Wall clock time and date at job start Tue Mar 31 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99712 * 2 1 4 4 C 1.39667 * 120.00153 * 179.97438 * 2 1 3 5 5 C 1.38976 * 120.04728 * 179.97438 * 4 2 1 6 6 C 1.38105 * 120.03553 * 180.02562 * 5 4 2 7 7 C 1.38217 * 120.13009 * 359.97438 * 6 5 4 8 8 C 1.38763 * 120.09397 * 0.02562 * 7 6 5 9 9 O 1.35893 * 120.02343 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99846 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.47462 * 179.97438 * 10 9 8 12 12 O 1.21290 * 119.99639 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00173 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99912 * 359.97438 * 13 11 10 15 15 C 1.37099 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.07996 * 119.99944 * 24.38990 * 15 13 11 17 17 C 1.38946 * 119.99662 * 204.39454 * 15 13 11 18 18 N 1.31408 * 120.00412 * 12.65535 * 17 15 13 19 19 Si 1.86802 * 119.99892 * 192.65369 * 17 15 13 20 20 H 1.48504 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47138 * 119.99934 * 19 17 15 22 22 H 1.48498 * 109.47206 * 240.00246 * 19 17 15 23 23 C 1.38621 * 119.96206 * 0.02562 * 8 7 6 24 24 H 1.09005 * 109.47164 * 269.99970 * 1 2 3 25 25 H 1.09002 * 109.47527 * 30.00130 * 1 2 3 26 26 H 1.08998 * 109.47365 * 150.00432 * 1 2 3 27 27 H 1.08994 * 109.47074 * 269.99898 * 3 2 1 28 28 H 1.08994 * 109.47344 * 29.99931 * 3 2 1 29 29 H 1.09000 * 109.47120 * 150.00057 * 3 2 1 30 30 H 1.08004 * 119.97774 * 0.02562 * 5 4 2 31 31 H 1.08001 * 119.93593 * 179.97438 * 6 5 4 32 32 H 1.08007 * 119.95380 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47269 * 300.00312 * 10 9 8 34 34 H 1.09006 * 109.46759 * 59.99976 * 10 9 8 35 35 H 1.08996 * 109.46538 * 85.86547 * 14 13 11 36 36 H 1.09000 * 109.47161 * 205.86412 * 14 13 11 37 37 H 1.08999 * 109.47270 * 325.86752 * 14 13 11 38 38 H 0.97005 * 120.00225 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05992 * 179.72822 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0005 5 6 3.5531 -1.2106 0.0000 6 6 4.2434 -2.4068 0.0000 7 6 3.5548 -3.6052 0.0011 8 6 2.1672 -3.6104 0.0016 9 8 1.4916 -4.7895 0.0021 10 6 2.2740 -5.9854 0.0027 11 6 1.3600 -7.1837 0.0038 12 8 0.1571 -7.0288 0.0037 13 7 1.8794 -8.4273 0.0050 14 6 3.3324 -8.6143 0.0046 15 6 1.0479 -9.5174 0.0056 16 1 0.0433 -9.4304 -0.3811 17 6 1.4978 -10.7340 0.5037 18 7 2.6136 -10.7885 1.1956 19 14 0.5163 -12.2921 0.1899 20 1 -0.6922 -11.9636 -0.6081 21 1 1.3548 -13.2632 -0.5577 22 1 0.1057 -12.8880 1.4866 23 6 1.4704 -2.4120 0.0005 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 2.3790 1.5834 -1.0276 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0935 -0.2755 -0.0004 31 1 5.3234 -2.4058 -0.0008 32 1 4.0975 -4.5390 0.0015 33 1 2.9029 -6.0086 -0.8873 34 1 2.9029 -6.0077 0.8927 35 1 3.7026 -8.5861 1.0294 36 1 3.5745 -9.5784 -0.4427 37 1 3.8011 -7.8177 -0.5731 38 1 2.9279 -11.6380 1.5430 39 1 0.3904 -2.4142 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180615940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:09 Heat of formation + Delta-G solvation = -17.882096 kcal Electronic energy + Delta-G solvation = -21061.288143 eV Core-core repulsion = 17777.468464 eV Total energy + Delta-G solvation = -3283.819678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.06164 -38.70203 -37.61647 -35.51579 -34.61162 -31.73718 -30.83179 -29.59360 -28.53796 -27.58353 -26.10786 -24.90583 -24.05354 -22.06139 -20.87086 -19.01267 -18.16928 -16.91667 -16.32512 -16.03366 -15.78191 -15.61553 -15.19734 -15.14106 -14.74408 -14.22178 -13.79137 -13.72060 -13.67468 -12.82166 -12.78995 -12.46285 -12.40334 -12.14297 -12.03049 -11.69010 -11.45912 -11.33929 -11.30726 -10.91845 -10.76199 -10.66462 -10.32990 -10.28302 -9.71782 -9.05327 -8.41177 -8.09546 -7.71317 -7.31905 -6.35980 -3.92607 1.61436 1.73407 2.92751 3.14190 3.24609 3.30824 3.49517 3.80431 4.00266 4.17534 4.81970 4.85156 4.98664 5.04981 5.07277 5.10174 5.26337 5.35152 5.38265 5.45285 5.48443 5.58773 5.61398 5.66284 5.74287 5.78525 5.94610 6.24775 6.29712 6.52159 6.62228 6.73152 6.77751 7.12932 7.17746 7.40845 7.54413 7.74117 8.10839 8.45109 9.14421 9.34761 9.90920 10.69227 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041864 B = 0.003238 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.673098 B = 8645.330444 C = 9225.555771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.639 5.639 3 C 0.096 3.904 4 C 0.246 3.754 5 C -0.241 4.241 6 C -0.035 4.035 7 C -0.267 4.267 8 C 0.183 3.817 9 O -0.287 6.287 10 C 0.053 3.947 11 C 0.448 3.552 12 O -0.568 6.568 13 N -0.443 5.443 14 C 0.107 3.893 15 C -0.305 4.305 16 H 0.100 0.900 17 C 0.031 3.969 18 N -0.882 5.882 19 Si 0.928 3.072 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.233 4.233 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.268 0.732 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 18.800 -2.268 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C -0.047 4.047 4 C 0.144 3.856 5 C -0.263 4.263 6 C -0.054 4.054 7 C -0.287 4.287 8 C 0.135 3.865 9 O -0.198 6.198 10 C -0.025 4.025 11 C 0.235 3.765 12 O -0.451 6.451 13 N -0.164 5.164 14 C -0.036 4.036 15 C -0.432 4.432 16 H 0.118 0.882 17 C -0.173 4.173 18 N -0.521 5.521 19 Si 0.755 3.245 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.256 4.256 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.227 18.838 -2.178 19.429 hybrid contribution 0.093 -0.888 0.023 0.893 sum 4.320 17.950 -2.155 18.588 Atomic orbital electron populations 1.21656 0.79463 1.02748 1.01296 1.46266 1.05044 1.03017 1.80759 1.21594 0.97264 0.84855 1.00985 1.17406 0.90865 0.84915 0.92393 1.20482 0.91833 0.98427 1.15554 1.20610 0.99113 0.91288 0.94353 1.21100 0.93017 0.99372 1.15222 1.18812 0.90377 0.85791 0.91531 1.86175 1.34876 1.11540 1.87184 1.22601 0.94206 0.83567 1.02149 1.19565 0.88660 0.83496 0.84776 1.90556 1.15047 1.85149 1.54337 1.43476 1.05997 1.03713 1.63173 1.21555 0.80883 1.00416 1.00784 1.19705 0.98184 0.86313 1.39045 0.88222 1.25369 0.97045 0.99838 0.95016 1.69994 1.22273 1.26625 1.33188 0.85827 0.79646 0.80773 0.78264 1.19135 1.20606 1.20686 1.19760 1.00108 0.88587 1.17155 0.93333 0.91737 0.90886 0.93554 0.91748 0.91254 0.86290 0.86061 0.85638 0.90547 0.90225 0.92712 0.90288 0.95662 0.92200 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.19 59.84 0.61 1.45 16 2 N -0.64 -6.93 3.41 -187.58 -0.64 -7.57 16 3 C 0.10 0.73 10.19 59.85 0.61 1.34 16 4 C 0.25 3.31 6.55 -83.81 -0.55 2.76 16 5 C -0.24 -2.96 9.20 -39.36 -0.36 -3.32 16 6 C -0.03 -0.44 10.03 -39.64 -0.40 -0.84 16 7 C -0.27 -3.96 9.04 -39.39 -0.36 -4.31 16 8 C 0.18 3.16 6.68 -39.25 -0.26 2.90 16 9 O -0.29 -5.94 9.67 -39.31 -0.38 -6.32 16 10 C 0.05 1.06 3.83 36.01 0.14 1.20 16 11 C 0.45 11.44 7.70 -10.99 -0.08 11.36 16 12 O -0.57 -16.78 16.21 -14.36 -0.23 -17.02 16 13 N -0.44 -11.49 3.01 -122.19 -0.37 -11.86 16 14 C 0.11 2.35 8.44 59.85 0.51 2.86 16 15 C -0.30 -8.57 9.24 -14.93 -0.14 -8.71 16 16 H 0.10 2.94 7.45 -52.49 -0.39 2.55 16 17 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 18 N -0.88 -23.38 10.84 55.50 0.60 -22.78 16 19 Si 0.93 20.73 29.57 -169.99 -5.03 15.71 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.23 -3.67 9.15 -39.24 -0.36 -4.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.07 0.73 6.19 -51.93 -0.32 0.40 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 29 H 0.07 0.49 6.19 -51.93 -0.32 0.17 16 30 H 0.12 1.17 6.14 -52.48 -0.32 0.85 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.72 6.29 -52.48 -0.33 1.39 16 33 H 0.08 1.32 6.92 -51.93 -0.36 0.96 16 34 H 0.08 1.43 7.63 -51.93 -0.40 1.03 16 35 H 0.05 1.22 7.83 -51.93 -0.41 0.81 16 36 H 0.08 1.82 6.80 -51.93 -0.35 1.47 16 37 H 0.02 0.44 6.61 -51.93 -0.34 0.10 16 38 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.13 1.99 6.14 -52.49 -0.32 1.67 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -33.29 322.29 -7.03 -40.32 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.11 Total: 1.29 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.73 Total: 3.38 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.41 Total: -42.21 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.61 Total: -23.33 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.29 -7.03 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180615940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.435 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds