Wall clock time and date at job start Tue Mar 31 2020 01:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.46895 * 2 1 4 4 C 1.34232 * 116.99630 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99636 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46662 * 180.02562 * 6 4 3 8 8 C 1.46901 * 111.00524 * 66.04769 * 7 6 4 9 9 C 1.50698 * 109.47538 * 193.95392 * 8 7 6 10 10 H 1.08007 * 119.99682 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00475 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99704 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47159 * 60.00601 * 13 11 9 15 15 H 1.48505 * 109.47271 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47548 * 300.00357 * 13 11 9 17 17 C 1.46906 * 110.99746 * 189.99888 * 7 6 4 18 18 C 1.50703 * 109.47109 * 169.99823 * 17 7 6 19 19 C 1.38654 * 120.78759 * 269.72319 * 18 17 7 20 20 C 1.38207 * 119.15749 * 179.79963 * 19 18 17 21 21 N 1.31867 * 120.76643 * 0.48192 * 20 19 18 22 22 C 1.31872 * 121.72449 * 359.74582 * 21 20 19 23 23 C 1.38204 * 120.76345 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46934 * 300.00194 * 1 2 3 26 26 H 1.09007 * 109.46475 * 60.00087 * 1 2 3 27 27 H 1.08994 * 109.47233 * 240.00201 * 2 1 3 28 28 H 1.08997 * 109.47202 * 119.99809 * 2 1 3 29 29 H 1.08988 * 109.46935 * 60.00214 * 6 4 3 30 30 H 1.09000 * 109.47234 * 299.99879 * 6 4 3 31 31 H 1.09002 * 109.46457 * 313.95150 * 8 7 6 32 32 H 1.09000 * 109.46913 * 73.94848 * 8 7 6 33 33 H 0.96997 * 119.99906 * 179.97438 * 12 11 9 34 34 H 1.08992 * 109.47459 * 289.99741 * 17 7 6 35 35 H 1.09004 * 109.47040 * 49.99892 * 17 7 6 36 36 H 1.07998 * 120.42103 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.61549 * 180.20404 * 20 19 18 38 38 H 1.08001 * 119.61461 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.41730 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3877 2.8606 0.0010 8 6 5.8843 2.2776 -1.2525 9 6 7.3338 1.8982 -1.0907 10 1 7.8360 2.0731 -0.1506 11 6 8.0188 1.3278 -2.1425 12 7 7.4073 1.1153 -3.2874 13 14 9.8156 0.8583 -1.9420 14 1 9.9482 -0.1356 -0.8467 15 1 10.3176 0.2688 -3.2092 16 1 10.6096 2.0687 -1.6110 17 6 5.9841 4.1817 0.2398 18 6 7.4645 4.0291 0.4770 19 6 7.9625 3.8420 1.7574 20 6 9.3258 3.7017 1.9359 21 7 10.1496 3.7536 0.9075 22 6 9.7118 3.9347 -0.3232 23 6 8.3613 4.0782 -0.5792 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.5845 3.4693 0.8911 30 1 3.5851 3.4699 -0.8888 31 1 5.3013 1.3894 -1.4961 32 1 5.7873 3.0075 -2.0562 33 1 7.8893 0.7144 -4.0275 34 1 5.8193 4.8174 -0.6301 35 1 5.5208 4.6367 1.1153 36 1 7.2933 3.8035 2.6042 37 1 9.7214 3.5523 2.9297 38 1 10.4170 3.9721 -1.1404 39 1 8.0090 4.2267 -1.5893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204082285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:31 Heat of formation + Delta-G solvation = -27.306283 kcal Electronic energy + Delta-G solvation = -22159.478529 eV Core-core repulsion = 18875.250187 eV Total energy + Delta-G solvation = -3284.228342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11262 -39.49818 -37.04949 -35.75420 -32.74295 -32.20524 -31.59937 -30.37033 -28.21720 -27.35564 -24.41291 -23.04400 -22.57329 -22.12974 -20.76075 -19.94665 -17.34733 -16.77953 -16.26751 -16.13537 -15.59890 -15.51016 -14.90829 -14.65286 -14.32130 -14.15432 -13.43602 -13.41316 -12.92846 -12.89178 -12.78211 -12.26711 -12.08983 -12.05018 -11.60868 -11.51112 -11.47201 -11.06227 -10.82766 -10.66598 -10.44703 -10.27284 -10.09508 -9.70870 -9.45819 -8.69132 -8.57397 -8.33384 -7.89657 -7.54540 -6.10217 -3.99020 2.02986 2.12003 2.73876 2.92665 3.35362 3.38980 3.47671 4.37241 4.57057 4.94624 4.97075 4.98580 5.12666 5.26680 5.30048 5.33853 5.34770 5.48316 5.52760 5.66250 5.74279 5.78645 5.85522 5.86945 5.93662 6.09439 6.15612 6.48203 6.63440 6.76705 6.81587 7.05071 7.08496 7.25108 7.57970 7.70907 7.94865 8.00098 8.26606 8.42833 8.82291 8.97010 9.52672 10.99494 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.005854 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.016040 B = 4782.198296 C = 5747.262254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.453 3.547 5 O -0.466 6.466 6 C 0.067 3.933 7 N -0.522 5.522 8 C 0.183 3.817 9 C -0.486 4.486 10 H 0.077 0.923 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.876 3.124 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.252 1.252 17 C 0.109 3.891 18 C -0.028 4.028 19 C -0.158 4.158 20 C 0.058 3.942 21 N -0.488 5.488 22 C 0.056 3.944 23 C -0.070 4.070 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.048 0.952 32 H -0.009 1.009 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 5.327 6.353 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.293 3.707 5 O -0.349 6.349 6 C -0.062 4.062 7 N -0.248 5.248 8 C 0.058 3.942 9 C -0.523 4.523 10 H 0.095 0.905 11 C -0.143 4.143 12 N -0.529 5.529 13 Si 0.704 3.296 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.177 1.177 17 C -0.019 4.019 18 C -0.036 4.036 19 C -0.178 4.178 20 C -0.100 4.100 21 N -0.197 5.197 22 C -0.099 4.099 23 C -0.090 4.090 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.219 4.502 6.655 11.494 hybrid contribution -0.255 -0.324 -0.930 1.017 sum -8.474 4.177 5.726 11.047 Atomic orbital electron populations 1.21784 0.93073 1.02609 1.03217 1.22910 0.94828 0.80880 1.02584 1.86458 1.25418 1.31882 1.85150 1.23674 0.80020 0.93253 0.73728 1.90753 1.59608 1.42549 1.41958 1.21454 0.91513 0.90123 1.03138 1.61967 1.00805 1.20812 1.41238 1.20030 0.96850 0.94752 0.82542 1.21497 0.94556 1.37581 0.98674 0.90500 1.24919 0.98581 0.95539 0.95266 1.69958 1.36798 1.43257 1.02908 0.86922 0.85398 0.80196 0.77112 1.20421 1.21686 1.17676 1.20821 0.91253 0.90013 0.99779 1.19677 0.94775 0.96227 0.92957 1.21700 0.96452 1.02546 0.97151 1.22281 0.90120 1.00355 0.97293 1.67427 1.40325 1.12030 0.99944 1.22389 0.94145 0.99783 0.93623 1.21749 0.93481 0.94363 0.99422 0.90570 0.91708 0.91632 0.91353 0.91498 0.87897 0.91613 0.93436 0.99096 0.92807 0.94242 0.91169 0.86204 0.84362 0.84145 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.77 10.22 -39.26 -0.40 -6.17 16 4 C 0.45 8.37 7.54 36.01 0.27 8.64 16 5 O -0.47 -10.67 14.20 -18.75 -0.27 -10.94 16 6 C 0.07 1.10 5.56 -4.98 -0.03 1.07 16 7 N -0.52 -10.57 4.30 -238.96 -1.03 -11.59 16 8 C 0.18 4.55 4.25 -4.98 -0.02 4.53 16 9 C -0.49 -12.97 5.39 -34.44 -0.19 -13.16 16 10 H 0.08 2.09 4.70 -52.48 -0.25 1.84 16 11 C 0.06 1.64 5.44 -17.82 -0.10 1.55 16 12 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 13 Si 0.88 21.75 28.33 -169.99 -4.82 16.94 16 14 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.25 -5.84 4.90 56.52 0.28 -5.56 16 17 C 0.11 1.87 5.16 -4.97 -0.03 1.84 16 18 C -0.03 -0.53 3.48 -104.32 -0.36 -0.89 16 19 C -0.16 -2.81 9.62 -39.44 -0.38 -3.19 16 20 C 0.06 1.06 11.18 -17.55 -0.20 0.86 16 21 N -0.49 -9.99 10.36 -13.25 -0.14 -10.13 16 22 C 0.06 1.15 8.75 -17.55 -0.15 1.00 16 23 C -0.07 -1.41 6.01 -39.44 -0.24 -1.65 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.10 1.32 7.93 -51.94 -0.41 0.91 16 30 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.05 1.34 5.80 -51.93 -0.30 1.04 16 32 H -0.01 -0.22 7.99 -51.93 -0.41 -0.64 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 35 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.14 2.75 7.09 -52.49 -0.37 2.38 16 39 H 0.13 2.72 7.69 -52.48 -0.40 2.31 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -32.56 318.97 -7.52 -40.09 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.61 Total: 1.49 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.80 Total: 0.65 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.43 Total: -46.86 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.67 Total: -17.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.82 Total: 16.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.56 -7.52 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204082285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds