2.8640 0.3403 34 1 7.7212 2.8291 -1.4157 35 1 8.1993 0.3912 0.3574 36 1 7.9103 0.3571 -1.3986 37 1 9.9399 1.7342 -1.7603 38 1 10.2296 1.7687 -0.0044 39 1 13.5206 0.9369 -1.4315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:40 Heat of formation + Delta-G solvation = -83.317477 kcal Electronic energy + Delta-G solvation = -20721.818546 eV Core-core repulsion = 17435.161376 eV Total energy + Delta-G solvation = -3286.657170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.04557 -40.66853 -38.22946 -37.49687 -35.62179 -34.01482 -33.32544 -32.32834 -30.62337 -28.18693 -26.42753 -25.39087 -23.97444 -23.10442 -22.74313 -21.80011 -19.37691 -18.57647 -18.33588 -17.90666 -17.69665 -17.24947 -16.50546 -16.46394 -15.99039 -15.48087 -15.40200 -15.10510 -14.77832 -14.46139 -14.35588 -13.81365 -13.73314 -13.63811 -13.04739 -12.99826 -12.86206 -12.57022 -12.50862 -12.38607 -12.03232 -11.92464 -11.60034 -11.51498 -11.46592 -11.21833 -10.68610 -10.57961 -10.53321 -8.68676 -8.22788 -6.33427 -0.43252 0.31505 1.38610 1.39089 1.41235 1.48505 1.52172 2.24699 2.40762 2.84502 3.10916 3.49959 3.61419 3.72905 3.84770 3.98889 4.04156 4.06759 4.14623 4.26855 4.33922 4.49971 4.60738 4.73302 4.87548 4.89096 4.91884 4.92444 4.96213 5.07737 5.10894 5.33028 5.46601 5.57314 5.67638 5.80936 6.00470 6.22370 6.43648 6.68024 6.82598 7.01493 7.35786 8.89146 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.003442 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.842067 B = 8132.089980 C = 9587.963667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.346 6.346 4 C 0.523 3.477 5 O -0.541 6.541 6 C -0.202 4.202 7 C -0.046 4.046 8 C 0.010 3.990 9 N -0.434 5.434 10 C 0.012 3.988 11 C 0.220 3.780 12 N -0.715 5.715 13 C 0.120 3.880 14 C -0.105 4.105 15 C 0.029 3.971 16 C -0.546 4.546 17 H 0.057 0.943 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.176 0.824 30 H 0.193 0.807 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.000 1.000 38 H 0.001 0.999 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.092 4.089 3.207 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 O -0.261 6.261 4 C 0.371 3.629 5 O -0.432 6.432 6 C -0.216 4.216 7 C -0.066 4.066 8 C -0.145 4.145 9 N -0.143 5.143 10 C -0.154 4.154 11 C 0.105 3.895 12 N -0.348 5.348 13 C -0.003 4.003 14 C -0.143 4.143 15 C -0.009 4.009 16 C -0.584 4.584 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.194 0.806 30 H 0.210 0.790 31 H 0.182 0.818 32 H 0.258 0.742 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.248 4.638 3.140 25.862 hybrid contribution 0.676 -2.158 -0.125 2.265 sum -24.572 2.480 3.015 24.880 Atomic orbital electron populations 1.21825 0.89785 1.04489 1.04021 1.23377 0.97396 0.78662 1.02663 1.86521 1.21934 1.34016 1.83676 1.21043 0.81245 0.88985 0.71663 1.90586 1.60332 1.43462 1.48860 1.18992 0.91886 0.91798 1.18914 1.22520 1.01936 0.90911 0.91262 1.22970 0.90520 0.97726 1.03318 1.67329 1.06186 1.34449 1.06347 1.22541 1.00794 0.85495 1.06565 1.19172 0.88931 0.90554 0.90826 1.45693 1.07063 1.08269 1.73737 1.21584 0.78942 0.98511 1.01287 1.21571 0.96309 0.95508 1.00927 1.18909 0.90533 0.95899 0.95542 1.21686 0.93681 0.93803 1.49207 0.92505 1.25932 0.98652 1.00282 0.94761 1.70082 1.08546 1.28158 1.50216 0.85420 0.78411 0.79451 0.77896 1.18897 1.20257 1.20252 0.90998 0.88254 0.90818 0.91465 0.91252 0.80621 0.79010 0.81814 0.74178 0.91028 0.91272 0.92738 0.92864 0.98126 0.98049 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 10.29 71.98 0.74 -0.59 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.11 9.59 -56.39 -0.54 -7.65 16 4 C 0.52 13.74 7.90 70.29 0.56 14.29 16 5 O -0.54 -17.14 13.60 19.90 0.27 -16.87 16 6 C -0.20 -5.10 5.92 -19.79 -0.12 -5.22 16 7 C -0.05 -0.85 9.70 22.63 0.22 -0.63 16 8 C 0.01 0.19 11.15 84.60 0.94 1.14 16 9 N -0.43 -11.00 10.32 -195.42 -2.02 -13.02 16 10 C 0.01 0.34 10.49 84.97 0.89 1.23 16 11 C 0.22 6.34 6.68 38.84 0.26 6.60 16 12 N -0.71 -22.88 5.61 -338.38 -1.90 -24.78 16 13 C 0.12 4.08 4.96 86.38 0.43 4.51 16 14 C -0.11 -4.34 5.27 30.60 0.16 -4.18 16 15 C 0.03 1.50 4.97 29.85 0.15 1.65 16 16 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.00 0.10 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 20 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.18 2.04 7.72 -2.91 -0.02 2.02 16 30 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 31 H 0.16 4.33 6.75 -2.91 -0.02 4.31 16 32 H 0.41 14.06 5.17 -92.71 -0.48 13.58 16 33 H 0.07 2.33 7.75 -2.39 -0.02 2.31 16 34 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -68.24 334.26 4.07 -64.17 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.57 Total: 17.94 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.37 Total: -10.33 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.63 Total: -93.79 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.27 Total: -24.53 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.24 4.07 -64.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.143 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds