Wall clock time and date at job start Tue Mar 31 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35900 * 117.00086 * 2 1 4 4 C 1.38740 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94681 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05338 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94136 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.46992 * 89.99944 * 7 6 5 9 9 C 1.34779 * 119.99872 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00297 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99768 * 180.02562 * 9 8 7 12 12 C 1.46491 * 120.00138 * 0.02562 * 11 9 8 13 13 C 1.46503 * 119.99449 * 179.97438 * 11 9 8 14 14 C 1.50703 * 109.46824 * 90.00148 * 13 11 9 15 15 H 1.07998 * 119.99843 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99783 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99687 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00010 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47013 * 90.00254 * 18 16 14 20 20 H 1.48504 * 109.46944 * 210.00080 * 18 16 14 21 21 H 1.48500 * 109.47314 * 329.99945 * 18 16 14 22 22 C 1.38261 * 120.11222 * 0.25270 * 6 5 4 23 23 C 1.38144 * 120.05633 * 359.45047 * 22 6 5 24 24 H 1.09000 * 109.47106 * 300.00137 * 1 2 3 25 25 H 1.09000 * 109.47348 * 59.99680 * 1 2 3 26 26 H 1.08993 * 109.47158 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.02343 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.97195 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47060 * 210.00157 * 7 6 5 30 30 H 1.09001 * 109.47380 * 330.00244 * 7 6 5 31 31 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 32 32 H 1.08999 * 109.47474 * 89.99844 * 12 11 9 33 33 H 1.09007 * 109.47434 * 209.99927 * 12 11 9 34 34 H 1.09004 * 109.47368 * 330.00063 * 12 11 9 35 35 H 1.09003 * 109.46641 * 209.99914 * 13 11 9 36 36 H 1.08997 * 109.47376 * 330.00245 * 13 11 9 37 37 H 0.97000 * 119.99596 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.97190 * 179.70663 * 22 6 5 39 39 H 1.08001 * 120.03140 * 180.25189 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 7 4.2073 5.4550 -1.3781 9 6 4.8083 6.6362 -1.6233 10 8 5.1675 7.3392 -0.6986 11 7 5.0113 7.0381 -2.8937 12 6 4.5781 6.1914 -4.0079 13 6 5.6641 8.3222 -3.1602 14 6 7.1544 8.1183 -3.2531 15 1 7.5733 7.1311 -3.1259 16 6 7.9830 9.1922 -3.5005 17 7 9.2835 9.0142 -3.5820 18 14 7.2583 10.8997 -3.7213 19 1 7.1827 11.5795 -2.4032 20 1 8.1211 11.6891 -4.6366 21 1 5.8951 10.7880 -4.2996 22 6 1.9212 3.6047 0.0080 23 6 1.2916 2.3751 0.0012 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 4.0208 0.3799 -0.0014 28 1 5.1346 2.5749 -0.0008 29 1 3.3584 5.7457 0.5177 30 1 4.9444 4.9376 0.5160 31 1 3.9204 4.8944 -2.1159 32 1 3.5550 6.4480 -4.2829 33 1 5.2351 6.3514 -4.8628 34 1 4.6217 5.1445 -3.7071 35 1 5.2938 8.7297 -4.1010 36 1 5.4423 9.0176 -2.3507 37 1 9.8664 9.7697 -3.7564 38 1 1.3343 4.5114 0.0140 39 1 0.2130 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185505568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:06 Heat of formation + Delta-G solvation = -55.105827 kcal Electronic energy + Delta-G solvation = -20846.095192 eV Core-core repulsion = 17560.661371 eV Total energy + Delta-G solvation = -3285.433821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.30052 -40.82684 -38.72376 -36.67985 -35.69367 -34.59094 -32.14903 -31.78272 -30.17659 -28.45991 -27.43227 -26.31314 -24.14590 -23.60903 -22.16166 -20.95850 -19.18667 -19.11214 -18.90472 -17.49580 -17.29096 -16.63583 -16.54959 -16.33025 -16.05445 -15.40140 -15.26309 -14.90499 -14.64514 -14.48289 -14.41266 -14.09071 -13.63728 -13.54518 -13.36261 -13.20623 -12.84538 -12.78210 -12.44173 -12.39519 -12.00506 -11.97805 -11.74614 -11.72011 -11.12707 -10.79955 -10.14428 -9.98574 -9.25463 -9.18298 -8.31034 -6.35791 0.27377 0.36842 1.35362 1.40379 1.48659 1.90884 2.31616 2.34369 2.36845 2.75591 3.03389 3.28662 3.72493 3.81609 3.94610 4.20981 4.32748 4.38965 4.42091 4.42633 4.58196 4.63358 4.68684 4.75853 4.77605 4.82462 4.92325 4.96276 5.07466 5.23089 5.33625 5.48628 5.54940 5.62071 5.63743 5.75590 6.08188 6.32284 6.42769 6.65214 7.15560 7.26159 7.72803 8.86296 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.003052 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.380902 B = 9173.492079 C = 9239.994599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.125 3.875 4 C -0.164 4.164 5 C -0.064 4.064 6 C -0.146 4.146 7 C 0.187 3.813 8 N -0.730 5.730 9 C 0.694 3.306 10 O -0.640 6.640 11 N -0.624 5.624 12 C 0.082 3.918 13 C 0.240 3.760 14 C -0.535 4.535 15 H 0.025 0.975 16 C 0.008 3.992 17 N -0.948 5.948 18 Si 0.951 3.049 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.235 1.235 22 C -0.058 4.058 23 C -0.208 4.208 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.407 0.593 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.141 0.859 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.406 -17.348 4.049 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.079 3.921 4 C -0.182 4.182 5 C -0.083 4.083 6 C -0.147 4.147 7 C 0.063 3.937 8 N -0.389 5.389 9 C 0.395 3.605 10 O -0.522 6.522 11 N -0.359 5.359 12 C -0.061 4.061 13 C 0.117 3.883 14 C -0.574 4.574 15 H 0.043 0.957 16 C -0.190 4.190 17 N -0.588 5.588 18 Si 0.774 3.226 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.158 1.158 22 C -0.077 4.077 23 C -0.226 4.226 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.244 0.756 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.928 -16.962 4.653 28.110 hybrid contribution 0.353 0.569 -0.270 0.722 sum -21.575 -16.393 4.384 27.449 Atomic orbital electron populations 1.23360 0.76353 1.05608 1.02398 1.86059 1.23568 1.26799 1.88430 1.19266 0.92555 0.84812 0.95437 1.20585 0.91922 0.98789 1.06924 1.21034 1.00451 0.90951 0.95827 1.19654 0.94257 0.93535 1.07212 1.19880 0.99337 0.92372 0.82078 1.45162 1.64855 1.19595 1.09309 1.16155 0.78869 0.82142 0.83306 1.90837 1.59380 1.57377 1.44638 1.47075 1.61825 1.22509 1.04496 1.21844 1.00685 0.94152 0.89397 1.19247 0.90705 0.81922 0.96442 1.21614 0.92128 0.94918 1.48734 0.95680 1.25897 0.94975 1.03924 0.94191 1.70064 1.04686 1.33126 1.50974 0.85666 0.80060 0.78275 0.78615 1.20248 1.20035 1.15807 1.21063 0.93297 0.98170 0.95166 1.21451 1.01280 0.91441 1.08475 0.91596 0.91567 0.86426 0.84267 0.84852 0.91358 0.92662 0.75553 0.90347 0.91153 0.90435 0.92781 0.96253 0.92317 0.84155 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.61 10.50 -92.42 -0.97 -6.58 16 3 C 0.12 2.27 6.69 22.51 0.15 2.42 16 4 C -0.16 -3.14 9.99 22.37 0.22 -2.92 16 5 C -0.06 -1.31 9.69 22.25 0.22 -1.10 16 6 C -0.15 -3.10 5.25 -19.85 -0.10 -3.21 16 7 C 0.19 5.16 5.80 85.63 0.50 5.66 16 8 N -0.73 -22.74 5.41 -482.28 -2.61 -25.35 16 9 C 0.69 30.00 8.28 179.05 1.48 31.49 16 10 O -0.64 -34.24 15.92 -4.00 -0.06 -34.31 16 11 N -0.62 -26.38 2.86 -869.29 -2.48 -28.87 16 12 C 0.08 2.41 10.20 127.77 1.30 3.71 16 13 C 0.24 11.99 4.23 85.63 0.36 12.36 16 14 C -0.54 -32.34 9.94 25.60 0.25 -32.08 16 15 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 16 C 0.01 0.46 5.47 84.66 0.46 0.92 16 17 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 18 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 22 C -0.06 -1.03 9.69 22.25 0.22 -0.81 16 23 C -0.21 -3.25 9.04 22.37 0.20 -3.05 16 24 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 25 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 26 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 27 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 31 H 0.41 10.15 6.19 -92.71 -0.57 9.58 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 34 H 0.08 1.88 6.36 -2.38 -0.02 1.86 16 35 H 0.05 2.44 7.13 -2.39 -0.02 2.42 16 36 H 0.02 1.04 6.85 -2.39 -0.02 1.02 16 37 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.15 1.55 6.30 -2.91 -0.02 1.54 16 Total: -1.00 -81.53 330.17 2.86 -78.67 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.43 Total: 15.63 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.38 Total: 14.64 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.80 Total: -115.04 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.03 Total: -40.89 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -81.53 2.86 -78.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185505568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.563 kcal (2) G-P(sol) polarization free energy of solvation -81.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds