Wall clock time and date at job start Tue Mar 31 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.46895 * 2 1 4 4 C 1.34232 * 116.99630 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99636 * 180.02562 * 4 3 2 7 7 N 1.46898 * 109.46662 * 180.02562 * 6 4 3 8 8 C 1.46901 * 111.00524 * 66.04769 * 7 6 4 9 9 C 1.50698 * 109.47538 * 193.95392 * 8 7 6 10 10 H 1.08007 * 119.99682 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00475 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99704 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47159 * 60.00601 * 13 11 9 15 15 H 1.48505 * 109.47271 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47548 * 300.00357 * 13 11 9 17 17 C 1.46906 * 110.99746 * 189.99888 * 7 6 4 18 18 C 1.50703 * 109.47109 * 169.99823 * 17 7 6 19 19 C 1.38654 * 120.78759 * 269.72319 * 18 17 7 20 20 C 1.38207 * 119.15749 * 179.79963 * 19 18 17 21 21 N 1.31867 * 120.76643 * 0.48192 * 20 19 18 22 22 C 1.31872 * 121.72449 * 359.74582 * 21 20 19 23 23 C 1.38204 * 120.76345 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.46857 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46934 * 300.00194 * 1 2 3 26 26 H 1.09007 * 109.46475 * 60.00087 * 1 2 3 27 27 H 1.08994 * 109.47233 * 240.00201 * 2 1 3 28 28 H 1.08997 * 109.47202 * 119.99809 * 2 1 3 29 29 H 1.08988 * 109.46935 * 60.00214 * 6 4 3 30 30 H 1.09000 * 109.47234 * 299.99879 * 6 4 3 31 31 H 1.09002 * 109.46457 * 313.95150 * 8 7 6 32 32 H 1.09000 * 109.46913 * 73.94848 * 8 7 6 33 33 H 0.96997 * 119.99906 * 179.97438 * 12 11 9 34 34 H 1.08992 * 109.47459 * 289.99741 * 17 7 6 35 35 H 1.09004 * 109.47040 * 49.99892 * 17 7 6 36 36 H 1.07998 * 120.42103 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.61549 * 180.20404 * 20 19 18 38 38 H 1.08001 * 119.61461 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.41730 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 7 5.3877 2.8606 0.0010 8 6 5.8843 2.2776 -1.2525 9 6 7.3338 1.8982 -1.0907 10 1 7.8360 2.0731 -0.1506 11 6 8.0188 1.3278 -2.1425 12 7 7.4073 1.1153 -3.2874 13 14 9.8156 0.8583 -1.9420 14 1 9.9482 -0.1356 -0.8467 15 1 10.3176 0.2688 -3.2092 16 1 10.6096 2.0687 -1.6110 17 6 5.9841 4.1817 0.2398 18 6 7.4645 4.0291 0.4770 19 6 7.9625 3.8420 1.7574 20 6 9.3258 3.7017 1.9359 21 7 10.1496 3.7536 0.9075 22 6 9.7118 3.9347 -0.3232 23 6 8.3613 4.0782 -0.5792 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.5845 3.4693 0.8911 30 1 3.5851 3.4699 -0.8888 31 1 5.3013 1.3894 -1.4961 32 1 5.7873 3.0075 -2.0562 33 1 7.8893 0.7144 -4.0275 34 1 5.8193 4.8174 -0.6301 35 1 5.5208 4.6367 1.1153 36 1 7.2933 3.8035 2.6042 37 1 9.7214 3.5523 2.9297 38 1 10.4170 3.9721 -1.1404 39 1 8.0090 4.2267 -1.5893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204082285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:30 Heat of formation + Delta-G solvation = -49.559389 kcal Electronic energy + Delta-G solvation = -22160.443496 eV Core-core repulsion = 18875.250187 eV Total energy + Delta-G solvation = -3285.193309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53546 -40.98212 -38.50535 -37.23438 -34.74613 -33.67356 -32.61744 -31.88968 -29.90328 -28.91174 -26.02371 -24.43217 -24.07212 -23.56654 -22.16734 -21.44346 -18.80984 -18.62648 -17.67751 -17.57884 -17.09636 -16.91070 -16.60416 -16.21027 -15.89263 -15.56119 -14.91031 -14.87550 -14.43916 -14.38202 -14.01345 -13.77074 -13.55810 -13.27961 -13.12447 -13.00573 -12.78195 -12.52346 -12.47048 -12.45052 -12.17705 -11.84465 -11.49464 -11.41235 -11.22703 -10.60893 -10.18512 -9.90920 -9.54915 -9.13270 -8.20345 -6.13069 0.53850 0.62820 1.32336 1.35296 1.37518 1.44881 1.68957 2.37409 3.02017 3.20914 3.45914 3.82389 3.85737 3.97502 4.00775 4.09812 4.13379 4.33477 4.36243 4.38630 4.48995 4.53497 4.67114 4.72790 4.86992 4.94264 5.01791 5.09163 5.15806 5.19513 5.22126 5.39854 5.50931 5.65174 5.76744 6.05856 6.11322 6.26763 6.46965 6.88761 6.94775 7.31294 7.43239 8.90579 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.005854 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.016040 B = 4782.198296 C = 5747.262254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.454 3.546 5 O -0.521 6.521 6 C 0.066 3.934 7 N -0.535 5.535 8 C 0.202 3.798 9 C -0.479 4.479 10 H 0.074 0.926 11 C 0.016 3.984 12 N -0.930 5.930 13 Si 0.918 3.082 14 H -0.295 1.295 15 H -0.292 1.292 16 H -0.230 1.230 17 C 0.107 3.893 18 C -0.036 4.036 19 C -0.155 4.155 20 C 0.059 3.941 21 N -0.510 5.510 22 C 0.047 3.953 23 C -0.085 4.085 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.010 0.990 32 H -0.028 1.028 33 H 0.259 0.741 34 H 0.044 0.956 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.140 0.860 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 6.714 8.807 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.296 3.704 5 O -0.408 6.408 6 C -0.063 4.063 7 N -0.261 5.261 8 C 0.076 3.924 9 C -0.517 4.517 10 H 0.092 0.908 11 C -0.182 4.182 12 N -0.571 5.571 13 Si 0.745 3.255 14 H -0.222 1.222 15 H -0.219 1.219 16 H -0.153 1.153 17 C -0.019 4.019 18 C -0.045 4.045 19 C -0.175 4.175 20 C -0.099 4.099 21 N -0.220 5.220 22 C -0.108 4.108 23 C -0.106 4.106 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.170 0.830 30 H 0.100 0.900 31 H 0.028 0.972 32 H -0.010 1.010 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.172 0.828 37 H 0.190 0.810 38 H 0.158 0.842 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.405 5.936 9.126 14.386 hybrid contribution 0.041 -0.695 -1.533 1.684 sum -9.364 5.240 7.593 13.145 Atomic orbital electron populations 1.21794 0.89599 1.04334 1.03944 1.23218 0.97477 0.79658 1.01780 1.86463 1.23850 1.33264 1.84358 1.24190 0.80503 0.93571 0.72090 1.90738 1.60960 1.44330 1.44747 1.21680 0.89050 0.89404 1.06130 1.61761 1.03369 1.22712 1.38267 1.19572 0.95499 0.93060 0.84306 1.21659 0.95492 1.36545 0.98015 0.90796 1.25468 1.01283 0.96164 0.95283 1.70054 1.37895 1.45507 1.03670 0.86279 0.82925 0.80162 0.76157 1.22205 1.21859 1.15316 1.20991 0.90242 0.88665 1.02007 1.20028 0.95771 0.95466 0.93186 1.22086 0.96841 1.00947 0.97592 1.22946 0.90504 0.98290 0.98134 1.67476 1.41224 1.13078 1.00264 1.22456 0.94319 0.99975 0.94051 1.21713 0.93933 0.95618 0.99319 0.88363 0.90521 0.91287 0.92988 0.91680 0.83041 0.89951 0.97208 1.01018 0.93176 0.93749 0.86563 0.82844 0.81019 0.84220 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.36 -10.79 10.22 -51.43 -0.53 -11.32 16 4 C 0.45 16.40 7.54 71.24 0.54 16.94 16 5 O -0.52 -24.32 14.20 21.98 0.31 -24.01 16 6 C 0.07 1.99 5.56 85.56 0.48 2.46 16 7 N -0.54 -20.73 4.30 -909.94 -3.91 -24.64 16 8 C 0.20 10.19 4.25 85.56 0.36 10.55 16 9 C -0.48 -25.95 5.39 25.60 0.14 -25.81 16 10 H 0.07 3.99 4.70 -2.91 -0.01 3.98 16 11 C 0.02 0.92 5.44 84.65 0.46 1.38 16 12 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 13 Si 0.92 45.54 28.33 68.60 1.94 47.49 16 14 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 15 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 16 H -0.23 -10.41 4.90 99.48 0.49 -9.92 16 17 C 0.11 3.36 5.16 85.56 0.44 3.80 16 18 C -0.04 -1.28 3.48 -19.67 -0.07 -1.35 16 19 C -0.15 -4.93 9.62 22.36 0.22 -4.71 16 20 C 0.06 1.98 11.18 84.68 0.95 2.93 16 21 N -0.51 -19.96 10.36 -195.84 -2.03 -21.99 16 22 C 0.05 1.87 8.75 84.68 0.74 2.61 16 23 C -0.09 -3.41 6.01 22.36 0.13 -3.28 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.15 3.12 7.93 -2.39 -0.02 3.10 16 30 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 31 H 0.01 0.58 5.80 -2.39 -0.01 0.56 16 32 H -0.03 -1.48 7.99 -2.39 -0.02 -1.50 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.04 1.36 7.97 -2.39 -0.02 1.35 16 35 H 0.12 2.60 7.89 -2.38 -0.02 2.58 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.17 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.14 5.45 7.09 -2.91 -0.02 5.43 16 39 H 0.11 4.86 7.69 -2.91 -0.02 4.84 16 Total: -1.00 -73.62 318.97 2.47 -71.16 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.82 Total: 13.31 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.57 Total: 5.78 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.66 Total: -102.41 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.21 Total: -35.33 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.94 Total: 47.49 kcal Total: -73.62 2.47 -71.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204082285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.597 kcal (2) G-P(sol) polarization free energy of solvation -73.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds