Wall clock time and date at job start Tue Mar 31 2020 00:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46622 * 2 1 4 4 C 1.46501 * 120.00001 * 269.99992 * 3 2 1 5 5 C 1.53002 * 109.46890 * 270.00372 * 4 3 2 6 6 O 1.42897 * 109.47486 * 64.99892 * 5 4 3 7 7 C 1.34777 * 119.99941 * 90.00232 * 3 2 1 8 8 O 1.21590 * 119.99814 * 179.97438 * 7 3 2 9 9 N 1.34776 * 120.00168 * 359.97438 * 7 3 2 10 10 C 1.39954 * 120.00052 * 174.30441 * 9 7 3 11 11 C 1.39293 * 119.94434 * 145.34534 * 10 9 7 12 12 C 1.38486 * 120.42568 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32216 * 0.29095 * 12 11 10 14 14 C 1.40731 * 119.88076 * 359.43799 * 13 12 11 15 15 C 1.41418 * 120.21106 * 180.31381 * 14 13 12 16 16 H 1.08000 * 120.00242 * 214.56954 * 15 14 13 17 17 C 1.39935 * 119.99481 * 34.56664 * 15 14 13 18 18 N 1.30826 * 120.00262 * 5.44895 * 17 15 14 19 19 Si 1.86800 * 119.99657 * 185.44192 * 17 15 14 20 20 H 1.48500 * 109.47252 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46966 * 120.00251 * 19 17 15 22 22 H 1.48495 * 109.47285 * 240.00446 * 19 17 15 23 23 C 1.38231 * 119.95047 * 325.31983 * 10 9 7 24 24 H 1.08998 * 109.46975 * 60.00103 * 1 2 3 25 25 H 1.08999 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47172 * 299.99613 * 1 2 3 27 27 H 1.09000 * 109.47172 * 240.00386 * 2 1 3 28 28 H 1.08996 * 109.47259 * 119.99435 * 2 1 3 29 29 H 1.08997 * 109.47006 * 30.00116 * 4 3 2 30 30 H 1.09000 * 109.47055 * 150.00368 * 4 3 2 31 31 H 1.09000 * 109.46952 * 185.00338 * 5 4 3 32 32 H 1.09000 * 109.47430 * 304.99752 * 5 4 3 33 33 H 0.96703 * 114.00336 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99969 * 354.30260 * 9 7 3 35 35 H 1.07995 * 119.78737 * 359.97438 * 11 10 9 36 36 H 1.08007 * 119.84063 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.05632 * 179.70842 * 13 12 11 38 38 H 0.97001 * 120.00197 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.15537 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.7074 1.8315 -1.7104 6 8 3.8944 0.4434 -1.9935 7 6 2.2429 2.0167 1.1672 8 8 2.6485 3.1629 1.1672 9 7 2.0179 1.3815 2.3344 10 6 2.3628 1.9962 3.5435 11 6 1.5773 1.7930 4.6757 12 6 1.9097 2.3959 5.8773 13 6 3.0179 3.2084 5.9642 14 6 3.8241 3.4183 4.8300 15 6 4.9676 4.2461 4.9131 16 1 5.2571 4.8536 4.0683 17 6 5.7240 4.2781 6.0899 18 7 5.4375 3.4652 7.0741 19 14 7.1431 5.4816 6.2555 20 1 7.2589 6.2846 5.0118 21 1 6.8933 6.3860 7.4067 22 1 8.4048 4.7314 6.4801 23 6 3.4826 2.8037 3.6123 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.5816 1.6878 -2.0283 30 1 2.0954 3.1412 -1.1384 31 1 3.9155 2.4164 -2.6064 32 1 4.3862 2.1344 -0.9132 33 1 4.7898 0.2176 -2.2804 34 1 1.6168 0.4982 2.3365 35 1 0.7035 1.1611 4.6161 36 1 1.2942 2.2315 6.7495 37 1 3.2705 3.6802 6.9023 38 1 5.9616 3.4877 7.8900 39 1 4.0927 2.9612 2.7351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205388376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:14 Heat of formation + Delta-G solvation = -53.733724 kcal Electronic energy + Delta-G solvation = -21689.511619 eV Core-core repulsion = 18404.137297 eV Total energy + Delta-G solvation = -3285.374322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19675 -37.73307 -36.79050 -35.43781 -34.39962 -32.92627 -31.18139 -29.73181 -29.08903 -27.43102 -25.20356 -23.38341 -23.17611 -21.08502 -20.70196 -19.08006 -18.18193 -17.53364 -17.13455 -16.23378 -15.39386 -15.31231 -14.70314 -14.46870 -14.29142 -13.94479 -13.84605 -13.52781 -13.11204 -12.89502 -12.61886 -12.15347 -12.10253 -11.90562 -11.59461 -11.47857 -11.15747 -11.10241 -11.05750 -10.87842 -10.38907 -10.18213 -10.05043 -9.58843 -9.36262 -9.16494 -8.91494 -8.51249 -7.30471 -6.81355 -6.54990 -4.29193 2.75909 2.88532 3.03706 3.15271 3.21512 3.24443 3.73768 4.05301 4.19922 4.28813 4.78184 4.90933 5.05257 5.12487 5.22995 5.27941 5.36944 5.66282 5.70512 5.73262 5.77138 5.85389 6.10814 6.27703 6.42422 6.57804 6.86071 6.91715 7.09346 7.15894 7.31145 7.38537 7.50792 7.74982 7.84844 8.02876 8.19528 8.31619 8.45846 8.74588 8.97590 9.05416 9.10582 10.38718 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.004685 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.643595 B = 5974.890245 C = 7010.767143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.626 5.626 4 C 0.138 3.862 5 C 0.057 3.943 6 O -0.573 6.573 7 C 0.700 3.300 8 O -0.569 6.569 9 N -0.681 5.681 10 C 0.163 3.837 11 C -0.252 4.252 12 C -0.097 4.097 13 C -0.159 4.159 14 C 0.120 3.880 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.813 5.813 19 Si 0.910 3.090 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.198 4.198 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.276 0.724 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -7.050 -13.348 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.015 4.015 3 N -0.364 5.364 4 C 0.014 3.986 5 C -0.022 4.022 6 O -0.378 6.378 7 C 0.403 3.597 8 O -0.445 6.445 9 N -0.328 5.328 10 C 0.070 3.930 11 C -0.273 4.273 12 C -0.116 4.116 13 C -0.179 4.179 14 C 0.118 3.882 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.440 5.440 19 Si 0.736 3.264 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.220 4.220 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.223 0.777 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.339 -6.288 -12.982 15.381 hybrid contribution 1.051 -0.070 -0.011 1.053 sum -4.289 -6.358 -12.993 15.087 Atomic orbital electron populations 1.22269 0.96370 1.02051 1.02580 1.21479 0.93687 0.82864 1.03493 1.47089 1.70688 1.14153 1.04515 1.21301 0.94408 0.98698 0.84192 1.22721 0.98381 0.82086 0.99031 1.86431 1.35600 1.25524 1.90286 1.15948 0.78963 0.84524 0.80313 1.90957 1.51609 1.16194 1.85753 1.42738 1.65485 1.20445 1.04128 1.17279 0.94817 0.97969 0.82889 1.20074 1.02086 1.11508 0.93668 1.20479 0.97603 0.98241 0.95263 1.21348 0.94405 1.02088 1.00042 1.17511 0.91220 0.89446 0.90071 1.19548 1.08489 1.22544 0.98948 0.90556 1.25827 0.98565 0.94913 0.94881 1.69789 1.37316 1.31892 1.04985 0.86227 0.80464 0.80593 0.79162 1.18587 1.19944 1.20138 1.21100 0.97889 1.03802 0.99216 0.92369 0.91603 0.92378 0.89265 0.91160 0.90303 0.88409 0.93009 0.92742 0.77733 0.77078 0.89306 0.88969 0.86462 0.91297 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.21 5.66 -4.04 -0.02 1.19 16 3 N -0.63 -9.02 2.44 -179.42 -0.44 -9.45 16 4 C 0.14 1.70 5.81 -4.04 -0.02 1.68 16 5 C 0.06 0.65 7.39 37.16 0.27 0.92 16 6 O -0.57 -6.05 12.48 -35.23 -0.44 -6.49 16 7 C 0.70 13.48 8.00 -86.92 -0.70 12.78 16 8 O -0.57 -13.33 13.71 5.29 0.07 -13.26 16 9 N -0.68 -13.01 5.16 -14.27 -0.07 -13.08 16 10 C 0.16 3.82 6.25 -83.76 -0.52 3.30 16 11 C -0.25 -5.68 9.97 -39.10 -0.39 -6.07 16 12 C -0.10 -2.30 10.02 -39.69 -0.40 -2.70 16 13 C -0.16 -4.26 8.62 -38.84 -0.33 -4.59 16 14 C 0.12 3.39 5.50 -106.85 -0.59 2.80 16 15 C -0.46 -13.08 9.04 -37.74 -0.34 -13.42 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.92 5.31 -17.34 -0.09 1.83 16 18 N -0.81 -21.82 10.98 55.55 0.61 -21.21 16 19 Si 0.91 19.72 29.56 -169.99 -5.03 14.70 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.20 -5.30 8.39 -38.69 -0.32 -5.62 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.93 7.11 -51.93 -0.37 0.56 16 28 H 0.07 0.78 6.45 -51.93 -0.34 0.44 16 29 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.10 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.38 2.50 9.12 45.56 0.42 2.91 16 34 H 0.39 6.13 6.64 -40.82 -0.27 5.86 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.12 3.23 6.49 -52.49 -0.34 2.89 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.11 2.94 6.52 -52.48 -0.34 2.60 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -32.87 326.64 -8.00 -40.87 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.55 Total: 12.19 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.08 Total: -9.19 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.10 Total: -43.75 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.37 Total: -19.75 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.87 -8.00 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205388376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.863 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds