Wall clock time and date at job start Tue Mar 31 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99712 * 2 1 4 4 C 1.39667 * 120.00153 * 179.97438 * 2 1 3 5 5 C 1.38976 * 120.04728 * 179.97438 * 4 2 1 6 6 C 1.38105 * 120.03553 * 180.02562 * 5 4 2 7 7 C 1.38217 * 120.13009 * 359.97438 * 6 5 4 8 8 C 1.38763 * 120.09397 * 0.02562 * 7 6 5 9 9 O 1.35893 * 120.02343 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99846 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.47462 * 179.97438 * 10 9 8 12 12 O 1.21290 * 119.99639 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00173 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99912 * 359.97438 * 13 11 10 15 15 C 1.37099 * 120.00062 * 180.02562 * 13 11 10 16 16 H 1.07996 * 119.99944 * 24.38990 * 15 13 11 17 17 C 1.38946 * 119.99662 * 204.39454 * 15 13 11 18 18 N 1.31408 * 120.00412 * 12.65535 * 17 15 13 19 19 Si 1.86802 * 119.99892 * 192.65369 * 17 15 13 20 20 H 1.48504 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47138 * 119.99934 * 19 17 15 22 22 H 1.48498 * 109.47206 * 240.00246 * 19 17 15 23 23 C 1.38621 * 119.96206 * 0.02562 * 8 7 6 24 24 H 1.09005 * 109.47164 * 269.99970 * 1 2 3 25 25 H 1.09002 * 109.47527 * 30.00130 * 1 2 3 26 26 H 1.08998 * 109.47365 * 150.00432 * 1 2 3 27 27 H 1.08994 * 109.47074 * 269.99898 * 3 2 1 28 28 H 1.08994 * 109.47344 * 29.99931 * 3 2 1 29 29 H 1.09000 * 109.47120 * 150.00057 * 3 2 1 30 30 H 1.08004 * 119.97774 * 0.02562 * 5 4 2 31 31 H 1.08001 * 119.93593 * 179.97438 * 6 5 4 32 32 H 1.08007 * 119.95380 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47269 * 300.00312 * 10 9 8 34 34 H 1.09006 * 109.46759 * 59.99976 * 10 9 8 35 35 H 1.08996 * 109.46538 * 85.86547 * 14 13 11 36 36 H 1.09000 * 109.47161 * 205.86412 * 14 13 11 37 37 H 1.08999 * 109.47270 * 325.86752 * 14 13 11 38 38 H 0.97005 * 120.00225 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05992 * 179.72822 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1633 -1.2095 0.0005 5 6 3.5531 -1.2106 0.0000 6 6 4.2434 -2.4068 0.0000 7 6 3.5548 -3.6052 0.0011 8 6 2.1672 -3.6104 0.0016 9 8 1.4916 -4.7895 0.0021 10 6 2.2740 -5.9854 0.0027 11 6 1.3600 -7.1837 0.0038 12 8 0.1571 -7.0288 0.0037 13 7 1.8794 -8.4273 0.0050 14 6 3.3324 -8.6143 0.0046 15 6 1.0479 -9.5174 0.0056 16 1 0.0433 -9.4304 -0.3811 17 6 1.4978 -10.7340 0.5037 18 7 2.6136 -10.7885 1.1956 19 14 0.5163 -12.2921 0.1899 20 1 -0.6922 -11.9636 -0.6081 21 1 1.3548 -13.2632 -0.5577 22 1 0.1057 -12.8880 1.4866 23 6 1.4704 -2.4120 0.0005 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 2.3790 1.5834 -1.0276 28 1 1.6083 2.0284 0.5138 29 1 3.1498 1.1385 0.5138 30 1 4.0935 -0.2755 -0.0004 31 1 5.3234 -2.4058 -0.0008 32 1 4.0975 -4.5390 0.0015 33 1 2.9029 -6.0086 -0.8873 34 1 2.9029 -6.0077 0.8927 35 1 3.7026 -8.5861 1.0294 36 1 3.5745 -9.5784 -0.4427 37 1 3.8011 -7.8177 -0.5731 38 1 2.9279 -11.6380 1.5430 39 1 0.3904 -2.4142 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180615940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:09 Heat of formation + Delta-G solvation = -38.522835 kcal Electronic energy + Delta-G solvation = -21062.183192 eV Core-core repulsion = 17777.468464 eV Total energy + Delta-G solvation = -3284.714728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33122 -40.30291 -39.01907 -36.77490 -36.38675 -33.77470 -31.93300 -30.60177 -29.85462 -28.69270 -27.90304 -26.25711 -25.51882 -23.11889 -22.09900 -20.69302 -19.36456 -18.92255 -17.85688 -17.34161 -17.24974 -16.88777 -16.55932 -16.13210 -15.97505 -15.91335 -15.45220 -15.19040 -14.67204 -14.26994 -13.86664 -13.63452 -13.42672 -13.37914 -13.25039 -13.16750 -13.07378 -12.91596 -12.67210 -12.46442 -12.28495 -12.11656 -12.04699 -11.75117 -11.05128 -10.66360 -10.43645 -9.74515 -9.27362 -8.39177 -8.23503 -6.05298 0.55292 0.65597 1.34689 1.40771 1.54363 1.82833 1.89407 2.24840 2.41300 2.93539 3.02912 3.18464 3.79168 3.98452 4.01676 4.17897 4.19536 4.24012 4.34268 4.39499 4.53123 4.56561 4.60629 4.65620 4.81927 4.88542 4.93590 4.96020 4.98795 5.29180 5.32735 5.41369 5.47229 5.62452 5.69917 6.02355 6.30849 6.38355 6.48516 6.58921 7.10020 7.34444 7.91228 8.64285 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041864 B = 0.003238 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.673098 B = 8645.330444 C = 9225.555771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.642 5.642 3 C 0.089 3.911 4 C 0.242 3.758 5 C -0.235 4.235 6 C -0.029 4.029 7 C -0.277 4.277 8 C 0.150 3.850 9 O -0.323 6.323 10 C 0.071 3.929 11 C 0.432 3.568 12 O -0.625 6.625 13 N -0.453 5.453 14 C 0.113 3.887 15 C -0.348 4.348 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.892 5.892 19 Si 0.993 3.007 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.275 1.275 23 C -0.257 4.257 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.276 0.724 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 20.243 -2.363 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.353 5.353 3 C -0.052 4.052 4 C 0.139 3.861 5 C -0.258 4.258 6 C -0.048 4.048 7 C -0.297 4.297 8 C 0.104 3.896 9 O -0.236 6.236 10 C -0.007 4.007 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.173 5.173 14 C -0.030 4.030 15 C -0.475 4.475 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.530 5.530 19 Si 0.816 3.184 20 H -0.200 1.200 21 H -0.185 1.185 22 H -0.200 1.200 23 C -0.280 4.280 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.609 20.316 -2.269 21.484 hybrid contribution -0.617 -1.189 0.082 1.342 sum 5.992 19.127 -2.187 20.163 Atomic orbital electron populations 1.21755 0.78981 1.03271 1.01609 1.46581 1.05738 1.03272 1.79669 1.21837 0.97688 0.83642 1.02069 1.17590 0.91711 0.85074 0.91743 1.20889 0.91313 0.99783 1.13778 1.21026 1.00835 0.90354 0.92575 1.21281 0.91866 1.00967 1.15609 1.19115 0.91723 0.84713 0.94062 1.86102 1.36446 1.12660 1.88408 1.22364 0.92587 0.81409 1.04376 1.20547 0.88870 0.84938 0.83553 1.90501 1.17738 1.86205 1.56709 1.43750 1.07425 1.03600 1.62526 1.21596 0.78752 1.01446 1.01172 1.19646 0.98079 0.88289 1.41533 0.91231 1.26122 0.98018 1.01973 0.94002 1.70047 1.22698 1.27826 1.32384 0.84895 0.78180 0.77058 0.78288 1.19977 1.18546 1.20019 1.19869 0.99893 0.89488 1.18766 0.93133 0.89081 0.92503 0.92519 0.89805 0.90439 0.83237 0.82555 0.84607 0.87576 0.88170 0.93174 0.91696 0.91051 0.91376 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.19 127.77 1.30 2.82 16 2 N -0.64 -12.75 3.41 -747.37 -2.55 -15.30 16 3 C 0.09 1.07 10.19 127.77 1.30 2.37 16 4 C 0.24 6.21 6.55 38.20 0.25 6.46 16 5 C -0.24 -5.06 9.20 22.42 0.21 -4.86 16 6 C -0.03 -0.64 10.03 22.23 0.22 -0.42 16 7 C -0.28 -7.76 9.04 22.39 0.20 -7.56 16 8 C 0.15 5.26 6.68 22.49 0.15 5.41 16 9 O -0.32 -13.88 9.67 -73.32 -0.71 -14.59 16 10 C 0.07 2.81 3.83 71.24 0.27 3.09 16 11 C 0.43 22.83 7.70 87.66 0.68 23.50 16 12 O -0.62 -39.12 16.21 15.97 0.26 -38.86 16 13 N -0.45 -24.07 3.01 -658.90 -1.98 -26.06 16 14 C 0.11 4.87 8.44 127.77 1.08 5.95 16 15 C -0.35 -20.26 9.24 84.04 0.78 -19.49 16 16 H 0.07 4.37 7.45 -2.91 -0.02 4.35 16 17 C 0.00 0.07 5.04 84.93 0.43 0.50 16 18 N -0.89 -46.91 10.84 21.66 0.23 -46.67 16 19 Si 0.99 42.63 29.57 68.60 2.03 44.66 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.26 -8.28 9.15 22.49 0.21 -8.07 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 26 H 0.06 1.18 6.19 -2.39 -0.01 1.16 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.70 8.07 -2.39 -0.02 0.68 16 29 H 0.08 0.81 6.19 -2.39 -0.01 0.79 16 30 H 0.15 2.26 6.14 -2.91 -0.02 2.24 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.14 3.39 6.29 -2.91 -0.02 3.38 16 33 H 0.11 3.51 6.92 -2.39 -0.02 3.49 16 34 H 0.10 3.51 7.63 -2.38 -0.02 3.49 16 35 H 0.05 2.19 7.83 -2.39 -0.02 2.17 16 36 H 0.06 2.96 6.80 -2.39 -0.02 2.94 16 37 H 0.07 2.37 6.61 -2.39 -0.02 2.36 16 38 H 0.28 13.48 8.31 -92.70 -0.77 12.71 16 39 H 0.12 3.90 6.14 -2.91 -0.02 3.88 16 Total: -1.00 -75.99 322.29 5.41 -70.57 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.06 Total: 16.55 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 7.07 Total: 9.69 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -4.30 Total: -88.02 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -0.45 Total: -53.45 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -75.99 5.41 -70.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180615940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.052 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds